The aim of this study was to automatically detect teeth with dens invaginatus (DI) in panoramic radiographs using deep learning algorithms and to compare the success of the algorithms. For this purpose, 400 panoramic radiographs with DI were collected from the faculty database and separated into 60% training, 20% validation and 20% test images. The training and validation images were labeled by oral, dental and maxillofacial radiologists and augmented with various augmentation methods, and the improved models were asked for the images allocated for the test phase and the results were evaluated according to performance measures including accuracy, sensitivity, F1 score and mean detection time. According to the test results, YOLOv8 achieved a precision, sensitivity and F1 score of 0.904 and was the fastest detection model with an average detection time of 0.041. The Faster R-CNN model achieved 0.912 precision, 0.904 sensitivity and 0.907 F1 score, with an average detection time of 0.1 s. The YOLOv9 algorithm showed the most successful performance with 0.946 precision, 0.930 sensitivity, 0.937 F1 score value and the average detection speed per image was 0.158 s. According to the results obtained, all models achieved over 90% success. YOLOv8 was relatively more successful in detection speed and YOLOv9 in other performance criteria. Faster R-CNN ranked second in all criteria.

Automatic segmentation of cervical tumors is important in quantitative analysis and radiotherapy planning. A parallel encoder U-Net (PEU-Net) integrating the multi-modality information of PET/MRI was proposed to segment cervical tumor, which consisted of two parallel encoders with the same structure for PET and MR images. The features of the two modalities were extracted separately and fused at each layer of the decoder. Res2Net module on skip connection aggregated the features of various scales and refined the segmentation performance. PET/MRI images of 165 patients with cervical cancer were included in this study. U-Net, TransUNet, and nnU-Net with single or multi-modality (PET or/and T2WI) input were used for comparison. The Dice similarity coefficient (DSC) with volume data, DSC and the 95th percentile of Hausdorff distance (HD95) with tumor slices were calculated to evaluate the performance. The proposed PEU-Net exhibited the best performance (DSC_3d: 0.726 ± 0.204, HD₉₅: 4.603 ± 4.579 mm), DSC_2d (0.871 ± 0.113) was comparable to the best result of TransUNet with PET/MRI (0.873 ± 0.125). The networks with multi-modality input outperformed those with single-modality images as input. The results showed that the proposed PEU-Net could use multi-modality information more effectively through the redesigned structure and achieved competitive performance.

Prognostic prediction is crucial to guide individual treatment for patients with rectal cancer. We aimed to develop and validated a multitask deep learning model for predicting prognosis in rectal cancer patients. This retrospective study enrolled 321 rectal cancer patients (training set: 212; internal testing set: 53; external testing set: 56) who directly received total mesorectal excision from five hospitals between March 2014 to April 2021. A multitask deep learning model was developed to simultaneously predict recurrence/metastasis and disease-free survival (DFS). The model integrated clinicopathologic data and multiparametric magnetic resonance imaging (MRI) images including diffusion kurtosis imaging (DKI), without performing tumor segmentation. The receiver operating characteristic (ROC) curve and Harrell's concordance index (C-index) were used to evaluate the predictive performance of the proposed model. The deep learning model achieved good discrimination capability of recurrence/metastasis, with area under the curve (AUC) values of 0.885, 0.846, and 0.797 in the training, internal testing and external testing sets, respectively. Furthermore, the model successfully predicted DFS in the training set (C-index: 0.812), internal testing set (C-index: 0.794), and external testing set (C-index: 0.733), and classified patients into significantly distinct high- and low-risk groups (p < 0.05). The multitask deep learning model, incorporating clinicopathologic data and multiparametric MRI, effectively predicted both recurrence/metastasis and survival for patients with rectal cancer. It has the potential to be an essential tool for risk stratification, and assist in making individualized treatment decisions. Not applicable.

Temporomandibular disorders (TMDs) are frequently associated with posterior condylar displacement; however, early prediction of this displacement remains a significant challenge. Therefore, in this study, we aimed to develop and evaluate a predictive model for bilateral posterior condylar displacement. In this retrospective observational study, 166 cone-beam computed tomography images were examined and categorized into two groups based on condyle positions as observed in the sagittal images of the joint space: those with bilateral posterior condylar displacement and those without. Three machine-learning algorithms-Random Forest, Least Absolute Shrinkage and Selection Operator (LASSO) regression, and Extreme Gradient Boosting (XGBoost)-were used to identify risk factors and establish a risk assessment model. Calibration curves, receiver operating characteristic curves, and decision curve analyses were employed to evaluate the accuracy of the predictions, differentiation, and clinical usefulness of the models, respectively. Articular eminence inclination (AEI) and age were identified as significant risk factors for bilateral posterior condylar displacement. The area under the curve values for the LASSO and Random Forest models were both > 0.7, indicating satisfactory discriminative ability of the nomogram. No significant differences were observed in the differentiation and calibration performance of the three models. Clinical utility analysis revealed that the LASSO regression model, which incorporated age, AEI, A point-nasion-B point (ANB) angle, and facial height ratio (S-Go/N-Me), demonstrated superior net benefit compared to the other models when the probability threshold exceeded 45%. Patients with a steeper AEI, insufficient posterior vertical distance (S-Go/N-Me), an ANB angle ≥ 4.7°, and older age are more likely to experience bilateral posterior condylar displacement. The prognostic nomogram developed and validated in this study may assist clinicians in assessing the risk of bilateral posterior condylar displacement.

To create an automated PET/CT segmentation method and radiomics model to forecast Mismatch repair (MMR) and TP53 gene expression in endometrial cancer patients, and to examine the effect of gene expression variability on image texture features. We generated two datasets in this retrospective and exploratory study. The first, with 123 histopathologically confirmed patient cases, was used to develop an endometrial cancer segmentation model. The second dataset, including 249 patients for MMR and 179 for TP53 mutation prediction, was derived from PET/CT exams and immunohistochemical analysis. A PET-based Attention-U Net network was used for segmentation, followed by region-growing with co-registered PET and CT images. Feature models were constructed using PET, CT, and combined data, with model selection based on performance comparison. Our segmentation model achieved 99.99% training accuracy and a dice coefficient of 97.35%, with validation accuracy at 99.93% and a dice coefficient of 84.81%. The combined PET + CT model demonstrated superior predictive power for both genes, with AUCs of 0.8146 and 0.8102 for MMR, and 0.8833 and 0.8150 for TP53 in training and test sets, respectively. MMR-related protein heterogeneity and TP53 expression differences were predominantly seen in PET images. An efficient deep learning algorithm for endometrial cancer segmentation has been established, highlighting the enhanced predictive power of integrated PET and CT radiomics for MMR and TP53 expression. The study underscores the distinct influences of MMR and TP53 gene expression on tumor characteristics.

Osteoporosis is a prevalent skeletal disorder characterized by reduced bone mineral density (BMD) and structural deterioration, resulting in increased fracture risk. Early diagnosis is crucial to prevent fractures and improve patient outcomes. This study investigates the diagnostic utility of morphometric and cortical indices derived from cone-beam computed tomography (CBCT) for identifying osteoporotic postmenopausal women who were candidates for dental implant therapy, with dual-energy X-ray absorptiometry (DXA) used as the reference standard. This cross-sectional study included 71 postmenopausal women, aged 50-79 years, who underwent CBCT imaging at the Oral and Maxillofacial Radiology Department of Hamadan University of Medical Sciences between 2022 and 2024. Participants with systemic conditions affecting bone metabolism were excluded. The morphometric indices-Computed Tomography Mandibular Index (CTMI), Computed Tomography Index Superior (CTI(S)), Computed Tomography Index Inferior (CTI(I)), and Computed Tomography Cortical Index (CTCI)-were measured at the mental foramen and antegonial regions using OnDemand3D Dental software. Bone mineral density (BMD) was assessed by DXA scans of the lumbar spine and femoral neck. In addition to traditional statistical analyses (Pearson's correlation and one-way ANOVA with LSD test), a multilayer perceptron (MLP) neural network model was employed to evaluate the diagnostic power of CBCT indices. DXA results based on the femoral neck T-scores categorized 38 patients as normal, 32 as osteopenic, and one as osteoporotic, while lumbar spine T-scores identified 38 normal, 22 osteopenic, and 11 osteoporotic patients. Significant differences (p < 0.05) were observed in most CBCT-derived indices, with the CTMI index demonstrating the most marked variation, especially between normal and osteoporotic groups (p < 0.001). Moreover, significant positive correlations were found between the CBCT indices and DXA T-scores across the lumbar spine, femoral neck, and total hip regions. The neural network model achieved an overall diagnostic accuracy of 75%, with the highest predictive importance attributed to antegonial CTCI and CTMI indices. This study highlights the significant correlation between CBCT-derived radiomorphometric indices such as CTMI, CTI(S), CTI(I), and CTCI at the mental foramen and antegonial regions and bone mineral density (BMD) in postmenopausal women. CBCT, particularly the CTMI index in the antegonial region, offers a cost-effective, non-invasive method for early osteoporosis detection, providing a valuable alternative to traditional screening methods.

Although genetic variant effects often interact nonadditively, strategies to uncover epistasis remain in their infancy. Here we develop low-signal signed iterative random forests to elucidate the complex genetic architecture of cardiac hypertrophy, using deep learning-derived left ventricular mass estimates from 29,661 UK Biobank cardiac magnetic resonance images. We report epistatic variants near CCDC141, IGF1R, TTN and TNKS, identifying loci deemed insignificant in genome-wide association studies. Functional genomic and integrative enrichment analyses reveal that genes mapped from these loci share biological process gene ontologies and myogenic regulatory factors. Transcriptomic network analyses using 313 human hearts demonstrate strong co-expression correlations among these genes in healthy hearts, with significantly reduced connectivity in failing hearts. To assess causality, RNA silencing in human induced pluripotent stem cell-derived cardiomyocytes, combined with novel microfluidic single-cell morphology analysis, confirms that cardiomyocyte hypertrophy is nonadditively modifiable by interactions between CCDC141, TTN and IGF1R. Our results expand the scope of cardiac genetic regulation to epistasis.

The pancreas is a gland in the abdomen that helps to produce hormones and digest food. The irregular development of tissues in the pancreas is termed as pancreatic cancer. Identification of pancreatic tumors early is significant for enhancing survival rate and providing appropriate treatment. Thus, an efficient Secretary Wolf Bird Optimization (SeWBO)_Efficient DenseNet is presented for pancreatic tumor detection using Computed Tomography (CT) scans. Firstly, the input pancreatic CT image is accumulated from a database and subjected to image preprocessing using a bilateral filter. After this, lesion is segmented by utilizing Parallel Reverse Attention Network (PraNet), and hyperparameters of PraNet are enhanced by using the proposed SeWBO. The SeWBO is designed by incorporating Wolf Bird Optimization (WBO) and the Secretary Bird Optimization Algorithm (SBOA). Then, features like Complete Local Binary Pattern (CLBP) with Discrete Wavelet Transformation (DWT), statistical features, and Shape Local Binary Texture (SLBT) are extracted. Finally, pancreatic tumor detection is performed by SeWBO_Efficient DenseNet. Here, Efficient DenseNet is developed by combining EfficientNet and DenseNet. Moreover, the proposed SeWBO_Efficient DenseNet achieves better True Negative Rate (TNR), accuracy, and True Positive Rate (TPR), of 93.596%, 94.635%, and 92.579%.

We extend the Hybrid Unet Transformer (HUT) foundation model, which combines the advantages of the CNN and Transformer architectures with a noisy self-supervised approach, and demonstrate it in an ischemic stroke lesion segmentation task. We introduce a self-supervised approach using a noise anchor and show that it can perform better than a supervised approach under a limited amount of annotated data. We supplement our pre-training process with an additional unannotated CT perfusion dataset to validate our approach. Compared to the supervised version, the noisy self-supervised HUT (HUT-NSS) outperforms its counterpart by a margin of 2.4% in terms of dice score. HUT-NSS, on average, gained a further margin of 7.2% dice score and 28.1% Hausdorff Distance score over the state-of-the-art network USSLNet on the CT perfusion scans of the Ischemic Stroke Lesion Segmentation (ISLES2018) dataset. In limited annotated data sets, we show that HUT-NSS gained 7.87% of the dice score over USSLNet when we used 50% of the annotated data sets for training. HUT-NSS gained 7.47% of the dice score over USSLNet when we used 10% of the annotated datasets, and HUT-NSS gained 5.34% of the dice score over USSLNet when we used 1% of the annotated datasets for training. The code is available at https://github.com/vicsohntu/HUTNSS_CT .

To assess the suitability of Transformer-based architectures for medical image segmentation and investigate the potential advantages of Graph Neural Networks (GNNs) in this domain. We analyze the limitations of the Transformer, which models medical images as sequences of image patches, limiting its flexibility in capturing complex and irregular tumor structures. To address it, we propose U-GNN, a pure GNN-based U-shaped architecture designed for medical image segmentation. U-GNN retains the U-Net-inspired inductive bias while leveraging GNNs' topological modeling capabilities. The architecture consists of Vision GNN blocks stacked into a U-shaped structure. Additionally, we introduce the concept of multi-order similarity and propose a zero-computation-cost approach to incorporate higher-order similarity in graph construction. Each Vision GNN block segments the image into patch nodes, constructs multi-order similarity graphs, and aggregates node features via multi-order node information aggregation. Experimental evaluations on multi-organ and cardiac segmentation datasets demonstrate that U-GNN significantly outperforms existing CNN- and Transformer-based models. U-GNN achieves a 6% improvement in Dice Similarity Coefficient (DSC) and an 18% reduction in Hausdorff Distance (HD) compared to state-of-the-art methods. The source code will be released upon paper acceptance.