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Automated contouring for breast cancer radiotherapy in the isocentric lateral decubitus position: a neural network-based solution for enhanced precision and efficiency.

Loap P, Monteil R, Kirova Y, Vu-Bezin J

pubmed logopapersJun 1 2025
Adjuvant radiotherapy is essential for reducing local recurrence and improving survival in breast cancer patients, but it carries a risk of ischemic cardiac toxicity, which increases with heart exposure. The isocentric lateral decubitus position, where the breast rests flat on a support, reduces heart exposure and leads to delivery of a more uniform dose. This position is particularly beneficial for patients with unique anatomies, such as those with pectus excavatum or larger breast sizes. While artificial intelligence (AI) algorithms for autocontouring have shown promise, they have not been tailored to this specific position. This study aimed to develop and evaluate a neural network-based autocontouring algorithm for patients treated in the isocentric lateral decubitus position. In this single-center study, 1189 breast cancer patients treated after breast-conserving surgery were included. Their simulation CT scans (1209 scans) were used to train and validate a neural network-based autocontouring algorithm (nnU-Net). Of these, 1087 scans were used for training, and 122 scans were reserved for validation. The algorithm's performance was assessed using the Dice similarity coefficient (DSC) to compare the automatically delineated volumes with manual contours. A clinical evaluation of the algorithm was performed on 30 additional patients, with contours rated by two expert radiation oncologists. The neural network-based algorithm achieved a segmentation time of approximately 4 min, compared to 20 min for manual segmentation. The DSC values for the validation cohort were 0.88 for the treated breast, 0.90 for the heart, 0.98 for the right lung, and 0.97 for the left lung. In the clinical evaluation, 90% of the automatically contoured breast volumes were rated as acceptable without corrections, while the remaining 10% required minor adjustments. All lung contours were accepted without corrections, and heart contours were rated as acceptable in 93.3% of cases, with minor corrections needed in 6.6% of cases. This neural network-based autocontouring algorithm offers a practical, time-saving solution for breast cancer radiotherapy planning in the isocentric lateral decubitus position. Its strong geometric performance, clinical acceptability, and significant time efficiency make it a valuable tool for modern radiotherapy practices, particularly in high-volume centers.

A continuous-action deep reinforcement learning-based agent for coronary artery centerline extraction in coronary CT angiography images.

Zhang Y, Luo G, Wang W, Cao S, Dong S, Yu D, Wang X, Wang K

pubmed logopapersJun 1 2025
The lumen centerline of the coronary artery allows vessel reconstruction used to detect stenoses and plaques. Discrete-action-based centerline extraction methods suffer from artifacts and plaques. This study aimed to develop a continuous-action-based method which performs more effectively in cases involving artifacts or plaques. A continuous-action deep reinforcement learning-based model was trained to predict the artery's direction and radius value. The model is based on an Actor-Critic architecture. The Actor learns a deterministic policy to output the actions made by an agent. These actions indicate the centerline's direction and radius value consecutively. The Critic learns a value function to evaluate the quality of the agent's actions. A novel DDR reward was introduced to measure the agent's action (both centerline extraction and radius estimate) at each step. The method achieved an average OV of 95.7%, OF of 93.6%, OT of 97.3%, and AI of 0.22 mm in 80 test data. In 53 cases with artifacts or plaques, it achieved an average OV of 95.0%, OF of 91.5%, OT of 96.7%, and AI of 0.23 mm. The 95% limits of agreement between the reference and estimated radius values were <math xmlns="http://www.w3.org/1998/Math/MathML"><mo>-</mo></math> 0.46 mm and 0.43 mm in the 80 test data. Experiments demonstrate that the Actor-Critic architecture can achieve efficient centerline extraction and radius estimate. Compared with discrete-action-based methods, our method performs more effectively in cases involving artifacts or plaques. The extracted centerlines and radius values allow accurate coronary artery reconstruction that facilitates the detection of stenoses and plaques.

PEDRA-EFB0: colorectal cancer prognostication using deep learning with patch embeddings and dual residual attention.

Zhao Z, Wang H, Wu D, Zhu Q, Tan X, Hu S, Ge Y

pubmed logopapersJun 1 2025
In computer-aided diagnosis systems, precise feature extraction from CT scans of colorectal cancer using deep learning is essential for effective prognosis. However, existing convolutional neural networks struggle to capture long-range dependencies and contextual information, resulting in incomplete CT feature extraction. To address this, the PEDRA-EFB0 architecture integrates patch embeddings and a dual residual attention mechanism for enhanced feature extraction and survival prediction in colorectal cancer CT scans. A patch embedding method processes CT scans into patches, creating positional features for global representation and guiding spatial attention computation. Additionally, a dual residual attention mechanism during the upsampling stage selectively combines local and global features, enhancing CT data utilization. Furthermore, this paper proposes a feature selection algorithm that combines autoencoders and entropy technology, encoding and compressing high-dimensional data to reduce redundant information and using entropy to assess the importance of features, thereby achieving precise feature selection. Experimental results indicate the PEDRA-EFB0 model outperforms traditional methods on colorectal cancer CT metrics, notably in C-index, BS, MCC, and AUC, enhancing survival prediction accuracy. Our code is freely available at https://github.com/smile0208z/PEDRA .

Deep learning radiomics analysis for prediction of survival in patients with unresectable gastric cancer receiving immunotherapy.

Gou M, Zhang H, Qian N, Zhang Y, Sun Z, Li G, Wang Z, Dai G

pubmed logopapersJun 1 2025
Immunotherapy has become an option for the first-line therapy of advanced gastric cancer (GC), with improved survival. Our study aimed to investigate unresectable GC from an imaging perspective combined with clinicopathological variables to identify patients who were most likely to benefit from immunotherapy. Patients with unresectable GC who were consecutively treated with immunotherapy at two different medical centers of Chinese PLA General Hospital were included and divided into the training and validation cohorts, respectively. A deep learning neural network, using a multimodal ensemble approach based on CT imaging data before immunotherapy, was trained in the training cohort to predict survival, and an internal validation cohort was constructed to select the optimal ensemble model. Data from another cohort were used for external validation. The area under the receiver operating characteristic curve was analyzed to evaluate performance in predicting survival. Detailed clinicopathological data and peripheral blood prior to immunotherapy were collected for each patient. Univariate and multivariable logistic regression analysis of imaging models and clinicopathological variables was also applied to identify the independent predictors of survival. A nomogram based on multivariable logistic regression was constructed. A total of 79 GC patients in the training cohort and 97 patients in the external validation cohort were enrolled in this study. A multi-model ensemble approach was applied to train a model to predict the 1-year survival of GC patients. Compared to individual models, the ensemble model showed improvement in performance metrics in both the internal and external validation cohorts. There was a significant difference in overall survival (OS) among patients with different imaging models based on the optimum cutoff score of 0.5 (HR = 0.20, 95 % CI: 0.10-0.37, <i>P</i> < 0.001). Multivariate Cox regression analysis revealed that the imaging models, PD-L1 expression, and lung immune prognostic index were independent prognostic factors for OS. We combined these variables and built a nomogram. The calibration curves showed that the C-index of the nomogram was 0.85 and 0.78 in the training and validation cohorts. The deep learning model in combination with several clinical factors showed predictive value for survival in patients with unresectable GC receiving immunotherapy.

Deep Learning-Based Three-Dimensional Analysis Reveals Distinct Patterns of Condylar Remodelling After Orthognathic Surgery in Skeletal Class III Patients.

Barone S, Cevidanes L, Bianchi J, Goncalves JR, Giudice A

pubmed logopapersJun 1 2025
This retrospective study aimed to evaluate morphometric changes in mandibular condyles of patients with skeletal Class III malocclusion following two-jaw orthognathic surgery planned using virtual surgical planning (VSP) and analysed with automated three-dimensional (3D) image analysis based on deep-learning techniques. Pre-operative (T1) and 12-18 months post-operative (T2) Cone-Beam Computed Tomography (CBCT) scans of 17 patients (mean age: 24.8 ± 3.5 years) were analysed using 3DSlicer software. Deep-learning algorithms automated CBCT orientation, registration, bone segmentation, and landmark identification. By utilising voxel-based superimposition of pre- and post-operative CBCT scans and shape correspondence, the overall changes in condylar morphology were assessed, with a focus on bone resorption and apposition at specific regions (superior, lateral and medial poles). The correlation between these modifications and the extent of actual condylar movements post-surgery was investigated. Statistical analysis was conducted with a significance level of α = 0.05. Overall condylar remodelling was minimal, with mean changes of < 1 mm. Small but statistically significant bone resorption occurred at the condylar superior articular surface, while bone apposition was primarily observed at the lateral pole. The bone apposition at the lateral pole and resorption at the superior articular surface were significantly correlated with medial condylar displacement (p < 0.05). The automated 3D analysis revealed distinct patterns of condylar remodelling following orthognathic surgery in skeletal Class III patients, with minimal overall changes but significant regional variations. The correlation between condylar displacements and remodelling patterns highlights the need for precise pre-operative planning to optimise condylar positioning, potentially minimising harmful remodelling and enhancing stability.

Phenotyping atherosclerotic plaque and perivascular adipose tissue: signalling pathways and clinical biomarkers in atherosclerosis.

Grodecki K, Geers J, Kwiecinski J, Lin A, Slipczuk L, Slomka PJ, Dweck MR, Nerlekar N, Williams MC, Berman D, Marwick T, Newby DE, Dey D

pubmed logopapersJun 1 2025
Computed tomography coronary angiography provides a non-invasive evaluation of coronary artery disease that includes phenotyping of atherosclerotic plaques and the surrounding perivascular adipose tissue (PVAT). Image analysis techniques have been developed to quantify atherosclerotic plaque burden and morphology as well as the associated PVAT attenuation, and emerging radiomic approaches can add further contextual information. PVAT attenuation might provide a novel measure of vascular health that could be indicative of the pathogenetic processes implicated in atherosclerosis such as inflammation, fibrosis or increased vascularity. Bidirectional signalling between the coronary artery and adjacent PVAT has been hypothesized to contribute to coronary artery disease progression and provide a potential novel measure of the risk of future cardiovascular events. However, despite the development of more advanced radiomic and artificial intelligence-based algorithms, studies involving large datasets suggest that the measurement of PVAT attenuation contributes only modest additional predictive discrimination to standard cardiovascular risk scores. In this Review, we explore the pathobiology of coronary atherosclerotic plaques and PVAT, describe their phenotyping with computed tomography coronary angiography, and discuss potential future applications in clinical risk prediction and patient management.

Automated Cone Beam Computed Tomography Segmentation of Multiple Impacted Teeth With or Without Association to Rare Diseases: Evaluation of Four Deep Learning-Based Methods.

Sinard E, Gajny L, de La Dure-Molla M, Felizardo R, Dot G

pubmed logopapersJun 1 2025
To assess the accuracy of three commercially available and one open-source deep learning (DL) solutions for automatic tooth segmentation in cone beam computed tomography (CBCT) images of patients with multiple dental impactions. Twenty patients (20 CBCT scans) were selected from a retrospective cohort of individuals with multiple dental impactions. For each CBCT scan, one reference segmentation and four DL segmentations of the maxillary and mandibular teeth were obtained. Reference segmentations were generated by experts using a semi-automatic process. DL segmentations were automatically generated according to the manufacturer's instructions. Quantitative and qualitative evaluations of each DL segmentation were performed by comparing it with expert-generated segmentation. The quantitative metrics used were Dice similarity coefficient (DSC) and the normalized surface distance (NSD). The patients had an average of 12 retained teeth, with 12 of them diagnosed with a rare disease. DSC values ranged from 88.5% ± 3.2% to 95.6% ± 1.2%, and NSD values ranged from 95.3% ± 2.7% to 97.4% ± 6.5%. The number of completely unsegmented teeth ranged from 1 (0.1%) to 41 (6.0%). Two solutions (Diagnocat and DentalSegmentator) outperformed the others across all tested parameters. All the tested methods showed a mean NSD of approximately 95%, proving their overall efficiency for tooth segmentation. The accuracy of the methods varied among the four tested solutions owing to the presence of impacted teeth in our CBCT scans. DL solutions are evolving rapidly, and their future performance cannot be predicted based on our results.

AI model using CT-based imaging biomarkers to predict hepatocellular carcinoma in patients with chronic hepatitis B.

Shin H, Hur MH, Song BG, Park SY, Kim GA, Choi G, Nam JY, Kim MA, Park Y, Ko Y, Park J, Lee HA, Chung SW, Choi NR, Park MK, Lee YB, Sinn DH, Kim SU, Kim HY, Kim JM, Park SJ, Lee HC, Lee DH, Chung JW, Kim YJ, Yoon JH, Lee JH

pubmed logopapersJun 1 2025
Various hepatocellular carcinoma (HCC) prediction models have been proposed for patients with chronic hepatitis B (CHB) using clinical variables. We aimed to develop an artificial intelligence (AI)-based HCC prediction model by incorporating imaging biomarkers derived from abdominal computed tomography (CT) images along with clinical variables. An AI prediction model employing a gradient-boosting machine algorithm was developed utilizing imaging biomarkers extracted by DeepFore, a deep learning-based CT auto-segmentation software. The derivation cohort (n = 5,585) was randomly divided into the training and internal validation sets at a 3:1 ratio. The external validation cohort included 2,883 patients. Six imaging biomarkers (i.e. abdominal visceral fat-total fat volume ratio, total fat-trunk volume ratio, spleen volume, liver volume, liver-spleen Hounsfield unit ratio, and muscle Hounsfield unit) and eight clinical variables were selected as the main variables of our model, PLAN-B-DF. In the internal validation set (median follow-up duration = 7.4 years), PLAN-B-DF demonstrated an excellent predictive performance with a c-index of 0.91 and good calibration function (p = 0.78 by the Hosmer-Lemeshow test). In the external validation cohort (median follow-up duration = 4.6 years), PLAN-B-DF showed a significantly better discrimination function compared to previous models, including PLAN-B, PAGE-B, modified PAGE-B, and CU-HCC (c-index, 0.89 vs. 0.65-0.78; all p <0.001), and maintained a good calibration function (p = 0.42 by the Hosmer-Lemeshow test). When patients were classified into four groups according to the risk probability calculated by PLAN-B-DF, the 10-year cumulative HCC incidence was 0.0%, 0.4%, 16.0%, and 46.2% in the minimal-, low-, intermediate-, and high-risk groups, respectively. This AI prediction model, integrating deep learning-based auto-segmentation of CT images, offers improved performance in predicting HCC risk among patients with CHB compared to previous models. The novel predictive model PLAN-B-DF, employing an automated computed tomography segmentation algorithm, significantly improves predictive accuracy and risk stratification for hepatocellular carcinoma in patients with chronic hepatitis B (CHB). Using a gradient-boosting algorithm and computed tomography metrics, such as visceral fat volume and myosteatosis, PLAN-B-DF outperforms previous models based solely on clinical and demographic data. This model not only shows a higher c-index compared to previous models, but also effectively classifies patients with CHB into different risk groups. This model uses machine learning to analyze the complex relationships among various risk factors contributing to hepatocellular carcinoma occurrence, thereby enabling more personalized surveillance for patients with CHB.

Dual Energy CT for Deep Learning-Based Segmentation and Volumetric Estimation of Early Ischemic Infarcts.

Kamel P, Khalid M, Steger R, Kanhere A, Kulkarni P, Parekh V, Yi PH, Gandhi D, Bodanapally U

pubmed logopapersJun 1 2025
Ischemic changes are not visible on non-contrast head CT until several hours after infarction, though deep convolutional neural networks have shown promise in the detection of subtle imaging findings. This study aims to assess if dual-energy CT (DECT) acquisition can improve early infarct visibility for machine learning. The retrospective dataset consisted of 330 DECTs acquired up to 48 h prior to confirmation of a DWI positive infarct on MRI between 2016 and 2022. Infarct segmentation maps were generated from the MRI and co-registered to the CT to serve as ground truth for segmentation. A self-configuring 3D nnU-Net was trained for segmentation on (1) standard 120 kV mixed-images (2) 190 keV virtual monochromatic images and (3) 120 kV + 190 keV images as dual channel inputs. Algorithm performance was assessed with Dice scores with paired t-tests on a test set. Global aggregate Dice scores were 0.616, 0.645, and 0.665 for standard 120 kV images, 190 keV, and combined channel inputs respectively. Differences in overall Dice scores were statistically significant with highest performance for combined channel inputs (p < 0.01). Small but statistically significant differences were observed for infarcts between 6 and 12 h from last-known-well with higher performance for larger infarcts. Volumetric accuracy trended higher with combined inputs but differences were not statistically significant (p = 0.07). Supplementation of standard head CT images with dual-energy data provides earlier and more accurate segmentation of infarcts for machine learning particularly between 6 and 12 h after last-known-well.

Radiomics-driven spectral profiling of six kidney stone types with monoenergetic CT reconstructions in photon-counting CT.

Hertel A, Froelich MF, Overhoff D, Nestler T, Faby S, Jürgens M, Schmidt B, Vellala A, Hesse A, Nörenberg D, Stoll R, Schmelz H, Schoenberg SO, Waldeck S

pubmed logopapersJun 1 2025
Urolithiasis, a common and painful urological condition, is influenced by factors such as lifestyle, genetics, and medication. Differentiating between different types of kidney stones is crucial for personalized therapy. The purpose of this study is to investigate the use of photon-counting computed tomography (PCCT) in combination with radiomics and machine learning to develop a method for automated and detailed characterization of kidney stones. This approach aims to enhance the accuracy and detail of stone classification beyond what is achievable with conventional computed tomography (CT) and dual-energy CT (DECT). In this ex vivo study, 135 kidney stones were first classified using infrared spectroscopy. All stones were then scanned in a PCCT embedded in a phantom. Various monoenergetic reconstructions were generated, and radiomics features were extracted. Statistical analysis was performed using Random Forest (RF) classifiers for both individual reconstructions and a combined model. The combined model, using radiomics features from all monoenergetic reconstructions, significantly outperformed individual reconstructions and SPP parameters, with an AUC of 0.95 and test accuracy of 0.81 for differentiating all six stone types. Feature importance analysis identified key parameters, including NGTDM_Strength and wavelet-LLH_firstorder_Variance. This ex vivo study demonstrates that radiomics-driven PCCT analysis can improve differentiation between kidney stone subtypes. The combined model outperformed individual monoenergetic levels, highlighting the potential of spectral profiling in PCCT to optimize treatment through image-based strategies. Question How can photon-counting computed tomography (PCCT) combined with radiomics improve the differentiation of kidney stone types beyond conventional CT and dual-energy CT, enhancing personalized therapy? Findings Our ex vivo study demonstrates that a combined spectral-driven radiomics model achieved 95% AUC and 81% test accuracy in differentiating six kidney stone types. Clinical relevance Implementing PCCT-based spectral-driven radiomics allows for precise non-invasive differentiation of kidney stone types, leading to improved diagnostic accuracy and more personalized, effective treatment strategies, potentially reducing the need for invasive procedures and recurrence.
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