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Whole-body CT-to-PET synthesis using a customized transformer-enhanced GAN.

Xu B, Nie Z, He J, Li A, Wu T

pubmed logopapersMay 14 2025
Positron emission tomography with 2-deoxy-2-[fluorine-18]fluoro-D-glucose integrated with computed tomography (18F-FDG PET-CT) is a multi-modality medical imaging technique widely used for screening and diagnosis of lesions and tumors, in which, CT can provide detailed anatomical structures, while PET can show metabolic activities. Nevertheless, it has disadvantages such as long scanning time, high cost, and relatively high radiation doses.

Purpose: We propose a deep learning model for the whole-body CT-to-PET synthesis task, generating high-quality synthetic PET images that are comparable to real ones in both clinical relevance and diagnostic value.

Material: We collect 102 pairs of 3D CT and PET scans, which are sliced into 27,240 pairs of 2D CT and PET images ( training: 21,855 pairs, validation: 2,810, testing: 2,575 pairs).

Methods: We propose a Transformer-enhanced Generative Adversarial Network (GAN) for whole-body CT-to-PET synthesis task. The CPGAN model uses residual blocks and Fully Connected Transformer Residual (FCTR) blocks to capture both local features and global contextual information. A customized loss function incorporating structural consistency is designed to improve the quality of synthesized PET images.

Results: Both quantitative and qualitative evaluation results demonstrate effectiveness of the CPGAN model. The mean and standard variance of NRMSE,PSNR and SSIM values on test set are (16.90 ± 12.27) × 10-4, 28.71 ± 2.67 and 0.926 ± 0.033, respectively, outperforming other seven state-of-the-art models. Three radiologists independently and blindly evaluated and gave subjective scores to 100 randomly chosen PET images (50 real and 50 synthetic). By Wilcoxon signed rank test, there are no statistical differences between the synthetic PET images and the real ones.

Conclusions: Despite the inherent limitations of CT images to directly reflect biological information of metabolic tissues, CPGAN model effectively synthesizes satisfying PET images from CT scans, which has potential in reducing the reliance on actual PET-CT scans.

ABS-Mamba: SAM2-Driven Bidirectional Spiral Mamba Network for Medical Image Translation

Feng Yuan, Yifan Gao, Wenbin Wu, Keqing Wu, Xiaotong Guo, Jie Jiang, Xin Gao

arxiv logopreprintMay 12 2025
Accurate multi-modal medical image translation requires ha-rmonizing global anatomical semantics and local structural fidelity, a challenge complicated by intermodality information loss and structural distortion. We propose ABS-Mamba, a novel architecture integrating the Segment Anything Model 2 (SAM2) for organ-aware semantic representation, specialized convolutional neural networks (CNNs) for preserving modality-specific edge and texture details, and Mamba's selective state-space modeling for efficient long- and short-range feature dependencies. Structurally, our dual-resolution framework leverages SAM2's image encoder to capture organ-scale semantics from high-resolution inputs, while a parallel CNNs branch extracts fine-grained local features. The Robust Feature Fusion Network (RFFN) integrates these epresentations, and the Bidirectional Mamba Residual Network (BMRN) models spatial dependencies using spiral scanning and bidirectional state-space dynamics. A three-stage skip fusion decoder enhances edge and texture fidelity. We employ Efficient Low-Rank Adaptation (LoRA+) fine-tuning to enable precise domain specialization while maintaining the foundational capabilities of the pre-trained components. Extensive experimental validation on the SynthRAD2023 and BraTS2019 datasets demonstrates that ABS-Mamba outperforms state-of-the-art methods, delivering high-fidelity cross-modal synthesis that preserves anatomical semantics and structural details to enhance diagnostic accuracy in clinical applications. The code is available at https://github.com/gatina-yone/ABS-Mamba

Generation of synthetic CT from MRI for MRI-based attenuation correction of brain PET images using radiomics and machine learning.

Hoseinipourasl A, Hossein-Zadeh GA, Sheikhzadeh P, Arabalibeik H, Alavijeh SK, Zaidi H, Ay MR

pubmed logopapersMay 12 2025
Accurate quantitative PET imaging in neurological studies requires proper attenuation correction. MRI-guided attenuation correction in PET/MRI remains challenging owing to the lack of direct relationship between MRI intensities and linear attenuation coefficients. This study aims at generating accurate patient-specific synthetic CT volumes, attenuation maps, and attenuation correction factor (ACF) sinograms with continuous values utilizing a combination of machine learning algorithms, image processing techniques, and voxel-based radiomics feature extraction approaches. Brain MR images of ten healthy volunteers were acquired using IR-pointwise encoding time reduction with radial acquisition (IR-PETRA) and VIBE-Dixon techniques. synthetic CT (SCT) images, attenuation maps, and attenuation correction factors (ACFs) were generated using the LightGBM, a fast and accurate machine learning algorithm, from the radiomics-based and image processing-based feature maps of MR images. Additionally, ultra-low-dose CT images of the same volunteers were acquired and served as the standard of reference for evaluation. The SCT images, attenuation maps, and ACF sinograms were assessed using qualitative and quantitative evaluation metrics and compared against their corresponding reference images, attenuation maps, and ACF sinograms. The voxel-wise and volume-wise comparison between synthetic and reference CT images yielded an average mean absolute error of 60.75 ± 8.8 HUs, an average structural similarity index of 0.88 ± 0.02, and an average peak signal-to-noise ratio of 32.83 ± 2.74 dB. Additionally, we compared MRI-based attenuation maps and ACF sinograms with their CT-based counterparts, revealing average normalized mean absolute errors of 1.48% and 1.33%, respectively. Quantitative assessments indicated higher correlations and similarities between LightGBM-synthesized CT and Reference CT images. Moreover, the cross-validation results showed the possibility of producing accurate SCT images, MRI-based attenuation maps, and ACF sinograms. This might spur the implementation of MRI-based attenuation correction on PET/MRI and dedicated brain PET scanners with lower computational time using CPU-based processors.

Computationally Efficient Diffusion Models in Medical Imaging: A Comprehensive Review

Abdullah, Tao Huang, Ickjai Lee, Euijoon Ahn

arxiv logopreprintMay 9 2025
The diffusion model has recently emerged as a potent approach in computer vision, demonstrating remarkable performances in the field of generative artificial intelligence. Capable of producing high-quality synthetic images, diffusion models have been successfully applied across a range of applications. However, a significant challenge remains with the high computational cost associated with training and generating these models. This study focuses on the efficiency and inference time of diffusion-based generative models, highlighting their applications in both natural and medical imaging. We present the most recent advances in diffusion models by categorizing them into three key models: the Denoising Diffusion Probabilistic Model (DDPM), the Latent Diffusion Model (LDM), and the Wavelet Diffusion Model (WDM). These models play a crucial role in medical imaging, where producing fast, reliable, and high-quality medical images is essential for accurate analysis of abnormalities and disease diagnosis. We first investigate the general framework of DDPM, LDM, and WDM and discuss the computational complexity gap filled by these models in natural and medical imaging. We then discuss the current limitations of these models as well as the opportunities and future research directions in medical imaging.

Phenotype-Guided Generative Model for High-Fidelity Cardiac MRI Synthesis: Advancing Pretraining and Clinical Applications

Ziyu Li, Yujian Hu, Zhengyao Ding, Yiheng Mao, Haitao Li, Fan Yi, Hongkun Zhang, Zhengxing Huang

arxiv logopreprintMay 6 2025
Cardiac Magnetic Resonance (CMR) imaging is a vital non-invasive tool for diagnosing heart diseases and evaluating cardiac health. However, the limited availability of large-scale, high-quality CMR datasets poses a major challenge to the effective application of artificial intelligence (AI) in this domain. Even the amount of unlabeled data and the health status it covers are difficult to meet the needs of model pretraining, which hinders the performance of AI models on downstream tasks. In this study, we present Cardiac Phenotype-Guided CMR Generation (CPGG), a novel approach for generating diverse CMR data that covers a wide spectrum of cardiac health status. The CPGG framework consists of two stages: in the first stage, a generative model is trained using cardiac phenotypes derived from CMR data; in the second stage, a masked autoregressive diffusion model, conditioned on these phenotypes, generates high-fidelity CMR cine sequences that capture both structural and functional features of the heart in a fine-grained manner. We synthesized a massive amount of CMR to expand the pretraining data. Experimental results show that CPGG generates high-quality synthetic CMR data, significantly improving performance on various downstream tasks, including diagnosis and cardiac phenotypes prediction. These gains are demonstrated across both public and private datasets, highlighting the effectiveness of our approach. Code is availabel at https://anonymous.4open.science/r/CPGG.

Path and Bone-Contour Regularized Unpaired MRI-to-CT Translation

Teng Zhou, Jax Luo, Yuping Sun, Yiheng Tan, Shun Yao, Nazim Haouchine, Scott Raymond

arxiv logopreprintMay 6 2025
Accurate MRI-to-CT translation promises the integration of complementary imaging information without the need for additional imaging sessions. Given the practical challenges associated with acquiring paired MRI and CT scans, the development of robust methods capable of leveraging unpaired datasets is essential for advancing the MRI-to-CT translation. Current unpaired MRI-to-CT translation methods, which predominantly rely on cycle consistency and contrastive learning frameworks, frequently encounter challenges in accurately translating anatomical features that are highly discernible on CT but less distinguishable on MRI, such as bone structures. This limitation renders these approaches less suitable for applications in radiation therapy, where precise bone representation is essential for accurate treatment planning. To address this challenge, we propose a path- and bone-contour regularized approach for unpaired MRI-to-CT translation. In our method, MRI and CT images are projected to a shared latent space, where the MRI-to-CT mapping is modeled as a continuous flow governed by neural ordinary differential equations. The optimal mapping is obtained by minimizing the transition path length of the flow. To enhance the accuracy of translated bone structures, we introduce a trainable neural network to generate bone contours from MRI and implement mechanisms to directly and indirectly encourage the model to focus on bone contours and their adjacent regions. Evaluations conducted on three datasets demonstrate that our method outperforms existing unpaired MRI-to-CT translation approaches, achieving lower overall error rates. Moreover, in a downstream bone segmentation task, our approach exhibits superior performance in preserving the fidelity of bone structures. Our code is available at: https://github.com/kennysyp/PaBoT.
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