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Artificial intelligence-assisted diagnosis of early allograft dysfunction based on ultrasound image and data.

Meng Y, Wang M, Niu N, Zhang H, Yang J, Zhang G, Liu J, Tang Y, Wang K

pubmed logopapersMay 12 2025
Early allograft dysfunction (EAD) significantly affects liver transplantation prognosis. This study evaluated the effectiveness of artificial intelligence (AI)-assisted methods in accurately diagnosing EAD and identifying its causes. The primary metric for assessing the accuracy was the area under the receiver operating characteristic curve (AUC). Accuracy, sensitivity, and specificity were calculated and analyzed to compare the performance of the AI models with each other and with radiologists. EAD classification followed the criteria established by Olthoff et al. A total of 582 liver transplant patients who underwent transplantation between December 2012 and June 2021 were selected. Among these, 117 patients (mean age 33.5 ± 26.5 years, 80 men) were evaluated. The ultrasound parameters, images, and clinical information of patients were extracted from the database to train the AI model. The AUC for the ultrasound-spectrogram fusion network constructed from four ultrasound images and medical data was 0.968 (95%CI: 0.940, 0.991), outperforming radiologists by 30% for all metrics. AI assistance significantly improved diagnostic accuracy, sensitivity, and specificity (P < 0.050) for both experienced and less-experienced physicians. EAD lacks efficient diagnosis and causation analysis methods. The integration of AI and ultrasound enhances diagnostic accuracy and causation analysis. By modeling only images and data related to blood flow, the AI model effectively analyzed patients with EAD caused by abnormal blood supply. Our model can assist radiologists in reducing judgment discrepancies, potentially benefitting patients with EAD in underdeveloped regions. Furthermore, it enables targeted treatment for those with abnormal blood supply.

New developments in imaging in ALS.

Kleinerova J, Querin G, Pradat PF, Siah WF, Bede P

pubmed logopapersMay 12 2025
Neuroimaging in ALS has contributed considerable academic insights in recent years demonstrating genotype-specific topological changes decades before phenoconversion and characterising longitudinal propagation patterns in specific phenotypes. It has elucidated the radiological underpinnings of specific clinical phenomena such as pseudobulbar affect, apathy, behavioural change, spasticity, and language deficits. Academic concepts such as sexual dimorphism, motor reserve, cognitive reserve, adaptive changes, connectivity-based propagation, pathological stages, and compensatory mechanisms have also been evaluated by imaging. The underpinnings of extra-motor manifestations such as cerebellar, sensory, extrapyramidal and cognitive symptoms have been studied by purpose-designed imaging protocols. Clustering approaches have been implemented to uncover radiologically distinct disease subtypes and machine-learning models have been piloted to accurately classify individual patients into relevant diagnostic, phenotypic, and prognostic categories. Prediction models have been developed for survival in symptomatic patients and phenoconversion in asymptomatic mutation carriers. A range of novel imaging modalities have been implemented and 7 Tesla MRI platforms are increasingly being used in ALS studies. Non-ALS MND conditions, such as PLS, SBMA, and SMA, are now also being increasingly studied by quantitative neuroimaging approaches. A unifying theme of recent imaging papers is the departure from describing focal brain changes to focusing on dynamic structural and functional connectivity alterations. Progressive cortico-cortical, cortico-basal, cortico-cerebellar, cortico-bulbar, and cortico-spinal disconnection has been consistently demonstrated by recent studies and recognised as the primary driver of clinical decline. These studies have led the reconceptualisation of ALS as a "network" or "circuitry disease".

Deep Learning for Detecting Periapical Bone Rarefaction in Panoramic Radiographs: A Systematic Review and Critical Assessment.

da Silva-Filho JE, da Silva Sousa Z, de-Araújo APC, Fornagero LDS, Machado MP, de Aguiar AWO, Silva CM, de Albuquerque DF, Gurgel-Filho ED

pubmed logopapersMay 12 2025
To evaluate deep learning (DL)-based models for detecting periapical bone rarefaction (PBRs) in panoramic radiographs (PRs), analyzing their feasibility and performance in dental practice. A search was conducted across seven databases and partial grey literature up to November 15, 2024, using Medical Subject Headings and entry terms related to DL, PBRs, and PRs. Studies assessing DL-based models for detecting and classifying PBRs in conventional PRs were included, while those using non-PR imaging or focusing solely on non-PBR lesions were excluded. Two independent reviewers performed screening, data extraction, and quality assessment using the Quality Assessment of Diagnostic Accuracy Studies-2 tool, with conflicts resolved by a third reviewer. Twelve studies met the inclusion criteria, mostly from Asia (58.3%). The risk of bias was moderate in 10 studies (83.3%) and high in 2 (16.7%). DL models showed moderate to high performance in PBR detection (sensitivity: 26-100%; specificity: 51-100%), with U-NET and YOLO being the most used algorithms. Only one study (8.3%) distinguished Periapical Granuloma from Periapical Cysts, revealing a classification gap. Key challenges included limited generalization due to small datasets, anatomical superimpositions in PRs, and variability in reported metrics, compromising models comparison. This review underscores that DL-based has the potential to become a valuable tool in dental image diagnostics, but it cannot yet be considered a definitive practice. Multicenter collaboration is needed to diversify data and democratize those tools. Standardized performance reporting is critical for fair comparability between different models.

Groupwise image registration with edge-based loss for low-SNR cardiac MRI.

Lei X, Schniter P, Chen C, Ahmad R

pubmed logopapersMay 12 2025
The purpose of this study is to perform image registration and averaging of multiple free-breathing single-shot cardiac images, where the individual images may have a low signal-to-noise ratio (SNR). To address low SNR encountered in single-shot imaging, especially at low field strengths, we propose a fast deep learning (DL)-based image registration method, called Averaging Morph with Edge Detection (AiM-ED). AiM-ED jointly registers multiple noisy source images to a noisy target image and utilizes a noise-robust pre-trained edge detector to define the training loss. We validate AiM-ED using synthetic late gadolinium enhanced (LGE) images from the MR extended cardiac-torso (MRXCAT) phantom and free-breathing single-shot LGE images from healthy subjects (24 slices) and patients (5 slices) under various levels of added noise. Additionally, we demonstrate the clinical feasibility of AiM-ED by applying it to data from patients (6 slices) scanned on a 0.55T scanner. Compared with a traditional energy-minimization-based image registration method and DL-based VoxelMorph, images registered using AiM-ED exhibit higher values of recovery SNR and three perceptual image quality metrics. An ablation study shows the benefit of both jointly processing multiple source images and using an edge map in AiM-ED. For single-shot LGE imaging, AiM-ED outperforms existing image registration methods in terms of image quality. With fast inference, minimal training data requirements, and robust performance at various noise levels, AiM-ED has the potential to benefit single-shot CMR applications.

BodyGPS: Anatomical Positioning System

Halid Ziya Yerebakan, Kritika Iyer, Xueqi Guo, Yoshihisa Shinagawa, Gerardo Hermosillo Valadez

arxiv logopreprintMay 12 2025
We introduce a new type of foundational model for parsing human anatomy in medical images that works for different modalities. It supports supervised or unsupervised training and can perform matching, registration, classification, or segmentation with or without user interaction. We achieve this by training a neural network estimator that maps query locations to atlas coordinates via regression. Efficiency is improved by sparsely sampling the input, enabling response times of less than 1 ms without additional accelerator hardware. We demonstrate the utility of the algorithm in both CT and MRI modalities.

Cardiac imaging for the detection of ischemia: current status and future perspectives.

Rodriguez C, Pappas L, Le Hong Q, Baquero L, Nagel E

pubmed logopapersMay 12 2025
Coronary artery disease is the main cause of mortality worldwide mandating early detection, appropriate treatment, and follow-up. Noninvasive cardiac imaging techniques allow detection of obstructive coronary heart disease by direct visualization of the arteries or myocardial blood flow reduction. These techniques have made remarkable progress since their introduction, achieving high diagnostic precision. This review aims at evaluating these noninvasive cardiac imaging techniques, rendering a thorough overview of diagnostic decision-making for detection of ischemia. We discuss the latest advances in the field such as computed tomography angiography, single-photon emission tomography, positron emission tomography, and cardiac magnetic resonance; their main advantages and disadvantages, their most appropriate use and prospects. For the review, we analyzed the literature from 2009 to 2024 on noninvasive cardiac imaging in the diagnosis of coronary artery disease. The review included the 78 publications considered most relevant, including landmark trials, review articles and guidelines. The progress in cardiac imaging is anticipated to overcome various limitations such as high costs, radiation exposure, artifacts, and differences in interpretation among observers. It is expected to lead to more automated scanning processes, and with the assistance of artificial intelligence-driven post-processing software, higher accuracy and reproducibility may be attained.

ABS-Mamba: SAM2-Driven Bidirectional Spiral Mamba Network for Medical Image Translation

Feng Yuan, Yifan Gao, Wenbin Wu, Keqing Wu, Xiaotong Guo, Jie Jiang, Xin Gao

arxiv logopreprintMay 12 2025
Accurate multi-modal medical image translation requires ha-rmonizing global anatomical semantics and local structural fidelity, a challenge complicated by intermodality information loss and structural distortion. We propose ABS-Mamba, a novel architecture integrating the Segment Anything Model 2 (SAM2) for organ-aware semantic representation, specialized convolutional neural networks (CNNs) for preserving modality-specific edge and texture details, and Mamba's selective state-space modeling for efficient long- and short-range feature dependencies. Structurally, our dual-resolution framework leverages SAM2's image encoder to capture organ-scale semantics from high-resolution inputs, while a parallel CNNs branch extracts fine-grained local features. The Robust Feature Fusion Network (RFFN) integrates these epresentations, and the Bidirectional Mamba Residual Network (BMRN) models spatial dependencies using spiral scanning and bidirectional state-space dynamics. A three-stage skip fusion decoder enhances edge and texture fidelity. We employ Efficient Low-Rank Adaptation (LoRA+) fine-tuning to enable precise domain specialization while maintaining the foundational capabilities of the pre-trained components. Extensive experimental validation on the SynthRAD2023 and BraTS2019 datasets demonstrates that ABS-Mamba outperforms state-of-the-art methods, delivering high-fidelity cross-modal synthesis that preserves anatomical semantics and structural details to enhance diagnostic accuracy in clinical applications. The code is available at https://github.com/gatina-yone/ABS-Mamba

Multi-Plane Vision Transformer for Hemorrhage Classification Using Axial and Sagittal MRI Data

Badhan Kumar Das, Gengyan Zhao, Boris Mailhe, Thomas J. Re, Dorin Comaniciu, Eli Gibson, Andreas Maier

arxiv logopreprintMay 12 2025
Identifying brain hemorrhages from magnetic resonance imaging (MRI) is a critical task for healthcare professionals. The diverse nature of MRI acquisitions with varying contrasts and orientation introduce complexity in identifying hemorrhage using neural networks. For acquisitions with varying orientations, traditional methods often involve resampling images to a fixed plane, which can lead to information loss. To address this, we propose a 3D multi-plane vision transformer (MP-ViT) for hemorrhage classification with varying orientation data. It employs two separate transformer encoders for axial and sagittal contrasts, using cross-attention to integrate information across orientations. MP-ViT also includes a modality indication vector to provide missing contrast information to the model. The effectiveness of the proposed model is demonstrated with extensive experiments on real world clinical dataset consists of 10,084 training, 1,289 validation and 1,496 test subjects. MP-ViT achieved substantial improvement in area under the curve (AUC), outperforming the vision transformer (ViT) by 5.5% and CNN-based architectures by 1.8%. These results highlight the potential of MP-ViT in improving performance for hemorrhage detection when different orientation contrasts are needed.

Inference-specific learning for improved medical image segmentation.

Chen Y, Liu S, Li M, Han B, Xing L

pubmed logopapersMay 12 2025
Deep learning networks map input data to output predictions by fitting network parameters using training data. However, applying a trained network to new, unseen inference data resembles an interpolation process, which may lead to inaccurate predictions if the training and inference data distributions differ significantly. This study aims to generally improve the prediction accuracy of deep learning networks on the inference case by bridging the gap between training and inference data. We propose an inference-specific learning strategy to enhance the network learning process without modifying the network structure. By aligning training data to closely match the specific inference data, we generate an inference-specific training dataset, enhancing the network optimization around the inference data point for more accurate predictions. Taking medical image auto-segmentation as an example, we develop an inference-specific auto-segmentation framework consisting of initial segmentation learning, inference-specific training data deformation, and inference-specific segmentation refinement. The framework is evaluated on public abdominal, head-neck, and pancreas CT datasets comprising 30, 42, and 210 cases, respectively, for medical image segmentation. Experimental results show that our method improves the organ-averaged mean Dice by 6.2% (p-value = 0.001), 1.5% (p-value = 0.003), and 3.7% (p-value < 0.001) on the three datasets, respectively, with a more notable increase for difficult-to-segment organs (such as a 21.7% increase for the gallbladder [p-value = 0.004]). By incorporating organ mask-based weak supervision into the training data alignment learning, the inference-specific auto-segmentation accuracy is generally improved compared with the image intensity-based alignment. Besides, a moving-averaged calculation of the inference organ mask during the learning process strengthens both the robustness and accuracy of the final inference segmentation. By leveraging inference data during training, the proposed inference-specific learning strategy consistently improves auto-segmentation accuracy and holds the potential to be broadly applied for enhanced deep learning decision-making.

Generation of synthetic CT from MRI for MRI-based attenuation correction of brain PET images using radiomics and machine learning.

Hoseinipourasl A, Hossein-Zadeh GA, Sheikhzadeh P, Arabalibeik H, Alavijeh SK, Zaidi H, Ay MR

pubmed logopapersMay 12 2025
Accurate quantitative PET imaging in neurological studies requires proper attenuation correction. MRI-guided attenuation correction in PET/MRI remains challenging owing to the lack of direct relationship between MRI intensities and linear attenuation coefficients. This study aims at generating accurate patient-specific synthetic CT volumes, attenuation maps, and attenuation correction factor (ACF) sinograms with continuous values utilizing a combination of machine learning algorithms, image processing techniques, and voxel-based radiomics feature extraction approaches. Brain MR images of ten healthy volunteers were acquired using IR-pointwise encoding time reduction with radial acquisition (IR-PETRA) and VIBE-Dixon techniques. synthetic CT (SCT) images, attenuation maps, and attenuation correction factors (ACFs) were generated using the LightGBM, a fast and accurate machine learning algorithm, from the radiomics-based and image processing-based feature maps of MR images. Additionally, ultra-low-dose CT images of the same volunteers were acquired and served as the standard of reference for evaluation. The SCT images, attenuation maps, and ACF sinograms were assessed using qualitative and quantitative evaluation metrics and compared against their corresponding reference images, attenuation maps, and ACF sinograms. The voxel-wise and volume-wise comparison between synthetic and reference CT images yielded an average mean absolute error of 60.75 ± 8.8 HUs, an average structural similarity index of 0.88 ± 0.02, and an average peak signal-to-noise ratio of 32.83 ± 2.74 dB. Additionally, we compared MRI-based attenuation maps and ACF sinograms with their CT-based counterparts, revealing average normalized mean absolute errors of 1.48% and 1.33%, respectively. Quantitative assessments indicated higher correlations and similarities between LightGBM-synthesized CT and Reference CT images. Moreover, the cross-validation results showed the possibility of producing accurate SCT images, MRI-based attenuation maps, and ACF sinograms. This might spur the implementation of MRI-based attenuation correction on PET/MRI and dedicated brain PET scanners with lower computational time using CPU-based processors.
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