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SSS: Semi-Supervised SAM-2 with Efficient Prompting for Medical Imaging Segmentation

Hongjie Zhu, Xiwei Liu, Rundong Xue, Zeyu Zhang, Yong Xu, Daji Ergu, Ying Cai, Yang Zhao

arxiv logopreprintJun 10 2025
In the era of information explosion, efficiently leveraging large-scale unlabeled data while minimizing the reliance on high-quality pixel-level annotations remains a critical challenge in the field of medical imaging. Semi-supervised learning (SSL) enhances the utilization of unlabeled data by facilitating knowledge transfer, significantly improving the performance of fully supervised models and emerging as a highly promising research direction in medical image analysis. Inspired by the ability of Vision Foundation Models (e.g., SAM-2) to provide rich prior knowledge, we propose SSS (Semi-Supervised SAM-2), a novel approach that leverages SAM-2's robust feature extraction capabilities to uncover latent knowledge in unlabeled medical images, thus effectively enhancing feature support for fully supervised medical image segmentation. Specifically, building upon the single-stream "weak-to-strong" consistency regularization framework, this paper introduces a Discriminative Feature Enhancement (DFE) mechanism to further explore the feature discrepancies introduced by various data augmentation strategies across multiple views. By leveraging feature similarity and dissimilarity across multi-scale augmentation techniques, the method reconstructs and models the features, thereby effectively optimizing the salient regions. Furthermore, a prompt generator is developed that integrates Physical Constraints with a Sliding Window (PCSW) mechanism to generate input prompts for unlabeled data, fulfilling SAM-2's requirement for additional prompts. Extensive experiments demonstrate the superiority of the proposed method for semi-supervised medical image segmentation on two multi-label datasets, i.e., ACDC and BHSD. Notably, SSS achieves an average Dice score of 53.15 on BHSD, surpassing the previous state-of-the-art method by +3.65 Dice. Code will be available at https://github.com/AIGeeksGroup/SSS.

HiSin: Efficient High-Resolution Sinogram Inpainting via Resolution-Guided Progressive Inference

Jiaze E, Srutarshi Banerjee, Tekin Bicer, Guannan Wang, Yanfu Zhang, Bin Ren

arxiv logopreprintJun 10 2025
High-resolution sinogram inpainting is essential for computed tomography reconstruction, as missing high-frequency projections can lead to visible artifacts and diagnostic errors. Diffusion models are well-suited for this task due to their robustness and detail-preserving capabilities, but their application to high-resolution inputs is limited by excessive memory and computational demands. To address this limitation, we propose HiSin, a novel diffusion based framework for efficient sinogram inpainting via resolution-guided progressive inference. It progressively extracts global structure at low resolution and defers high-resolution inference to small patches, enabling memory-efficient inpainting. It further incorporates frequency-aware patch skipping and structure-adaptive step allocation to reduce redundant computation. Experimental results show that HiSin reduces peak memory usage by up to 31.25% and inference time by up to 18.15%, and maintains inpainting accuracy across datasets, resolutions, and mask conditions.

DIsoN: Decentralized Isolation Networks for Out-of-Distribution Detection in Medical Imaging

Felix Wagner, Pramit Saha, Harry Anthony, J. Alison Noble, Konstantinos Kamnitsas

arxiv logopreprintJun 10 2025
Safe deployment of machine learning (ML) models in safety-critical domains such as medical imaging requires detecting inputs with characteristics not seen during training, known as out-of-distribution (OOD) detection, to prevent unreliable predictions. Effective OOD detection after deployment could benefit from access to the training data, enabling direct comparison between test samples and the training data distribution to identify differences. State-of-the-art OOD detection methods, however, either discard training data after deployment or assume that test samples and training data are centrally stored together, an assumption that rarely holds in real-world settings. This is because shipping training data with the deployed model is usually impossible due to the size of training databases, as well as proprietary or privacy constraints. We introduce the Isolation Network, an OOD detection framework that quantifies the difficulty of separating a target test sample from the training data by solving a binary classification task. We then propose Decentralized Isolation Networks (DIsoN), which enables the comparison of training and test data when data-sharing is impossible, by exchanging only model parameters between the remote computational nodes of training and deployment. We further extend DIsoN with class-conditioning, comparing a target sample solely with training data of its predicted class. We evaluate DIsoN on four medical imaging datasets (dermatology, chest X-ray, breast ultrasound, histopathology) across 12 OOD detection tasks. DIsoN performs favorably against existing methods while respecting data-privacy. This decentralized OOD detection framework opens the way for a new type of service that ML developers could provide along with their models: providing remote, secure utilization of their training data for OOD detection services. Code will be available upon acceptance at: *****

Adapting Vision-Language Foundation Model for Next Generation Medical Ultrasound Image Analysis

Jingguo Qu, Xinyang Han, Tonghuan Xiao, Jia Ai, Juan Wu, Tong Zhao, Jing Qin, Ann Dorothy King, Winnie Chiu-Wing Chu, Jing Cai, Michael Tin-Cheung Yingınst

arxiv logopreprintJun 10 2025
Medical ultrasonography is an essential imaging technique for examining superficial organs and tissues, including lymph nodes, breast, and thyroid. It employs high-frequency ultrasound waves to generate detailed images of the internal structures of the human body. However, manually contouring regions of interest in these images is a labor-intensive task that demands expertise and often results in inconsistent interpretations among individuals. Vision-language foundation models, which have excelled in various computer vision applications, present new opportunities for enhancing ultrasound image analysis. Yet, their performance is hindered by the significant differences between natural and medical imaging domains. This research seeks to overcome these challenges by developing domain adaptation methods for vision-language foundation models. In this study, we explore the fine-tuning pipeline for vision-language foundation models by utilizing large language model as text refiner with special-designed adaptation strategies and task-driven heads. Our approach has been extensively evaluated on six ultrasound datasets and two tasks: segmentation and classification. The experimental results show that our method can effectively improve the performance of vision-language foundation models for ultrasound image analysis, and outperform the existing state-of-the-art vision-language and pure foundation models. The source code of this study is available at \href{https://github.com/jinggqu/NextGen-UIA}{GitHub}.

Geometric deep learning for local growth prediction on abdominal aortic aneurysm surfaces

Dieuwertje Alblas, Patryk Rygiel, Julian Suk, Kaj O. Kappe, Marieke Hofman, Christoph Brune, Kak Khee Yeung, Jelmer M. Wolterink

arxiv logopreprintJun 10 2025
Abdominal aortic aneurysms (AAAs) are progressive focal dilatations of the abdominal aorta. AAAs may rupture, with a survival rate of only 20\%. Current clinical guidelines recommend elective surgical repair when the maximum AAA diameter exceeds 55 mm in men or 50 mm in women. Patients that do not meet these criteria are periodically monitored, with surveillance intervals based on the maximum AAA diameter. However, this diameter does not take into account the complex relation between the 3D AAA shape and its growth, making standardized intervals potentially unfit. Personalized AAA growth predictions could improve monitoring strategies. We propose to use an SE(3)-symmetric transformer model to predict AAA growth directly on the vascular model surface enriched with local, multi-physical features. In contrast to other works which have parameterized the AAA shape, this representation preserves the vascular surface's anatomical structure and geometric fidelity. We train our model using a longitudinal dataset of 113 computed tomography angiography (CTA) scans of 24 AAA patients at irregularly sampled intervals. After training, our model predicts AAA growth to the next scan moment with a median diameter error of 1.18 mm. We further demonstrate our model's utility to identify whether a patient will become eligible for elective repair within two years (acc = 0.93). Finally, we evaluate our model's generalization on an external validation set consisting of 25 CTAs from 7 AAA patients from a different hospital. Our results show that local directional AAA growth prediction from the vascular surface is feasible and may contribute to personalized surveillance strategies.

A Privacy-Preserving Federated Learning Framework for Generalizable CBCT to Synthetic CT Translation in Head and Neck

Ciro Benito Raggio, Paolo Zaffino, Maria Francesca Spadea

arxiv logopreprintJun 10 2025
Shortened Abstract Cone-beam computed tomography (CBCT) has become a widely adopted modality for image-guided radiotherapy (IGRT). However, CBCT suffers from increased noise, limited soft-tissue contrast, and artifacts, resulting in unreliable Hounsfield unit values and hindering direct dose calculation. Synthetic CT (sCT) generation from CBCT addresses these issues, especially using deep learning (DL) methods. Existing approaches are limited by institutional heterogeneity, scanner-dependent variations, and data privacy regulations that prevent multi-center data sharing. To overcome these challenges, we propose a cross-silo horizontal federated learning (FL) approach for CBCT-to-sCT synthesis in the head and neck region, extending our FedSynthCT framework. A conditional generative adversarial network was collaboratively trained on data from three European medical centers in the public SynthRAD2025 challenge dataset. The federated model demonstrated effective generalization across centers, with mean absolute error (MAE) ranging from $64.38\pm13.63$ to $85.90\pm7.10$ HU, structural similarity index (SSIM) from $0.882\pm0.022$ to $0.922\pm0.039$, and peak signal-to-noise ratio (PSNR) from $32.86\pm0.94$ to $34.91\pm1.04$ dB. Notably, on an external validation dataset of 60 patients, comparable performance was achieved (MAE: $75.22\pm11.81$ HU, SSIM: $0.904\pm0.034$, PSNR: $33.52\pm2.06$ dB) without additional training, confirming robust generalization despite protocol, scanner differences and registration errors. These findings demonstrate the technical feasibility of FL for CBCT-to-sCT synthesis while preserving data privacy and offer a collaborative solution for developing generalizable models across institutions without centralized data sharing or site-specific fine-tuning.

DCD: A Semantic Segmentation Model for Fetal Ultrasound Four-Chamber View

Donglian Li, Hui Guo, Minglang Chen, Huizhen Chen, Jialing Chen, Bocheng Liang, Pengchen Liang, Ying Tan

arxiv logopreprintJun 10 2025
Accurate segmentation of anatomical structures in the apical four-chamber (A4C) view of fetal echocardiography is essential for early diagnosis and prenatal evaluation of congenital heart disease (CHD). However, precise segmentation remains challenging due to ultrasound artifacts, speckle noise, anatomical variability, and boundary ambiguity across different gestational stages. To reduce the workload of sonographers and enhance segmentation accuracy, we propose DCD, an advanced deep learning-based model for automatic segmentation of key anatomical structures in the fetal A4C view. Our model incorporates a Dense Atrous Spatial Pyramid Pooling (Dense ASPP) module, enabling superior multi-scale feature extraction, and a Convolutional Block Attention Module (CBAM) to enhance adaptive feature representation. By effectively capturing both local and global contextual information, DCD achieves precise and robust segmentation, contributing to improved prenatal cardiac assessment.

MedMoE: Modality-Specialized Mixture of Experts for Medical Vision-Language Understanding

Shivang Chopra, Lingchao Mao, Gabriela Sanchez-Rodriguez, Andrew J Feola, Jing Li, Zsolt Kira

arxiv logopreprintJun 10 2025
Different medical imaging modalities capture diagnostic information at varying spatial resolutions, from coarse global patterns to fine-grained localized structures. However, most existing vision-language frameworks in the medical domain apply a uniform strategy for local feature extraction, overlooking the modality-specific demands. In this work, we present MedMoE, a modular and extensible vision-language processing framework that dynamically adapts visual representation based on the diagnostic context. MedMoE incorporates a Mixture-of-Experts (MoE) module conditioned on the report type, which routes multi-scale image features through specialized expert branches trained to capture modality-specific visual semantics. These experts operate over feature pyramids derived from a Swin Transformer backbone, enabling spatially adaptive attention to clinically relevant regions. This framework produces localized visual representations aligned with textual descriptions, without requiring modality-specific supervision at inference. Empirical results on diverse medical benchmarks demonstrate that MedMoE improves alignment and retrieval performance across imaging modalities, underscoring the value of modality-specialized visual representations in clinical vision-language systems.

MAMBO: High-Resolution Generative Approach for Mammography Images

Milica Škipina, Nikola Jovišić, Nicola Dall'Asen, Vanja Švenda, Anil Osman Tur, Slobodan Ilić, Elisa Ricci, Dubravko Ćulibrk

arxiv logopreprintJun 10 2025
Mammography is the gold standard for the detection and diagnosis of breast cancer. This procedure can be significantly enhanced with Artificial Intelligence (AI)-based software, which assists radiologists in identifying abnormalities. However, training AI systems requires large and diverse datasets, which are often difficult to obtain due to privacy and ethical constraints. To address this issue, the paper introduces MAMmography ensemBle mOdel (MAMBO), a novel patch-based diffusion approach designed to generate full-resolution mammograms. Diffusion models have shown breakthrough results in realistic image generation, yet few studies have focused on mammograms, and none have successfully generated high-resolution outputs required to capture fine-grained features of small lesions. To achieve this, MAMBO integrates separate diffusion models to capture both local and global (image-level) contexts. The contextual information is then fed into the final patch-based model, significantly aiding the noise removal process. This thoughtful design enables MAMBO to generate highly realistic mammograms of up to 3840x3840 pixels. Importantly, this approach can be used to enhance the training of classification models and extended to anomaly detection. Experiments, both numerical and radiologist validation, assess MAMBO's capabilities in image generation, super-resolution, and anomaly detection, highlighting its potential to enhance mammography analysis for more accurate diagnoses and earlier lesion detection.

Biologically Inspired Deep Learning Approaches for Fetal Ultrasound Image Classification

Rinat Prochii, Elizaveta Dakhova, Pavel Birulin, Maxim Sharaev

arxiv logopreprintJun 10 2025
Accurate classification of second-trimester fetal ultrasound images remains challenging due to low image quality, high intra-class variability, and significant class imbalance. In this work, we introduce a simple yet powerful, biologically inspired deep learning ensemble framework that-unlike prior studies focused on only a handful of anatomical targets-simultaneously distinguishes 16 fetal structures. Drawing on the hierarchical, modular organization of biological vision systems, our model stacks two complementary branches (a "shallow" path for coarse, low-resolution cues and a "detailed" path for fine, high-resolution features), concatenating their outputs for final prediction. To our knowledge, no existing method has addressed such a large number of classes with a comparably lightweight architecture. We trained and evaluated on 5,298 routinely acquired clinical images (annotated by three experts and reconciled via Dawid-Skene), reflecting real-world noise and variability rather than a "cleaned" dataset. Despite this complexity, our ensemble (EfficientNet-B0 + EfficientNet-B6 with LDAM-Focal loss) identifies 90% of organs with accuracy > 0.75 and 75% of organs with accuracy > 0.85-performance competitive with more elaborate models applied to far fewer categories. These results demonstrate that biologically inspired modular stacking can yield robust, scalable fetal anatomy recognition in challenging clinical settings.
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