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Physiological Confounds in BOLD-fMRI and Their Correction.

Addeh A, Williams RJ, Golestani A, Pike GB, MacDonald ME

pubmed logopapersJul 1 2025
Functional magnetic resonance imaging (fMRI) has opened new frontiers in neuroscience by instrumentally driving our understanding of brain function and development. Despite its substantial successes, fMRI studies persistently encounter obstacles stemming from inherent, unavoidable physiological confounds. The adverse effects of these confounds are especially noticeable with higher magnetic fields, which have been gaining momentum in fMRI experiments. This review focuses on the four major physiological confounds impacting fMRI studies: low-frequency fluctuations in both breathing depth and rate, low-frequency fluctuations in the heart rate, thoracic movements, and cardiac pulsatility. Over the past three decades, numerous correction techniques have emerged to address these challenges. Correction methods have effectively enhanced the detection of task-activated voxels and minimized the occurrence of false positives and false negatives in functional connectivity studies. While confound correction methods have merit, they also have certain limitations. For instance, model-based approaches require externally recorded physiological data that is often unavailable in fMRI studies. Methods reliant on independent component analysis, on the other hand, need prior knowledge about the number of components. Machine learning techniques, although showing potential, are still in the early stages of development and require additional validation. This article reviews the mechanics of physiological confound correction methods, scrutinizes their performance and limitations, and discusses their impact on fMRI studies.

Acquisition and Reconstruction Techniques for Coronary CT Angiography: Current Status and Trends over the Past Decade.

Fukui R, Harashima S, Samejima W, Shimizu Y, Washizuka F, Kariyasu T, Nishikawa M, Yamaguchi H, Takeuchi H, Machida H

pubmed logopapersJul 1 2025
Coronary CT angiography (CCTA) has been widely used as a noninvasive modality for accurate assessment of coronary artery disease (CAD) in clinical settings. However, the following limitations of CCTA remain issues of interest: motion, stair-step, and blooming artifacts; suboptimal image noise; ionizing radiation exposure; administration of contrast medium; and complex imaging workflow. Various acquisition and reconstruction techniques have been introduced over the past decade to overcome these limitations. Low-tube-voltage acquisition using a high-output x-ray tube can reasonably reduce the contrast medium and radiation dose. Fast x-ray tube and gantry rotation, dual-source CT, and a motion-correction algorithm (MCA) can improve temporal resolution and reduce coronary motion artifacts. High-definition CT (HDCT), ultrahigh-resolution CT (UHRCT), and superresolution deep learning reconstruction (DLR) algorithms can improve the spatial resolution and delineation of the vessel lumen with coronary calcifications or stents by reducing blooming artifacts. Whole-heart coverage using area-detector CT can eliminate stair-step artifacts. The DLR algorithm can effectively reduce image noise and radiation dose while maintaining image quality, particularly during high-resolution acquisition using HDCT or UHRCT, during low-tube-voltage acquisition, or when imaging patients with a large body habitus. Automatic cardiac protocol selection, automatic optimal cardiac phase selection, and MCA can improve the imaging workflow for each CCTA examination. A sufficient understanding of current and novel acquisition and reconstruction techniques is important to enhance the clinical value of CCTA for noninvasive assessment of CAD. <sup>©</sup>RSNA, 2025 Supplemental material is available for this article.

Agreement between Routine-Dose and Lower-Dose CT with and without Deep Learning-based Denoising for Active Surveillance of Solid Small Renal Masses: A Multiobserver Study.

Borgbjerg J, Breen BS, Kristiansen CH, Larsen NE, Medrud L, Mikalone R, Müller S, Naujokaite G, Negård A, Nielsen TK, Salte IM, Frøkjær JB

pubmed logopapersJul 1 2025
Purpose To assess the agreement between routine-dose (RD) and lower-dose (LD) contrast-enhanced CT scans, with and without Digital Imaging and Communications in Medicine-based deep learning-based denoising (DLD), in evaluating small renal masses (SRMs) during active surveillance. Materials and Methods In this retrospective study, CT scans from patients undergoing active surveillance for an SRM were included. Using a validated simulation technique, LD CT images were generated from the RD images to simulate 75% (LD75) and 90% (LD90) radiation dose reductions. Two additional LD image sets, in which the DLD was applied (LD75-DLD and LD90-DLD), were generated. Between January 2023 and June 2024, nine radiologists from three institutions independently evaluated 350 CT scans across five datasets for tumor size, tumor nearness to the collecting system (TN), and tumor shape irregularity (TSI), and interobserver reproducibility and agreement were assessed using the 95% limits of agreement with the mean (LOAM) and Gwet AC2 coefficient, respectively. Subjective and quantitative image quality assessments were also performed. Results The study sample included 70 patients (mean age, 73.2 years ± 9.2 [SD]; 48 male, 22 female). LD75 CT was found to be in agreement with RD scans for assessing SRM diameter, with a LOAM of ±2.4 mm (95% CI: 2.3, 2.6) for LD75 compared with ±2.2 mm (95% CI: 2.1, 2.4) for RD. However, a 90% dose reduction compromised reproducibility (LOAM ±3.0 mm; 95% CI: 2.8, 3.2). LD90-DLD preserved measurement reproducibility (LOAM ±2.4 mm; 95% CI: 2.3, 2.6). Observer agreement was comparable between TN and TSI assessments across all image sets, with no statistically significant differences identified (all comparisons <i>P</i> ≥ .35 for TN and <i>P</i> ≥ .02 for TSI; Holm-corrected significance threshold, <i>P</i> = .013). Subjective and quantitative image quality assessments confirmed that DLD effectively restored image quality at reduced dose levels: LD75-DLD had the highest overall image quality, significantly lower noise, and improved contrast-to-noise ratio compared with RD (<i>P</i> < .001). Conclusion A 75% reduction in radiation dose is feasible for SRM assessment in active surveillance using CT with a conventional iterative reconstruction technique, whereas applying DLD allows submillisievert dose reduction. <b>Keywords:</b> CT, Urinary, Kidney, Radiation Safety, Observer Performance, Technology Assessment <i>Supplemental material is available for this article.</i> © RSNA, 2025 See also commentary by Muglia in this issue.

Deep learning image reconstruction and adaptive statistical iterative reconstruction on coronary artery calcium scoring in high risk population for coronary heart disease.

Zhu L, Shi X, Tang L, Machida H, Yang L, Ma M, Ha R, Shen Y, Wang F, Chen D

pubmed logopapersJul 1 2025
Deep learning image reconstruction (DLIR) technology effectively improves the image quality while maintaining spatial resolution. The impact of DLIR on the quantification of coronary artery calcium (CAC) is still unclear. The purpose of this study was to investigate the effect of DLIR on the quantification of coronary calcium in high-risk populations. A retrospective study was conducted on patients who underwent coronary artery CT angiography (CCTA) at our hospital(China) from February 2022 to September 2022. Raw data were reconstructed with filtered back projection (FBP) reconstruction, 40% and 80% level adaptive statistical iterative reconstruction-veo (ASiR-V 40%, ASiR-V 80%) and low, medium and high-level deep learning algorithm (DLIR-L, DLIR-M, and DLIR-H). Calculate and compare the signal-to-noise and contrast-to-noise ratio, volumetric score, mass scores, and Agaston score of 6 sets of images. There were 178 patients, female (107), mean age (62.43 ± 9.26), and mean BMI (25.33 ± 3.18) kg/m<sup>2</sup>. Compared with FBP, the image noise of ASiR-V and DLIR was significantly reduced (P < 0.001). There was no significant difference in Agaston score, volumetric score, and mass scores among the six reconstruction algorithms (all P > 0.05). Bland-Altman diagram indicated that the Agatston scores of the five reconstruction algorithms showed good agreement with FBP, with DLIR-L(AUC, 110.08; 95% CI: 26.48, 432.92;)and ASIR-V40% (AUC,110.96; 95% CI: 26.23, 431.34;) having the highest consistency with FBP. Compared with FBP, DLIR and ASiR-V improve CT image quality to varying degrees while having no impact on Agatston score-based risk stratification. CACS is a powerful tool for cardiovascular risk stratification, and DLIR can improve image quality without affecting CACS, making it widely applicable in clinical practice.

GAN-based Denoising for Scan Time Reduction and Motion Correction of 18F FP-CIT PET/CT: A Multicenter External Validation Study.

Han H, Choo K, Jeon TJ, Lee S, Seo S, Kim D, Kim SJ, Lee SH, Yun M

pubmed logopapersJul 1 2025
AI-driven scan time reduction is rapidly transforming medical imaging with benefits such as improved patient comfort and enhanced efficiency. A Dual Contrastive Learning Generative Adversarial Network (DCLGAN) was developed to predict full-time PET scans from shorter, noisier scans, improving challenges in imaging patients with movement disorders. 18F FP-CIT PET/CT data from 391 patients with suspected Parkinsonism were used [250 training/validation, 141 testing (hospital A)]. Ground truth (GT) images were reconstructed from 15-minute scans, while denoised images (DIs) were generated from 1-, 3-, 5-, and 10-minute scans. Image quality was assessed using normalized root mean square error (NRMSE), peak signal-to-noise ratio (PSNR), structural similarity index measure (SSIM), visual analysis, and clinical metrics like BPND and ISR for diagnosis of non-neurodegenerative Parkinson disease (NPD), idiopathic PD (IPD), and atypical PD (APD). External validation used data from 2 hospitals with different scanners (hospital B: 1-, 3-, 5-, and 10-min; hospital C: 1-, 3-, and 5-min). In addition, motion artifact reduction was evaluated using the Dice similarity coefficient (DSC). In hospital A, NRMSE, PSNR, and SSIM values improved with scan duration, with the 5-minute DIs achieving optimal quality (NRMSE 0.008, PSNR 42.13, SSIM 0.98). Visual analysis rated DIs from scans ≥3 minutes as adequate or higher. The mean BPND differences (95% CI) for each DIs were 0.19 (-0.01, 0.40), 0.11 (-0.02, 0.24), 0.08 (-0.03, 0.18), and 0.01 (-0.06, 0.07), with the CIs significantly decreasing. ISRs with the highest effect sizes for differentiating NPD, IPD, and APD (PP/AP, PP/VS, PC/VP) remained stable post-denoising. External validation showed 10-minute DIs (hospital B) and 1-minute DIs (hospital C) reached benchmarks of hospital A's image quality metrics, with similar trends in visual analysis and BPND CIs. Furthermore, motion artifact correction in 9 patients yielded DSC improvements from 0.89 to 0.95 in striatal regions. The DL-model is capable of generating high-quality 18F FP-CIT PET images from shorter scans to enhance patient comfort, minimize motion artifacts, and maintain diagnostic precision. Furthermore, our study plays an important role in providing insights into how imaging quality assessment metrics can be used to determine the appropriate scan duration for different scanners with varying sensitivities.

How I Do It: Three-Dimensional MR Neurography and Zero Echo Time MRI for Rendering of Peripheral Nerve and Bone.

Lin Y, Tan ET, Campbell G, Breighner RE, Fung M, Wolfe SW, Carrino JA, Sneag DB

pubmed logopapersJul 1 2025
MR neurography sequences provide excellent nerve-to-background soft tissue contrast, whereas a zero echo time (ZTE) MRI sequence provides cortical bone contrast. By demonstrating the spatial relationship between nerves and bones, a combination of rendered three-dimensional (3D) MR neurography and ZTE sequences provides a roadmap for clinical decision-making, particularly for surgical intervention. In this article, the authors describe the method for fused rendering of peripheral nerve and bone by combining nerve and bone structures from 3D MR neurography and 3D ZTE MRI, respectively. The described method includes scanning acquisition, postprocessing that entails deep learning-based reconstruction techniques, and rendering techniques. Representative case examples demonstrate the steps and clinical use of these techniques. Challenges in nerve and bone rendering are also discussed.

Patient radiation safety in the intensive care unit.

Quaia E

pubmed logopapersJul 1 2025
The aim of this commentary review was to summarize the main research evidences on radiation exposure and to underline the best clinical and radiological practices to limit radiation exposure in ICU patients. Radiological imaging is essential for management of patients in the ICU despite the risk of ionizing radiation exposure in monitoring critically ill patients, especially in those with prolonged hospitalization. In optimizing radiation exposure reduction for ICU patients, multiple parties and professionals must be considered, including hospital management, clinicians, radiographers, and radiologists. Modified diagnostic reference levels for ICU patients, based on UK guidance, may be proposed, especially considering the frequent repetition of x-ray diagnostic procedures in ICU patients. Best practices may reduce radiation exposure in ICU patients with particular emphasis on justification and radiation exposure optimization in conventional radiology, interventional radiology and fluoroscopy, CT, and nuclear medicine. CT contributes most predominately to radiation exposure in ICU patients. Low-dose (<1 mSv in effective dose) or even ultra-low-dose CT protocols, iterative reconstruction algorithms, and artificial intelligence-based innovative dose-reduction strategies could reduce radiation exposure and related oncogenic risks.

<sup>18</sup>F-FDG dose reduction using deep learning-based PET reconstruction.

Akita R, Takauchi K, Ishibashi M, Kondo S, Ono S, Yokomachi K, Ochi Y, Kiguchi M, Mitani H, Nakamura Y, Awai K

pubmed logopapersJul 1 2025
A deep learning-based image reconstruction (DLR) algorithm that can reduce the statistical noise has been developed for PET/CT imaging. It may reduce the administered dose of <sup>18</sup>F-FDG and minimize radiation exposure while maintaining diagnostic quality. This retrospective study evaluated whether the injected <sup>18</sup>F-FDG dose could be reduced by applying DLR to PET images. To this aim, we compared the quantitative image quality metrics and the false-positive rate between DLR with a reduced <sup>18</sup>F-FDG dose and Ordered Subsets Expectation Maximization (OSEM) with a standard dose. This study included 90 oncology patients who underwent <sup>18</sup>F-FDG PET/CT. They were divided into 3 groups (30 patients each): group A (<sup>18</sup>F-FDG dose per body weight [BW]: 2.00-2.99 MBq/kg; PET image reconstruction: DLR), group B (3.00-3.99 MBq/kg; DLR), and group C (standard dose group; 4.00-4.99 MBq/kg; OSEM). The evaluation was performed using the signal-to-noise ratio (SNR), target-to-background ratio (TBR), and false-positive rate. DLR yielded significantly higher SNRs in groups A and B than group C (p < 0.001). There was no significant difference in the TBR between groups A and C, and between groups B and C (p = 0.983 and 0.605, respectively). In group B, more than 80% of patients weighing less than 75 kg had at most one false positive result. In contrast, in group B patients weighing 75 kg or more, as well as in group A, less than 80% of patients had at most one false-positives. Our findings suggest that the injected <sup>18</sup>F-FDG dose can be reduced to 3.0 MBq/kg in patients weighing less than 75 kg by applying DLR. Compared to the recommended dose in the European Association of Nuclear Medicine (EANM) guidelines for 90 s per bed position (4.7 MBq/kg), this represents a dose reduction of 36%. Further optimization of DLR algorithms is required to maintain comparable diagnostic accuracy in patients weighing 75 kg or more.

Deep learning model for low-dose CT late iodine enhancement imaging and extracellular volume quantification.

Yu Y, Wu D, Lan Z, Dai X, Yang W, Yuan J, Xu Z, Wang J, Tao Z, Ling R, Zhang S, Zhang J

pubmed logopapersJul 1 2025
To develop and validate deep learning (DL)-models that denoise late iodine enhancement (LIE) images and enable accurate extracellular volume (ECV) quantification. This study retrospectively included patients with chest discomfort who underwent CT myocardial perfusion + CT angiography + LIE from two hospitals. Two DL models, residual dense network (RDN) and conditional generative adversarial network (cGAN), were developed and validated. 423 patients were randomly divided into training (182 patients), tuning (48 patients), internal validation (92 patients) and external validation group (101 patients). LIE<sub>single</sub> (single-stack image), LIE<sub>averaging</sub> (averaging multiple-stack images), LIE<sub>RDN</sub> (single-stack image denoised by RDN) and LIE<sub>GAN</sub> (single-stack image denoised by cGAN) were generated. We compared image quality score, signal-to-noise (SNR) and contrast-to-noise (CNR) of four LIE sets. The identifiability of denoised images for positive LIE and increased ECV (> 30%) was assessed. The image quality of LIE<sub>GAN</sub> (SNR: 13.3 ± 1.9; CNR: 4.5 ± 1.1) and LIE<sub>RDN</sub> (SNR: 20.5 ± 4.7; CNR: 7.5 ± 2.3) images was markedly better than that of LIE<sub>single</sub> (SNR: 4.4 ± 0.7; CNR: 1.6 ± 0.4). At per-segment level, the area under the curve (AUC) of LIE<sub>RDN</sub> images for LIE evaluation was significantly improved compared with those of LIE<sub>GAN</sub> and LIE<sub>single</sub> images (p = 0.040 and p < 0.001, respectively). Meanwhile, the AUC and accuracy of ECV<sub>RDN</sub> were significantly higher than those of ECV<sub>GAN</sub> and ECV<sub>single</sub> at per-segment level (p < 0.001 for all). RDN model generated denoised LIE images with markedly higher SNR and CNR than the cGAN-model and original images, which significantly improved the identifiability of visual analysis. Moreover, using denoised single-stack images led to accurate CT-ECV quantification. Question Can the developed models denoise CT-derived late iodine enhancement high images and improve signal-to-noise ratio? Findings The residual dense network model significantly improved the image quality for late iodine enhancement and enabled accurate CT- extracellular volume quantification. Clinical relevance The residual dense network model generates denoised late iodine enhancement images with the highest signal-to-noise ratio and enables accurate quantification of extracellular volume.
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