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An Explainable Deep Learning Framework for Brain Stroke and Tumor Progression via MRI Interpretation

Rajan Das Gupta, Md Imrul Hasan Showmick, Mushfiqur Rahman Abir, Shanjida Akter, Md. Yeasin Rahat, Md. Jakir Hossen

arxiv logopreprintJun 10 2025
Early and accurate detection of brain abnormalities, such as tumors and strokes, is essential for timely intervention and improved patient outcomes. In this study, we present a deep learning-based system capable of identifying both brain tumors and strokes from MRI images, along with their respective stages. We have executed two groundbreaking strategies involving convolutional neural networks, MobileNet V2 and ResNet-50-optimized through transfer learning to classify MRI scans into five diagnostic categories. Our dataset, aggregated and augmented from various publicly available MRI sources, was carefully curated to ensure class balance and image diversity. To enhance model generalization and prevent overfitting, we applied dropout layers and extensive data augmentation. The models achieved strong performance, with training accuracy reaching 93\% and validation accuracy up to 88\%. While ResNet-50 demonstrated slightly better results, Mobile Net V2 remains a promising option for real-time diagnosis in low resource settings due to its lightweight architecture. This research offers a practical AI-driven solution for early brain abnormality detection, with potential for clinical deployment and future enhancement through larger datasets and multi modal inputs.

Adapting Vision-Language Foundation Model for Next Generation Medical Ultrasound Image Analysis

Jingguo Qu, Xinyang Han, Tonghuan Xiao, Jia Ai, Juan Wu, Tong Zhao, Jing Qin, Ann Dorothy King, Winnie Chiu-Wing Chu, Jing Cai, Michael Tin-Cheung Ying

arxiv logopreprintJun 10 2025
Medical ultrasonography is an essential imaging technique for examining superficial organs and tissues, including lymph nodes, breast, and thyroid. It employs high-frequency ultrasound waves to generate detailed images of the internal structures of the human body. However, manually contouring regions of interest in these images is a labor-intensive task that demands expertise and often results in inconsistent interpretations among individuals. Vision-language foundation models, which have excelled in various computer vision applications, present new opportunities for enhancing ultrasound image analysis. Yet, their performance is hindered by the significant differences between natural and medical imaging domains. This research seeks to overcome these challenges by developing domain adaptation methods for vision-language foundation models. In this study, we explore the fine-tuning pipeline for vision-language foundation models by utilizing large language model as text refiner with special-designed adaptation strategies and task-driven heads. Our approach has been extensively evaluated on six ultrasound datasets and two tasks: segmentation and classification. The experimental results show that our method can effectively improve the performance of vision-language foundation models for ultrasound image analysis, and outperform the existing state-of-the-art vision-language and pure foundation models. The source code of this study is available at https://github.com/jinggqu/NextGen-UIA.

Geometric deep learning for local growth prediction on abdominal aortic aneurysm surfaces

Dieuwertje Alblas, Patryk Rygiel, Julian Suk, Kaj O. Kappe, Marieke Hofman, Christoph Brune, Kak Khee Yeung, Jelmer M. Wolterink

arxiv logopreprintJun 10 2025
Abdominal aortic aneurysms (AAAs) are progressive focal dilatations of the abdominal aorta. AAAs may rupture, with a survival rate of only 20\%. Current clinical guidelines recommend elective surgical repair when the maximum AAA diameter exceeds 55 mm in men or 50 mm in women. Patients that do not meet these criteria are periodically monitored, with surveillance intervals based on the maximum AAA diameter. However, this diameter does not take into account the complex relation between the 3D AAA shape and its growth, making standardized intervals potentially unfit. Personalized AAA growth predictions could improve monitoring strategies. We propose to use an SE(3)-symmetric transformer model to predict AAA growth directly on the vascular model surface enriched with local, multi-physical features. In contrast to other works which have parameterized the AAA shape, this representation preserves the vascular surface's anatomical structure and geometric fidelity. We train our model using a longitudinal dataset of 113 computed tomography angiography (CTA) scans of 24 AAA patients at irregularly sampled intervals. After training, our model predicts AAA growth to the next scan moment with a median diameter error of 1.18 mm. We further demonstrate our model's utility to identify whether a patient will become eligible for elective repair within two years (acc = 0.93). Finally, we evaluate our model's generalization on an external validation set consisting of 25 CTAs from 7 AAA patients from a different hospital. Our results show that local directional AAA growth prediction from the vascular surface is feasible and may contribute to personalized surveillance strategies.

Foundation Models in Medical Imaging -- A Review and Outlook

Vivien van Veldhuizen, Vanessa Botha, Chunyao Lu, Melis Erdal Cesur, Kevin Groot Lipman, Edwin D. de Jong, Hugo Horlings, Clárisa Sanchez, Cees Snoek, Ritse Mann, Eric Marcus, Jonas Teuwen

arxiv logopreprintJun 10 2025
Foundation models (FMs) are changing the way medical images are analyzed by learning from large collections of unlabeled data. Instead of relying on manually annotated examples, FMs are pre-trained to learn general-purpose visual features that can later be adapted to specific clinical tasks with little additional supervision. In this review, we examine how FMs are being developed and applied in pathology, radiology, and ophthalmology, drawing on evidence from over 150 studies. We explain the core components of FM pipelines, including model architectures, self-supervised learning methods, and strategies for downstream adaptation. We also review how FMs are being used in each imaging domain and compare design choices across applications. Finally, we discuss key challenges and open questions to guide future research.

MedMoE: Modality-Specialized Mixture of Experts for Medical Vision-Language Understanding

Shivang Chopra, Gabriela Sanchez-Rodriguez, Lingchao Mao, Andrew J Feola, Jing Li, Zsolt Kira

arxiv logopreprintJun 10 2025
Different medical imaging modalities capture diagnostic information at varying spatial resolutions, from coarse global patterns to fine-grained localized structures. However, most existing vision-language frameworks in the medical domain apply a uniform strategy for local feature extraction, overlooking the modality-specific demands. In this work, we present MedMoE, a modular and extensible vision-language processing framework that dynamically adapts visual representation based on the diagnostic context. MedMoE incorporates a Mixture-of-Experts (MoE) module conditioned on the report type, which routes multi-scale image features through specialized expert branches trained to capture modality-specific visual semantics. These experts operate over feature pyramids derived from a Swin Transformer backbone, enabling spatially adaptive attention to clinically relevant regions. This framework produces localized visual representations aligned with textual descriptions, without requiring modality-specific supervision at inference. Empirical results on diverse medical benchmarks demonstrate that MedMoE improves alignment and retrieval performance across imaging modalities, underscoring the value of modality-specialized visual representations in clinical vision-language systems.

Challenges and Advances in Classifying Brain Tumors: An Overview of Machine, Deep Learning, and Hybrid Approaches with Future Perspectives in Medical Imaging.

Alshomrani F

pubmed logopapersJun 10 2025
Accurate brain tumor classification is essential in neuro-oncology, as it directly informs treatment strategies and influences patient outcomes. This review comprehensively explores machine learning (ML) and deep learning (DL) models that enhance the accuracy and efficiency of brain tumor classification using medical imaging data, particularly Magnetic Resonance Imaging (MRI). As a noninvasive imaging technique, MRI plays a central role in detecting, segmenting, and characterizing brain tumors by providing detailed anatomical views that help distinguish various tumor types, including gliomas, meningiomas, and metastatic brain lesions. The review presents a detailed analysis of diverse ML approaches, from classical algorithms such as Support Vector Machines (SVM) and Decision Trees to advanced DL models, including Convolutional Neural Networks (CNN), Recurrent Neural Networks (RNN), and hybrid architectures that combine multiple techniques for improved performance. Through comparative analysis of recent studies across various datasets, the review evaluates these methods using metrics such as accuracy, sensitivity, specificity, and AUC-ROC, offering insights into their effectiveness and limitations. Significant challenges in the field are examined, including the scarcity of annotated datasets, computational complexity requirements, model interpretability issues, and barriers to clinical integration. The review proposes future directions to address these challenges, highlighting the potential of multi-modal imaging that combines MRI with other imaging modalities, explainable AI frameworks for enhanced model transparency, and privacy-preserving techniques for securing sensitive patient data. This comprehensive analysis demonstrates the transformative potential of ML and DL in advancing brain tumor diagnosis while emphasizing the necessity for continued research and innovation to overcome current limitations and ensure successful clinical implementation for improved patient care.

DWI-based Biologically Interpretable Radiomic Nomogram for Predicting 1- year Biochemical Recurrence after Radical Prostatectomy: A Deep Learning, Multicenter Study.

Niu X, Li Y, Wang L, Xu G

pubmed logopapersJun 10 2025
It is not rare to experience a biochemical recurrence (BCR) following radical prostatectomy (RP) for prostate cancer (PCa). It has been reported that early detection and management of BCR following surgery could improve survival in PCa. This study aimed to develop a nomogram integrating deep learning-based radiomic features and clinical parameters to predict 1-year BCR after RP and to examine the associations between radiomic scores and the tumor microenvironment (TME). In this retrospective multicenter study, two independent cohorts of patients (n = 349) who underwent RP after multiparametric magnetic resonance imaging (mpMRI) between January 2015 and January 2022 were included in the analysis. Single-cell RNA sequencing data from four prospectively enrolled participants were used to investigate the radiomic score-related TME. The 3D U-Net was trained and optimized for prostate cancer segmentation using diffusion-weighted imaging, and radiomic features of the target lesion were extracted. Predictive nomograms were developed via multivariate Cox proportional hazard regression analysis. The nomograms were assessed for discrimination, calibration, and clinical usefulness. In the development cohort, the clinical-radiomic nomogram had an AUC of 0.892 (95% confidence interval: 0.783--0.939), which was considerably greater than those of the radiomic signature and clinical model. The Hosmer-Lemeshow test demonstrated that the clinical-radiomic model performed well in both the development (P = 0.461) and validation (P = 0.722) cohorts. Decision curve analysis revealed that the clinical-radiomic nomogram displayed better clinical predictive usefulness than the clinical or radiomic signature alone in both cohorts. Radiomic scores were associated with a significant difference in the TME pattern. Our study demonstrated the feasibility of a DWI-based clinical-radiomic nomogram combined with deep learning for the prediction of 1-year BCR. The findings revealed that the radiomic score was associated with a distinctive tumor microenvironment.

RadGPT: A system based on a large language model that generates sets of patient-centered materials to explain radiology report information.

Herwald SE, Shah P, Johnston A, Olsen C, Delbrouck JB, Langlotz CP

pubmed logopapersJun 10 2025
The Cures Act Final Rule requires that patients have real-time access to their radiology reports, which contain technical language. Our objective to was to use a novel system called RadGPT, which integrates concept extraction and a large language model (LLM), to help patients understand their radiology reports. RadGPT generated 150 concept explanations and 390 question-and-answer pairs from 30 radiology report impressions from between 2012 and 2020. The extracted concepts were used to create concept-based explanations, as well as concept-based question-and-answer pairs where questions were generated using either a fixed template or an LLM. Additionally, report-based question-and-answer pairs were generated directly from the impression using an LLM without concept extraction. One board-certified radiologist and 4 radiology residents rated the material quality using a standardized rubric. Concept-based LLM-generated questions were significantly higher quality than concept-based template-generated questions (p < 0.001). Excluding those template-based question-and-answer pairs from further analysis, nearly all (> 95%) of RadGPT-generated materials were rated highly, with at least 50% receiving the highest possible ranking from all 5 raters. No answers or explanations were rated as likely to affect the safety or effectiveness of patient care. Report-level LLM-based questions and answers were rated particularly highly, with 92% of report-level LLM-based questions and 61% of the corresponding report-level answers receiving the highest rating from all raters. The educational tool RadGPT generated high-quality explanations and question-and-answer pairs that were personalized for each radiology report, unlikely to produce harmful explanations and likely to enhance patient understanding of radiology information.

Foundation Models in Medical Imaging -- A Review and Outlook

Vivien van Veldhuizen, Vanessa Botha, Chunyao Lu, Melis Erdal Cesur, Kevin Groot Lipman, Edwin D. de Jong, Hugo Horlings, Clárisa I. Sanchez, Cees G. M. Snoek, Lodewyk Wessels, Ritse Mann, Eric Marcus, Jonas Teuwen

arxiv logopreprintJun 10 2025
Foundation models (FMs) are changing the way medical images are analyzed by learning from large collections of unlabeled data. Instead of relying on manually annotated examples, FMs are pre-trained to learn general-purpose visual features that can later be adapted to specific clinical tasks with little additional supervision. In this review, we examine how FMs are being developed and applied in pathology, radiology, and ophthalmology, drawing on evidence from over 150 studies. We explain the core components of FM pipelines, including model architectures, self-supervised learning methods, and strategies for downstream adaptation. We also review how FMs are being used in each imaging domain and compare design choices across applications. Finally, we discuss key challenges and open questions to guide future research.

Foundation Models in Medical Imaging -- A Review and Outlook

Vivien van Veldhuizen, Vanessa Botha, Chunyao Lu, Melis Erdal Cesur, Kevin Groot Lipman, Edwin D. de Jong, Hugo Horlings, Clárisa I. Sanchez, Cees G. M. Snoek, Lodewyk Wessels, Ritse Mann, Eric Marcus, Jonas Teuwen

arxiv logopreprintJun 10 2025
Foundation models (FMs) are changing the way medical images are analyzed by learning from large collections of unlabeled data. Instead of relying on manually annotated examples, FMs are pre-trained to learn general-purpose visual features that can later be adapted to specific clinical tasks with little additional supervision. In this review, we examine how FMs are being developed and applied in pathology, radiology, and ophthalmology, drawing on evidence from over 150 studies. We explain the core components of FM pipelines, including model architectures, self-supervised learning methods, and strategies for downstream adaptation. We also review how FMs are being used in each imaging domain and compare design choices across applications. Finally, we discuss key challenges and open questions to guide future research.
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