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Optimizing stroke detection with genetic algorithm-based feature selection in deep learning models.

Nayak GS, Mallick PK, Sahu DP, Kathi A, Reddy R, Viyyapu J, Pabbisetti N, Udayana SP, Sanapathi H

pubmed logopapersJun 14 2025
Brain stroke is a leading cause of disability and mortality worldwide, necessitating the development of accurate and efficient diagnostic models. In this study, we explore the integration of Genetic Algorithm (GA)-based feature selection with three state-of-the-art deep learning architectures InceptionV3, VGG19, and MobileNetV2 to enhance stroke detection from neuroimaging data. GA is employed to optimize feature selection, reducing redundancy and improving model performance. The selected features are subsequently fed into the respective deep-learning models for classification. The dataset used in this study comprises neuroimages categorized into "Normal" and "Stroke" classes. Experimental results demonstrate that incorporating GA improves classification accuracy while reducing computational complexity. A comparative analysis of the three architectures reveals their effectiveness in stroke detection, with MobileNetV2 achieving the highest accuracy of 97.21%. Notably, the integration of Genetic Algorithms with MobileNetV2 for feature selection represents a novel contribution, setting this study apart from prior approaches that rely solely on traditional CNN pipelines. Owing to its lightweight design and low computational demands, MobileNetV2 also offers significant advantages for real-time clinical deployment, making it highly applicable for use in emergency care settings where rapid diagnosis is critical. Additionally, performance metrics such as precision, recall, F1-score, and Receiver Operating Characteristic (ROC) curves are evaluated to provide comprehensive insights into model efficacy. This research underscores the potential of genetic algorithm-driven optimization in enhancing deep learning-based medical image classification, paving the way for more efficient and reliable stroke diagnosis.

A multimodal fusion system predicting survival benefits of immune checkpoint inhibitors in unresectable hepatocellular carcinoma.

Xu J, Wang T, Li J, Wang Y, Zhu Z, Fu X, Wang J, Zhang Z, Cai W, Song R, Hou C, Yang LZ, Wang H, Wong STC, Li H

pubmed logopapersJun 14 2025
Early identification of unresectable hepatocellular carcinoma (HCC) patients who may benefit from immune checkpoint inhibitors (ICIs) is crucial for optimizing outcomes. Here, we developed a multimodal fusion (MMF) system integrating CT-derived deep learning features and clinical data to predict overall survival (OS) and progression-free survival (PFS). Using retrospective multicenter data (n = 859), the MMF combining an ensemble deep learning (Ensemble-DL) model with clinical variables achieved strong external validation performance (C-index: OS = 0.74, PFS = 0.69), outperforming radiomics (29.8% OS improvement), mRECIST (27.6% OS improvement), clinical benchmarks (C-index: OS = 0.67, p = 0.0011; PFS = 0.65, p = 0.033), and Ensemble-DL (C-index: OS = 0.69, p = 0.0028; PFS = 0.66, p = 0.044). The MMF system effectively stratified patients across clinical subgroups and demonstrated interpretability through activation maps and radiomic correlations. Differential gene expression analysis revealed enrichment of the PI3K/Akt pathway in patients identified by the MMF system. The MMF system provides an interpretable, clinically applicable approach to guide personalized ICI treatment in unresectable HCC.

Hierarchical Deep Feature Fusion and Ensemble Learning for Enhanced Brain Tumor MRI Classification

Zahid Ullah, Jihie Kim

arxiv logopreprintJun 14 2025
Accurate brain tumor classification is crucial in medical imaging to ensure reliable diagnosis and effective treatment planning. This study introduces a novel double ensembling framework that synergistically combines pre-trained deep learning (DL) models for feature extraction with optimized machine learning (ML) classifiers for robust classification. The framework incorporates comprehensive preprocessing and data augmentation of brain magnetic resonance images (MRI), followed by deep feature extraction using transfer learning with pre-trained Vision Transformer (ViT) networks. The novelty lies in the dual-level ensembling strategy: feature-level ensembling, which integrates deep features from the top-performing ViT models, and classifier-level ensembling, which aggregates predictions from hyperparameter-optimized ML classifiers. Experiments on two public Kaggle MRI brain tumor datasets demonstrate that this approach significantly surpasses state-of-the-art methods, underscoring the importance of feature and classifier fusion. The proposed methodology also highlights the critical roles of hyperparameter optimization (HPO) and advanced preprocessing techniques in improving diagnostic accuracy and reliability, advancing the integration of DL and ML for clinically relevant medical image analysis.

Does restrictive anorexia nervosa impact brain aging? A machine learning approach to estimate age based on brain structure.

Gupta Y, de la Cruz F, Rieger K, di Giuliano M, Gaser C, Cole J, Breithaupt L, Holsen LM, Eddy KT, Thomas JJ, Cetin-Karayumak S, Kubicki M, Lawson EA, Miller KK, Misra M, Schumann A, Bär KJ

pubmed logopapersJun 13 2025
Anorexia nervosa (AN), a severe eating disorder marked by extreme weight loss and malnutrition, leads to significant alterations in brain structure. This study used machine learning (ML) to estimate brain age from structural MRI scans and investigated brain-predicted age difference (brain-PAD) as a potential biomarker in AN. Structural MRI scans were collected from female participants aged 10-40 years across two institutions (Boston, USA, and Jena, Germany), including acute AN (acAN; n=113), weight-restored AN (wrAN; n=35), and age-matched healthy controls (HC; n=90). The ML model was trained on 3487 healthy female participants (ages 5-45 years) from ten datasets, using 377 neuroanatomical features extracted from T1-weighted MRI scans. The model achieved strong performance with a mean absolute error (MAE) of 1.93 years and a correlation of r = 0.88 in HCs. In acAN patients, brain age was overestimated by an average of +2.25 years, suggesting advanced brain aging. In contrast, wrAN participants showed significantly lower brain-PAD than acAN (+0.26 years, p=0.0026) and did not differ from HC (p=0.98), suggesting normalization of brain age estimates following weight restoration. A significant group-by-age interaction effect on predicted brain age (p<0.001) indicated that brain age deviations were most pronounced in younger acAN participants. Brain-PAD in acAN was significantly negatively associated with BMI (r = -0.291, p<sub>fdr</sub> = 0.005), but not in wrAN or HC groups. Importantly, no significant associations were found between brain-PAD and clinical symptom severity. These findings suggest that acute AN is linked to advanced brain aging during the acute stage, and that may partially normalize following weight recovery.

Prediction of NIHSS Scores and Acute Ischemic Stroke Severity Using a Cross-attention Vision Transformer Model with Multimodal MRI.

Tuxunjiang P, Huang C, Zhou Z, Zhao W, Han B, Tan W, Wang J, Kukun H, Zhao W, Xu R, Aihemaiti A, Subi Y, Zou J, Xie C, Chang Y, Wang Y

pubmed logopapersJun 13 2025
This study aimed to develop and evaluate models for classifying the severity of neurological impairment in acute ischemic stroke (AIS) patients using multimodal MRI data. A retrospective cohort of 1227 AIS patients was collected and categorized into mild (NIHSS<5) and moderate-to-severe (NIHSS≥5) stroke groups based on NIHSS scores. Eight baseline models were constructed for performance comparison, including a clinical model, radiomics models using DWI or multiple MRI sequences, and deep learning (DL) models with varying fusion strategies (early fusion, later fusion, full cross-fusion, and DWI-centered cross-fusion). All DL models were based on the Vision Transformer (ViT) framework. Model performance was evaluated using metrics such as AUC and ACC, and robustness was assessed through subgroup analyses and visualization using Grad-CAM. Among the eight models, the DL model using DWI as the primary sequence with cross-fusion of other MRI sequences (Model 8) achieved the best performance. In the test cohort, Model 8 demonstrated an AUC of 0.914, ACC of 0.830, and high specificity (0.818) and sensitivity (0.853). Subgroup analysis shows that model 8 is robust in most subgroups with no significant prediction difference (p > 0.05), and the AUC value consistently exceeds 0.900. A significant predictive difference was observed in the BMI group (p < 0.001). The results of external validation showed that the AUC values of the model 8 in center 2 and center 3 reached 0.910 and 0.912, respectively. Visualization using Grad-CAM emphasized the infarct core as the most critical region contributing to predictions, with consistent feature attention across DWI, T1WI, T2WI, and FLAIR sequences, further validating the interpretability of the model. A ViT-based DL model with cross-modal fusion strategies provides a non-invasive and efficient tool for classifying AIS severity. Its robust performance across subgroups and interpretability make it a promising tool for personalized management and decision-making in clinical practice.

Beyond Benchmarks: Towards Robust Artificial Intelligence Bone Segmentation in Socio-Technical Systems

Xie, K., Gruber, L. J., Crampen, M., Li, Y., Ferreira, A., Tappeiner, E., Gillot, M., Schepers, J., Xu, J., Pankert, T., Beyer, M., Shahamiri, N., ten Brink, R., Dot, G., Weschke, C., van Nistelrooij, N., Verhelst, P.-J., Guo, Y., Xu, Z., Bienzeisler, J., Rashad, A., Flügge, T., Cotton, R., Vinayahalingam, S., Ilesan, R., Raith, S., Madsen, D., Seibold, C., Xi, T., Berge, S., Nebelung, S., Kodym, O., Sundqvist, O., Thieringer, F., Lamecker, H., Coppens, A., Potrusil, T., Kraeima, J., Witjes, M., Wu, G., Chen, X., Lambrechts, A., Cevidanes, L. H. S., Zachow, S., Hermans, A., Truhn, D., Alves,

medrxiv logopreprintJun 13 2025
Despite the advances in automated medical image segmentation, AI models still underperform in various clinical settings, challenging real-world integration. In this multicenter evaluation, we analyzed 20 state-of-the-art mandibular segmentation models across 19,218 segmentations of 1,000 clinically resampled CT/CBCT scans. We show that segmentation accuracy varies by up to 25% depending on socio-technical factors such as voxel size, bone orientation, and patient conditions such as osteosynthesis or pathology. Higher sharpness, isotropic smaller voxels, and neutral orientation significantly improved results, while metallic osteosynthesis and anatomical complexity led to significant degradation. Our findings challenge the common view of AI models as "plug-and-play" tools and suggest evidence-based optimization recommendations for both clinicians and developers. This will in turn boost the integration of AI segmentation tools in routine healthcare.

Deep-Learning Based Contrast Boosting Improves Lesion Visualization and Image Quality: A Multi-Center Multi-Reader Study on Clinical Performance with Standard Contrast Enhanced MRI of Brain Tumors

Pasumarthi, S., Campbell Arnold, T., Colombo, S., Rudie, J. D., Andre, J. B., Elor, R., Gulaka, P., Shankaranarayanan, A., Erb, G., Zaharchuk, G.

medrxiv logopreprintJun 13 2025
BackgroundGadolinium-based Contrast Agents (GBCAs) are used in brain MRI exams to improve the visualization of pathology and improve the delineation of lesions. Higher doses of GBCAs can improve lesion sensitivity but involve substantial deviation from standard-of-care procedures and may have safety implications, particularly in the light of recent findings on gadolinium retention and deposition. PurposeTo evaluate the clinical performance of an FDA cleared deep-learning (DL) based contrast boosting algorithm in routine clinical brain MRI exams. MethodsA multi-center retrospective database of contrast-enhanced brain MRI images (obtained from April 2017 to December 2023) was used to evaluate a DL-based contrast boosting algorithm. Pre-contrast and standard post-contrast (SC) images were processed with the algorithm to obtain contrast boosted (CB) images. Quantitative performance of CB images in comparison to SC images was compared using contrast-to-noise ratio (CNR), lesion-to-brain ratio (LBR) and contrast enhancement percentage (CEP). Three board-certified radiologists reviewed CB and SC images side-by-side for qualitative evaluation and rated them on a 4-point Likert scale for lesion contrast enhancement, border delineation, internal morphology, overall image quality, presence of artefacts, and changes in vessel conspicuity. The presence, cause, and severity of any false lesions was recorded. CB results were compared to SC using Wilcoxon signed rank test for statistical significance. ResultsBrain MRI images from 110 patients (47 {+/-} 22 years; 52 Females, 47 Males, 11 N/A) were evaluated. CB images had superior quantitative performance than SC images in terms of CNR (+634%), LBR (+70%) and CEP (+150%). In the qualitative assessment CB images showed better lesion visualization (3.73 vs 3.16) and had better image quality (3.55 vs 3.07). Readers were able to rule out all false lesions on CB by using SC for comparison. ConclusionsDeep learning based contrast boosting improves lesion visualization and image quality without increasing contrast dosage. Key ResultsO_LIIn a retrospective study of 110 patients, deep-learning based contrast boosted (CB) images showed better lesion visualization than standard post-contrast (SC) brain MRI images (3.73 vs 3.16; mean reader scores [4-point Likert scale]) C_LIO_LICB images had better overall image quality than SC images (3.55 vs 3.07) C_LIO_LIContrast-to-noise ratio, Lesion-to-brain Ratio and Contrast Enhancement Percentage for CB images were significantly higher than SC images (+729%, +88% and +165%; p < 0.001) C_LI Summary StatementDeep-learning based contrast boosting achieves better lesion visualization and overall image quality and provides more contrast information, without increasing the contrast dosage in contrast-enhanced brain MR protocols.

Radiomic Analysis of Molecular Magnetic Resonance Imaging of Aortic Atherosclerosis in Rabbits.

Lee H

pubmed logopapersJun 13 2025
Atherosclerosis involves not only the narrowing of blood vessels and plaque accumulation but also changes in plaque composition and stability, all of which are critical for disease progression. Conventional imaging techniques such as magnetic resonance angiography (MRA) and digital subtraction angiography (DSA) primarily assess luminal narrowing and plaque size, but have limited capability in identifying plaque instability and inflammation within the vascular muscle wall. This study aimed to develop and evaluate a novel imaging approach using ligand-modified nanomagnetic contrast (lmNMC) nanoprobes in combination with molecular magnetic resonance imaging (mMRI) to visualize and quantify vascular inflammation and plaque characteristics in a rabbit model of atherosclerosis. A rabbit model of atherosclerosis was established and underwent mMRI before and after administration of lmNMC nanoprobes. Radiomic features were extracted from segmented images using discrete wavelet transform (DWT) to assess spatial frequency changes and gray-level co-occurrence matrix (GLCM) analysis to evaluate textural properties. Further radiomic analysis was performed using neural network-based regression and clustering, including the application of self-organizing maps (SOMs) to validate the consistency of radiomic pattern between training and testing data. Radiomic analysis revealed significant changes in spatial frequency between pre- and post-contrast images in both the horizontal and vertical directions. GLCM analysis showed an increase in contrast from 0.08463 to 0.1021 and a slight decrease in homogeneity from 0.9593 to 0.9540. Energy values declined from 0.2256 to 0.2019, while correlation increased marginally from 0.9659 to 0.9708. Neural network regression demonstrated strong convergence between target and output coordinates. Additionally, SOM clustering revealed consistent weight locations and neighbor distances across datasets, supporting the reliability of the radiomic validation. The integration of lmNMC nanoprobes with mMRI enables detailed visualization of atherosclerotic plaques and surrounding vascular inflammation in a preclinical model. This method shows promise for enhancing the characterization of unstable plaques and may facilitate early detection of high-risk atherosclerotic lesions, potentially improving diagnostic and therapeutic strategies.

Clinically reported covert cerebrovascular disease and risk of neurological disease: a whole-population cohort of 395,273 people using natural language processing

Iveson, M. H., Mukherjee, M., Davidson, E. M., Zhang, H., Sherlock, L., Ball, E. L., Mair, G., Hosking, A., Whalley, H., Poon, M. T. C., Wardlaw, J. M., Kent, D., Tobin, R., Grover, C., Alex, B., Whiteley, W. N.

medrxiv logopreprintJun 13 2025
ImportanceUnderstanding the relevance of covert cerebrovascular disease (CCD) for later health will allow clinicians to more effectively monitor and target interventions. ObjectiveTo examine the association between clinically reported CCD, measured using natural language processing (NLP), and subsequent disease risk. Design, Setting and ParticipantsWe conducted a retrospective e-cohort study using linked health record data. From all people with clinical brain imaging in Scotland from 2010 to 2018, we selected people with no prior hospitalisation for neurological disease. The data were analysed from March 2024 to June 2025. ExposureFour phenotypes were identified with NLP of imaging reports: white matter hypoattenuation or hyperintensities (WMH), lacunes, cortical infarcts and cerebral atrophy. Main outcomes and measuresHazard ratios (aHR) for stroke, dementia, and Parkinsons disease (conditions previously associated with CCD), epilepsy (a brain-based control condition) and colorectal cancer (a non-brain control condition), adjusted for age, sex, deprivation, region, scan modality, and pre-scan healthcare, were calculated for each phenotype. ResultsFrom 395,273 people with brain imaging and no history of neurological disease, 145,978 (37%) had [&ge;]1 phenotype. For each phenotype, the aHR of any stroke was: WMH 1.4 (95%CI: 1.3-1.4), lacunes 1.6 (1.5-1.6), cortical infarct 1.7 (1.6-1.8), and cerebral atrophy 1.1 (1.0-1.1). The aHR of any dementia was: WMH, 1.3 (1.3-1.3), lacunes, 1.0 (0.9-1.0), cortical infarct 1.1 (1.0-1.1) and cerebral atrophy 1.7 (1.7-1.7). The aHR of Parkinsons disease was, in people with a report of: WMH 1.1 (1.0-1.2), lacunes 1.1 (0.9-1.2), cortical infarct 0.7 (0.6-0.9) and cerebral atrophy 1.4 (1.3-1.5). The aHRs between CCD phenotypes and epilepsy and colorectal cancer overlapped the null. Conclusions and RelevanceNLP identified CCD and atrophy phenotypes from routine clinical image reports, and these had important associations with future stroke, dementia and Parkinsons disease. Prevention of neurological disease in people with CCD should be a priority for healthcare providers and policymakers. Key PointsO_ST_ABSQuestionC_ST_ABSAre measures of Covert Cerebrovascular Disease (CCD) associated with the risk of subsequent disease (stroke, dementia, Parkinsons disease, epilepsy, and colorectal cancer)? FindingsThis study used a validated NLP algorithm to identify CCD (white matter hypoattenuation/hyperintensities, lacunes, cortical infarcts) and cerebral atrophy from both MRI and computed tomography (CT) imaging reports generated during routine healthcare in >395K people in Scotland. In adjusted models, we demonstrate higher risk of dementia (particularly Alzheimers disease) in people with atrophy, and higher risk of stroke in people with cortical infarcts. However, associations with an age-associated control outcome (colorectal cancer) were neutral, supporting a causal relationship. It also highlights differential associations between cerebral atrophy and dementia and cortical infarcts and stroke risk. MeaningCCD or atrophy on brain imaging reports in routine clinical practice is associated with a higher risk of stroke or dementia. Evidence is needed to support treatment strategies to reduce this risk. NLP can identify these important, otherwise uncoded, disease phenotypes, allowing research at scale into imaging-based biomarkers of dementia and stroke.

The Machine Learning Models in Major Cardiovascular Adverse Events Prediction Based on Coronary Computed Tomography Angiography: Systematic Review.

Ma Y, Li M, Wu H

pubmed logopapersJun 13 2025
Coronary computed tomography angiography (CCTA) has emerged as the first-line noninvasive imaging test for patients at high risk of coronary artery disease (CAD). When combined with machine learning (ML), it provides more valid evidence in diagnosing major adverse cardiovascular events (MACEs). Radiomics provides informative multidimensional features that can help identify high-risk populations and can improve the diagnostic performance of CCTA. However, its role in predicting MACEs remains highly debated. We evaluated the diagnostic value of ML models constructed using radiomic features extracted from CCTA in predicting MACEs, and compared the performance of different learning algorithms and models, thereby providing clinical recommendations for the diagnosis, treatment, and prognosis of MACEs. We comprehensively searched 5 online databases, Cochrane Library, Web of Science, Elsevier, CNKI, and PubMed, up to September 10, 2024, for original studies that used ML models among patients who underwent CCTA to predict MACEs and reported clinical outcomes and endpoints related to it. Risk of bias in the ML models was assessed by the Prediction Model Risk of Bias Assessment Tool, while the radiomics quality score (RQS) was used to evaluate the methodological quality of the radiomics prediction model development and validation. We also followed the TRIPOD (Transparent Reporting of a multivariable prediction model for Individual Prognosis Or Diagnosis) guidelines to ensure transparency of ML models included. Meta-analysis was performed using Meta-DiSc software (version 1.4), which included the I² score and Cochran Q test, along with StataMP 17 (StataCorp) to assess heterogeneity and publication bias. Due to the high heterogeneity observed, subgroup analysis was conducted based on different model groups. Ten studies were included in the analysis, 5 (50%) of which differentiated between training and testing groups, where the training set collected 17 kinds of models and the testing set gathered 26 models. The pooled area under the receiver operating characteristic (AUROC) curve for ML models predicting MACEs was 0.7879 in the training set and 0.7981 in the testing set. Logistic regression (LR), the most commonly used algorithm, achieved an AUROC of 0.8229 in the testing group and 0.7983 in the training group. Non-LR models yielded AUROCs of 0.7390 in the testing set and 0.7648 in the training set, while the random forest (RF) models reached an AUROC of 0.8444 in the training group. Study limitations included a limited number of studies, high heterogeneity, and the types of included studies. The performance of ML models for predicting MACEs was found to be superior to that of general models based on basic feature extraction and integration from CCTA. Specifically, LR-based ML diagnostic models demonstrated significant clinical potential, particularly when combined with clinical features, and are worth further validation through more clinical trials. PROSPERO CRD42024596364; https://www.crd.york.ac.uk/PROSPERO/view/CRD42024596364.
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