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Longitudinal Validation of a Deep Learning Index for Aortic Stenosis Progression

Park, J., Kim, J., Yoon, Y. E., Jeon, J., Lee, S.-A., Choi, H.-M., Hwang, I.-C., Cho, G.-Y., Chang, H.-J., Park, J.-H.

medrxiv logopreprintMay 19 2025
AimsAortic stenosis (AS) is a progressive disease requiring timely monitoring and intervention. While transthoracic echocardiography (TTE) remains the diagnostic standard, deep learning (DL)-based approaches offer potential for improved disease tracking. This study examined the longitudinal changes in a previously developed DL-derived index for AS continuum (DLi-ASc) and assessed its value in predicting progression to severe AS. Methods and ResultsWe retrospectively analysed 2,373 patients a(7,371 TTEs) from two tertiary hospitals. DLi-ASc (scaled 0-100), derived from parasternal long- and/or short-axis views, was tracked longitudinally. DLi-ASc increased in parallel with worsening AS stages (p for trend <0.001) and showed strong correlations with AV maximal velocity (Vmax) (Pearson correlation coefficients [PCC] = 0.69, p<0.001) and mean pressure gradient (mPG) (PCC = 0.66, p<0.001). Higher baseline DLi-ASc was associated with a faster AS progression rate (p for trend <0.001). Additionally, the annualised change in DLi-ASc, estimated using linear mixed-effect models, correlated strongly with the annualised progression of AV Vmax (PCC = 0.71, p<0.001) and mPG (PCC = 0.68, p<0.001). In Fine-Gray competing risk models, baseline DLi-ASc independently predicted progression to severe AS, even after adjustment for AV Vmax or mPG (hazard ratio per 10-point increase = 2.38 and 2.80, respectively) ConclusionDLi-ASc increased in parallel with AS progression and independently predicted severe AS progression. These findings support its role as a non-invasive imaging-based digital marker for longitudinal AS monitoring and risk stratification.

Deep learning feature-based model for predicting lymphovascular invasion in urothelial carcinoma of bladder using CT images.

Xiao B, Lv Y, Peng C, Wei Z, Xv Q, Lv F, Jiang Q, Liu H, Li F, Xv Y, He Q, Xiao M

pubmed logopapersMay 18 2025
Lymphovascular invasion significantly impacts the prognosis of urothelial carcinoma of the bladder. Traditional lymphovascular invasion detection methods are time-consuming and costly. This study aims to develop a deep learning-based model to preoperatively predict lymphovascular invasion status in urothelial carcinoma of bladder using CT images. Data and CT images of 577 patients across four medical centers were retrospectively collected. The largest tumor slices from the transverse, coronal, and sagittal planes were selected and used to train CNN models (InceptionV3, DenseNet121, ResNet18, ResNet34, ResNet50, and VGG11). Deep learning features were extracted and visualized using Grad-CAM. Principal Component Analysis reduced features to 64. Using the extracted features, Decision Tree, XGBoost, and LightGBM models were trained with 5-fold cross-validation and ensembled in a stacking model. Clinical risk factors were identified through logistic regression analyses and combined with DL scores to enhance lymphovascular invasion prediction accuracy. The ResNet50-based model achieved an AUC of 0.818 in the validation set and 0.708 in the testing set. The combined model showed an AUC of 0.794 in the validation set and 0.767 in the testing set, demonstrating robust performance across diverse data. We developed a robust radiomics model based on deep learning features from CT images to preoperatively predict lymphovascular invasion status in urothelial carcinoma of the bladder. This model offers a non-invasive, cost-effective tool to assist clinicians in personalized treatment planning. We developed a robust radiomics model based on deep learning features from CT images to preoperatively predict lymphovascular invasion status in urothelial carcinoma of the bladder. We developed a deep learning feature-based stacking model to predict lymphovascular invasion in urothelial carcinoma of the bladder patients using CT. Max cross sections from three dimensions of the CT image are used to train the CNN model. We made comparisons across six CNN networks, including ResNet50.

ChatGPT-4-Driven Liver Ultrasound Radiomics Analysis: Advantages and Drawbacks Compared to Traditional Techniques.

Sultan L, Venkatakrishna SSB, Anupindi S, Andronikou S, Acord M, Otero H, Darge K, Sehgal C, Holmes J

pubmed logopapersMay 18 2025
Artificial intelligence (AI) is transforming medical imaging, with large language models such as ChatGPT-4 emerging as potential tools for automated image interpretation. While AI-driven radiomics has shown promise in diagnostic imaging, the efficacy of ChatGPT-4 in liver ultrasound analysis remains largely unexamined. This study evaluates the capability of ChatGPT-4 in liver ultrasound radiomics, specifically its ability to differentiate fibrosis, steatosis, and normal liver tissue, compared to conventional image analysis software. Seventy grayscale ultrasound images from a preclinical liver disease model, including fibrosis (n=31), fatty liver (n=18), and normal liver (n=21), were analyzed. ChatGPT-4 extracted texture features, which were compared to those obtained using Interactive Data Language (IDL), a traditional image analysis software. One-way ANOVA was used to identify statistically significant features differentiating liver conditions, and logistic regression models were employed to assess diagnostic performance. ChatGPT-4 extracted nine key textural features-echo intensity, heterogeneity, skewness, kurtosis, contrast, homogeneity, dissimilarity, angular second moment, and entropy-all of which significantly differed across liver conditions (p < 0.05). Among individual features, echo intensity achieved the highest F1-score (0.85). When combined, ChatGPT-4 attained 76% accuracy and 83% sensitivity in classifying liver disease. ROC analysis demonstrated strong discriminatory performance, with AUC values of 0.75 for fibrosis, 0.87 for normal liver, and 0.97 for steatosis. Compared to Interactive Data Language (IDL) image analysis software, ChatGPT-4 exhibited slightly lower sensitivity (0.83 vs. 0.89) but showed moderate correlation (R = 0.68, p < 0.0001) with IDL-derived features. However, it significantly outperformed IDL in processing efficiency, reducing analysis time by 40%, highlighting its potential for high throughput radiomic analysis. Despite slightly lower sensitivity than IDL, ChatGPT-4 demonstrated high feasibility for ultrasound radiomics, offering faster processing, high-throughput analysis, and automated multi-image evaluation. These findings support its potential integration into AI-driven imaging workflows, with further refinements needed to enhance feature reproducibility and diagnostic accuracy.

Attention-Enhanced U-Net for Accurate Segmentation of COVID-19 Infected Lung Regions in CT Scans

Amal Lahchim, Lazar Davic

arxiv logopreprintMay 18 2025
In this study, we propose a robust methodology for automatic segmentation of infected lung regions in COVID-19 CT scans using convolutional neural networks. The approach is based on a modified U-Net architecture enhanced with attention mechanisms, data augmentation, and postprocessing techniques. It achieved a Dice coefficient of 0.8658 and mean IoU of 0.8316, outperforming other methods. The dataset was sourced from public repositories and augmented for diversity. Results demonstrate superior segmentation performance. Future work includes expanding the dataset, exploring 3D segmentation, and preparing the model for clinical deployment.

SMURF: Scalable method for unsupervised reconstruction of flow in 4D flow MRI

Atharva Hans, Abhishek Singh, Pavlos Vlachos, Ilias Bilionis

arxiv logopreprintMay 18 2025
We introduce SMURF, a scalable and unsupervised machine learning method for simultaneously segmenting vascular geometries and reconstructing velocity fields from 4D flow MRI data. SMURF models geometry and velocity fields using multilayer perceptron-based functions incorporating Fourier feature embeddings and random weight factorization to accelerate convergence. A measurement model connects these fields to the observed image magnitude and phase data. Maximum likelihood estimation and subsampling enable SMURF to process high-dimensional datasets efficiently. Evaluations on synthetic, in vitro, and in vivo datasets demonstrate SMURF's performance. On synthetic internal carotid artery aneurysm data derived from CFD, SMURF achieves a quarter-voxel segmentation accuracy across noise levels of up to 50%, outperforming the state-of-the-art segmentation method by up to double the accuracy. In an in vitro experiment on Poiseuille flow, SMURF reduces velocity reconstruction RMSE by approximately 34% compared to raw measurements. In in vivo internal carotid artery aneurysm data, SMURF attains nearly half-voxel segmentation accuracy relative to expert annotations and decreases median velocity divergence residuals by about 31%, with a 27% reduction in the interquartile range. These results indicate that SMURF is robust to noise, preserves flow structure, and identifies patient-specific morphological features. SMURF advances 4D flow MRI accuracy, potentially enhancing the diagnostic utility of 4D flow MRI in clinical applications.

Mutual Evidential Deep Learning for Medical Image Segmentation

Yuanpeng He, Yali Bi, Lijian Li, Chi-Man Pun, Wenpin Jiao, Zhi Jin

arxiv logopreprintMay 18 2025
Existing semi-supervised medical segmentation co-learning frameworks have realized that model performance can be diminished by the biases in model recognition caused by low-quality pseudo-labels. Due to the averaging nature of their pseudo-label integration strategy, they fail to explore the reliability of pseudo-labels from different sources. In this paper, we propose a mutual evidential deep learning (MEDL) framework that offers a potentially viable solution for pseudo-label generation in semi-supervised learning from two perspectives. First, we introduce networks with different architectures to generate complementary evidence for unlabeled samples and adopt an improved class-aware evidential fusion to guide the confident synthesis of evidential predictions sourced from diverse architectural networks. Second, utilizing the uncertainty in the fused evidence, we design an asymptotic Fisher information-based evidential learning strategy. This strategy enables the model to initially focus on unlabeled samples with more reliable pseudo-labels, gradually shifting attention to samples with lower-quality pseudo-labels while avoiding over-penalization of mislabeled classes in high data uncertainty samples. Additionally, for labeled data, we continue to adopt an uncertainty-driven asymptotic learning strategy, gradually guiding the model to focus on challenging voxels. Extensive experiments on five mainstream datasets have demonstrated that MEDL achieves state-of-the-art performance.

From Low Field to High Value: Robust Cortical Mapping from Low-Field MRI

Karthik Gopinath, Annabel Sorby-Adams, Jonathan W. Ramirez, Dina Zemlyanker, Jennifer Guo, David Hunt, Christine L. Mac Donald, C. Dirk Keene, Timothy Coalson, Matthew F. Glasser, David Van Essen, Matthew S. Rosen, Oula Puonti, W. Taylor Kimberly, Juan Eugenio Iglesias

arxiv logopreprintMay 18 2025
Three-dimensional reconstruction of cortical surfaces from MRI for morphometric analysis is fundamental for understanding brain structure. While high-field MRI (HF-MRI) is standard in research and clinical settings, its limited availability hinders widespread use. Low-field MRI (LF-MRI), particularly portable systems, offers a cost-effective and accessible alternative. However, existing cortical surface analysis tools are optimized for high-resolution HF-MRI and struggle with the lower signal-to-noise ratio and resolution of LF-MRI. In this work, we present a machine learning method for 3D reconstruction and analysis of portable LF-MRI across a range of contrasts and resolutions. Our method works "out of the box" without retraining. It uses a 3D U-Net trained on synthetic LF-MRI to predict signed distance functions of cortical surfaces, followed by geometric processing to ensure topological accuracy. We evaluate our method using paired HF/LF-MRI scans of the same subjects, showing that LF-MRI surface reconstruction accuracy depends on acquisition parameters, including contrast type (T1 vs T2), orientation (axial vs isotropic), and resolution. A 3mm isotropic T2-weighted scan acquired in under 4 minutes, yields strong agreement with HF-derived surfaces: surface area correlates at r=0.96, cortical parcellations reach Dice=0.98, and gray matter volume achieves r=0.93. Cortical thickness remains more challenging with correlations up to r=0.70, reflecting the difficulty of sub-mm precision with 3mm voxels. We further validate our method on challenging postmortem LF-MRI, demonstrating its robustness. Our method represents a step toward enabling cortical surface analysis on portable LF-MRI. Code is available at https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAny

OpenPros: A Large-Scale Dataset for Limited View Prostate Ultrasound Computed Tomography

Hanchen Wang, Yixuan Wu, Yinan Feng, Peng Jin, Shihang Feng, Yiming Mao, James Wiskin, Baris Turkbey, Peter A. Pinto, Bradford J. Wood, Songting Luo, Yinpeng Chen, Emad Boctor, Youzuo Lin

arxiv logopreprintMay 18 2025
Prostate cancer is one of the most common and lethal cancers among men, making its early detection critically important. Although ultrasound imaging offers greater accessibility and cost-effectiveness compared to MRI, traditional transrectal ultrasound methods suffer from low sensitivity, especially in detecting anteriorly located tumors. Ultrasound computed tomography provides quantitative tissue characterization, but its clinical implementation faces significant challenges, particularly under anatomically constrained limited-angle acquisition conditions specific to prostate imaging. To address these unmet needs, we introduce OpenPros, the first large-scale benchmark dataset explicitly developed for limited-view prostate USCT. Our dataset includes over 280,000 paired samples of realistic 2D speed-of-sound (SOS) phantoms and corresponding ultrasound full-waveform data, generated from anatomically accurate 3D digital prostate models derived from real clinical MRI/CT scans and ex vivo ultrasound measurements, annotated by medical experts. Simulations are conducted under clinically realistic configurations using advanced finite-difference time-domain and Runge-Kutta acoustic wave solvers, both provided as open-source components. Through comprehensive baseline experiments, we demonstrate that state-of-the-art deep learning methods surpass traditional physics-based approaches in both inference efficiency and reconstruction accuracy. Nevertheless, current deep learning models still fall short of delivering clinically acceptable high-resolution images with sufficient accuracy. By publicly releasing OpenPros, we aim to encourage the development of advanced machine learning algorithms capable of bridging this performance gap and producing clinically usable, high-resolution, and highly accurate prostate ultrasound images. The dataset is publicly accessible at https://open-pros.github.io/.

Machine Learning-Based Dose Prediction in [<sup>177</sup>Lu]Lu-PSMA-617 Therapy by Integrating Biomarkers and Radiomic Features from [<sup>68</sup>Ga]Ga-PSMA-11 PET/CT.

Yazdani E, Sadeghi M, Karamzade-Ziarati N, Jabari P, Amini P, Vosoughi H, Akbari MS, Asadi M, Kheradpisheh SR, Geramifar P

pubmed logopapersMay 18 2025
The study aimed to develop machine learning (ML) models for pretherapy prediction of absorbed doses (ADs) in kidneys and tumoral lesions for metastatic castration-resistant prostate cancer (mCRPC) patients undergoing [<sup>177</sup>Lu]Lu-PSMA-617 (Lu-PSMA) radioligand therapy (RLT). By leveraging radiomic features (RFs) from [<sup>68</sup>Ga]Ga-PSMA-11 (Ga-PSMA) PET/CT scans and clinical biomarkers (CBs), the approach has the potential to improve patient selection and tailor dosimetry-guided therapy. Twenty patients with mCRPC underwent Ga-PSMA PET/CT scans prior to the administration of an initial 6.8±0.4 GBq dose of the first Lu-PSMA RLT cycle. Post-therapy dosimetry involved sequential scintigraphy imaging at approximately 4, 48, and 72 h, along with a SPECT/CT image at around 48 h, to calculate time-integrated activity (TIA) coefficients. Monte Carlo (MC) simulations, leveraging the Geant4 application for tomographic emission (GATE) toolkit, were employed to derive ADs. The ML models were trained using pretherapy RFs from Ga-PSMA PET/CT and CBs as input, while the ADs in kidneys and lesions (n=130), determined using MC simulations from scintigraphy and SPECT imaging, served as the ground truth. Model performance was assessed through leave-one-out cross-validation (LOOCV), with evaluation metrics including R² and root mean squared error (RMSE). The mean delivered ADs were 0.88 ± 0.34 Gy/GBq for kidneys and 2.36 ± 2.10 Gy/GBq for lesions. Combining CBs with the best RFs produced optimal results: the extra trees regressor (ETR) was the best ML model for predicting kidney ADs, achieving an RMSE of 0.11 Gy/GBq and an R² of 0.87. For lesion ADs, the gradient boosting regressor (GBR) performed best, with an RMSE of 1.04 Gy/GBq and an R² of 0.77. Integrating pretherapy Ga-PSMA PET/CT RFs with CBs shows potential in predicting ADs in RLT. To personalize treatment planning and enhance patient stratification, it is crucial to validate these preliminary findings with a larger sample size and an independent cohort.

A Comprehensive Review of Techniques, Algorithms, Advancements, Challenges, and Clinical Applications of Multi-modal Medical Image Fusion for Improved Diagnosis

Muhammad Zubair, Muzammil Hussai, Mousa Ahmad Al-Bashrawi, Malika Bendechache, Muhammad Owais

arxiv logopreprintMay 18 2025
Multi-modal medical image fusion (MMIF) is increasingly recognized as an essential technique for enhancing diagnostic precision and facilitating effective clinical decision-making within computer-aided diagnosis systems. MMIF combines data from X-ray, MRI, CT, PET, SPECT, and ultrasound to create detailed, clinically useful images of patient anatomy and pathology. These integrated representations significantly advance diagnostic accuracy, lesion detection, and segmentation. This comprehensive review meticulously surveys the evolution, methodologies, algorithms, current advancements, and clinical applications of MMIF. We present a critical comparative analysis of traditional fusion approaches, including pixel-, feature-, and decision-level methods, and delves into recent advancements driven by deep learning, generative models, and transformer-based architectures. A critical comparative analysis is presented between these conventional methods and contemporary techniques, highlighting differences in robustness, computational efficiency, and interpretability. The article addresses extensive clinical applications across oncology, neurology, and cardiology, demonstrating MMIF's vital role in precision medicine through improved patient-specific therapeutic outcomes. Moreover, the review thoroughly investigates the persistent challenges affecting MMIF's broad adoption, including issues related to data privacy, heterogeneity, computational complexity, interpretability of AI-driven algorithms, and integration within clinical workflows. It also identifies significant future research avenues, such as the integration of explainable AI, adoption of privacy-preserving federated learning frameworks, development of real-time fusion systems, and standardization efforts for regulatory compliance.
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