Atherosclerosis involves not only the narrowing of blood vessels and plaque accumulation but also changes in plaque composition and stability, all of which are critical for disease progression. Conventional imaging techniques such as magnetic resonance angiography (MRA) and digital subtraction angiography (DSA) primarily assess luminal narrowing and plaque size, but have limited capability in identifying plaque instability and inflammation within the vascular muscle wall. This study aimed to develop and evaluate a novel imaging approach using ligand-modified nanomagnetic contrast (lmNMC) nanoprobes in combination with molecular magnetic resonance imaging (mMRI) to visualize and quantify vascular inflammation and plaque characteristics in a rabbit model of atherosclerosis. A rabbit model of atherosclerosis was established and underwent mMRI before and after administration of lmNMC nanoprobes. Radiomic features were extracted from segmented images using discrete wavelet transform (DWT) to assess spatial frequency changes and gray-level co-occurrence matrix (GLCM) analysis to evaluate textural properties. Further radiomic analysis was performed using neural network-based regression and clustering, including the application of self-organizing maps (SOMs) to validate the consistency of radiomic pattern between training and testing data. Radiomic analysis revealed significant changes in spatial frequency between pre- and post-contrast images in both the horizontal and vertical directions. GLCM analysis showed an increase in contrast from 0.08463 to 0.1021 and a slight decrease in homogeneity from 0.9593 to 0.9540. Energy values declined from 0.2256 to 0.2019, while correlation increased marginally from 0.9659 to 0.9708. Neural network regression demonstrated strong convergence between target and output coordinates. Additionally, SOM clustering revealed consistent weight locations and neighbor distances across datasets, supporting the reliability of the radiomic validation. The integration of lmNMC nanoprobes with mMRI enables detailed visualization of atherosclerotic plaques and surrounding vascular inflammation in a preclinical model. This method shows promise for enhancing the characterization of unstable plaques and may facilitate early detection of high-risk atherosclerotic lesions, potentially improving diagnostic and therapeutic strategies.

Tissue biology involves an intricate balance between cell-intrinsic processes and interactions between cells organized in specific spatial patterns, which can be respectively captured by single cell profiling methods, such as single cell RNA-seq (scRNA-seq) and spatial transcriptomics, and histology imaging data, such as Hematoxylin-and-Eosin (H&E) stains. While single cell profiles provide rich molecular information, they can be challenging to collect routinely in the clinic and either lack spatial resolution or high gene throughput. Conversely, histological H&E assays have been a cornerstone of tissue pathology for decades, but do not directly report on molecular details, although the observed structure they capture arises from molecules and cells. Here, we leverage vision transformers and adversarial deep learning to develop the Single Cell omics from Histology Analysis Framework (SCHAF), which generates a tissue sample's spatially-resolved whole transcriptome single cell omics dataset from its H&E histology image. We demonstrate SCHAF on a variety of tissues--including lung cancer, metastatic breast cancer, placentae, and whole mouse pups--training with matched samples analyzed by sc/snRNA-seq, H&E staining, and, when available, spatial transcriptomics. SCHAF generated appropriate single cell profiles from histology images in test data, related them spatially, and compared well to ground-truth scRNA-Seq, expert pathologist annotations, or direct spatial transcriptomic measurements, with some limitations. SCHAF opens the way to next-generation H&E analyses and an integrated understanding of cell and tissue biology in health and disease.

The long-term prognostic significance of the coronary computed tomography angiography (CCTA)-derived fractional flow reserve (CT-FFR) for non-obstructive coronary artery disease (CAD) is uncertain. We aimed to investigate the additional prognostic value of CT-FFR beyond CCTA-defined atherosclerotic burden for long-term outcomes. Consecutive patients with suspected stable CAD were candidates for this retrospective cohort study. Deep-learning-based vessel-specific CT-FFR was calculated. All patients enrolled were followed for at least 5 years. The primary outcome was major adverse cardiovascular events (MACE). Predictive abilities for MACE were compared among three models (model 1, constructed using clinical variables; model 2, model 1 + CCTA-derived atherosclerotic burden (Leiden risk score and segment involvement score); and model 3, model 2 + CT-FFR). A total of 1944 patients (median age, 59 (53-65) years; 53.0% men) were included. During a median follow-up time of 73.4 (71.2-79.7) months, 64 patients (3.3%) experienced MACE. In multivariate-adjusted Cox models, CT-FFR ≤ 0.80 (HR: 7.18; 95% CI: 4.25-12.12; p < 0.001) was a robust and independent predictor for MACE. The discriminant ability was higher in model 2 than in model 1 (C-index, 0.76 vs. 0.68; p = 0.001) and was further promoted by adding CT-FFR to model 3 (C-index, 0.83 vs. 0.76; p < 0.001). Integrated discrimination improvement (IDI) was 0.033 (p = 0.022) for model 2 beyond model 1. Of note, compared with model 2, model 3 also exhibited improved discrimination (IDI = 0.056; p < 0.001). In patients with non-obstructive CAD, CT-FFR provides robust and incremental prognostic information for predicting long-term outcomes. The combined model including CT-FFR and CCTA-defined atherosclerotic burden exhibits improved prediction abilities, which is helpful for risk stratification. Question Prognostic significance of the CT-fractional flow reserve (FFR) in non-obstructive coronary artery disease for long-term outcomes merits further investigation. Findings Our data strongly emphasized the independent and additional predictive value of CT-FFR beyond coronary CTA-defined atherosclerotic burden and clinical risk factors. Clinical relevance The new combined predictive model incorporating CT-FFR can be satisfactorily used for risk stratification of patients with non-obstructive coronary artery disease by identifying those who are truly suitable for subsequent high-intensity preventative therapies and extensive follow-up for prognostic reasons.

This study aimed to evaluate the quantitative and qualitative performances of ultra-low-dose computed tomography (CT) with deep learning image reconstruction (DLR) compared with those of hybrid iterative reconstruction (IR) for preoperative paranasal sinus (PNS) imaging. This retrospective analysis included 132 patients who underwent non-contrast ultra-low-dose sinus CT (0.03 mSv). Images were reconstructed using hybrid IR and DLR. Objective image quality metrics, including image noise, signal-to-noise ratio (SNR), contrast-to-noise ratio (CNR), noise power spectrum (NPS), and no-reference perceptual image sharpness, were assessed. Two board-certified radiologists independently performed subjective image quality evaluations. The ultra-low-dose CT protocol achieved a low radiation dose (effective dose: 0.03 mSv). DLR showed significantly lower image noise (28.62 ± 4.83 Hounsfield units) compared to hybrid IR (140.70 ± 16.04, p < 0.001), with DLR yielding smoother and more uniform images. DLR demonstrated significantly improved SNR (22.47 ± 5.82 vs 9.14 ± 2.45, p < 0.001) and CNR (71.88 ± 14.03 vs 11.81 ± 1.50, p < 0.001). NPS analysis revealed that DLR reduced the noise magnitude and NPS peak values. Additionally, DLR demonstrated significantly sharper images (no-reference perceptual sharpness metric: 0.56 ± 0.04) compared to hybrid IR (0.36 ± 0.01). Radiologists rated DLR as superior in overall image quality, bone structure visualization, and diagnostic confidence compared to hybrid IR at ultra-low-dose CT. DLR significantly outperformed hybrid IR in ultra-low-dose PNS CT by reducing image noise, improving SNR and CNR, enhancing image sharpness, and maintaining critical anatomical visualization, demonstrating its potential for effective preoperative planning with minimal radiation exposure. Question Ultra-low-dose CT for paranasal sinuses is essential for patients requiring repeated scans and functional endoscopic sinus surgery (FESS) planning to reduce cumulative radiation exposure. Findings DLR outperformed hybrid IR in ultra-low-dose paranasal sinus CT. Clinical relevance Ultra-low-dose CT with DLR delivers sufficient image quality for detailed surgical planning, effectively minimizing unnecessary radiation exposure to enhance patient safety.

We explore biases present in publicly available fetal ultrasound (US) imaging datasets, currently at the disposal of researchers to train deep learning (DL) algorithms for prenatal diagnostics. As DL increasingly permeates the field of medical imaging, the urgency to critically evaluate the fairness of benchmark public datasets used to train them grows. Our thorough investigation reveals a multifaceted bias problem, encompassing issues such as lack of demographic representativeness, limited diversity in clinical conditions depicted, and variability in US technology used across datasets. We argue that these biases may significantly influence DL model performance, which may lead to inequities in healthcare outcomes. To address these challenges, we recommend a multilayered approach. This includes promoting practices that ensure data inclusivity, such as diversifying data sources and populations, and refining model strategies to better account for population variances. These steps will enhance the trustworthiness of DL algorithms in fetal US analysis.

This study aimed to develop and evaluate models for classifying the severity of neurological impairment in acute ischemic stroke (AIS) patients using multimodal MRI data. A retrospective cohort of 1227 AIS patients was collected and categorized into mild (NIHSS<5) and moderate-to-severe (NIHSS≥5) stroke groups based on NIHSS scores. Eight baseline models were constructed for performance comparison, including a clinical model, radiomics models using DWI or multiple MRI sequences, and deep learning (DL) models with varying fusion strategies (early fusion, later fusion, full cross-fusion, and DWI-centered cross-fusion). All DL models were based on the Vision Transformer (ViT) framework. Model performance was evaluated using metrics such as AUC and ACC, and robustness was assessed through subgroup analyses and visualization using Grad-CAM. Among the eight models, the DL model using DWI as the primary sequence with cross-fusion of other MRI sequences (Model 8) achieved the best performance. In the test cohort, Model 8 demonstrated an AUC of 0.914, ACC of 0.830, and high specificity (0.818) and sensitivity (0.853). Subgroup analysis shows that model 8 is robust in most subgroups with no significant prediction difference (p > 0.05), and the AUC value consistently exceeds 0.900. A significant predictive difference was observed in the BMI group (p < 0.001). The results of external validation showed that the AUC values of the model 8 in center 2 and center 3 reached 0.910 and 0.912, respectively. Visualization using Grad-CAM emphasized the infarct core as the most critical region contributing to predictions, with consistent feature attention across DWI, T1WI, T2WI, and FLAIR sequences, further validating the interpretability of the model. A ViT-based DL model with cross-modal fusion strategies provides a non-invasive and efficient tool for classifying AIS severity. Its robust performance across subgroups and interpretability make it a promising tool for personalized management and decision-making in clinical practice.

High-resolution computed tomography (CT) imaging is essential for medical diagnosis but requires increased radiation exposure, creating a critical trade-off between image quality and patient safety. While deep learning methods have shown promise in CT super-resolution, they face challenges with complex degradations and limited medical training data. Meanwhile, large-scale pre-trained diffusion models, particularly Stable Diffusion, have demonstrated remarkable capabilities in synthesizing fine details across various vision tasks. Motivated by this, we propose a novel framework that adapts Stable Diffusion for CT blind super-resolution. We employ a practical degradation model to synthesize realistic low-quality images and leverage a pre-trained vision-language model to generate corresponding descriptions. Subsequently, we perform super-resolution using Stable Diffusion with a specialized controlling strategy, conditioned on both low-resolution inputs and the generated text descriptions. Extensive experiments show that our method outperforms existing approaches, demonstrating its potential for achieving high-quality CT imaging at reduced radiation doses. Our code will be made publicly available.

Anorexia nervosa (AN), a severe eating disorder marked by extreme weight loss and malnutrition, leads to significant alterations in brain structure. This study used machine learning (ML) to estimate brain age from structural MRI scans and investigated brain-predicted age difference (brain-PAD) as a potential biomarker in AN. Structural MRI scans were collected from female participants aged 10-40 years across two institutions (Boston, USA, and Jena, Germany), including acute AN (acAN; n=113), weight-restored AN (wrAN; n=35), and age-matched healthy controls (HC; n=90). The ML model was trained on 3487 healthy female participants (ages 5-45 years) from ten datasets, using 377 neuroanatomical features extracted from T1-weighted MRI scans. The model achieved strong performance with a mean absolute error (MAE) of 1.93 years and a correlation of r = 0.88 in HCs. In acAN patients, brain age was overestimated by an average of +2.25 years, suggesting advanced brain aging. In contrast, wrAN participants showed significantly lower brain-PAD than acAN (+0.26 years, p=0.0026) and did not differ from HC (p=0.98), suggesting normalization of brain age estimates following weight restoration. A significant group-by-age interaction effect on predicted brain age (p<0.001) indicated that brain age deviations were most pronounced in younger acAN participants. Brain-PAD in acAN was significantly negatively associated with BMI (r = -0.291, p_fdr = 0.005), but not in wrAN or HC groups. Importantly, no significant associations were found between brain-PAD and clinical symptom severity. These findings suggest that acute AN is linked to advanced brain aging during the acute stage, and that may partially normalize following weight recovery.

Purpose: Inversion recovery prepared ultra-short echo time (IR-UTE)-based MRI enables radiation-free visualization of osseous tissue. However, sufficient signal-to-noise ratio (SNR) can only be obtained with long acquisition times. This study proposes a data-driven approach to reconstruct undersampled IR-UTE knee data, thereby accelerating MR-based 3D imaging of bones. Methods: Data were acquired with a 3D radial IR-UTE pulse sequence, implemented using the open-source framework Pulseq. A denoising convolutional neural network (DnCNN) was trained in a supervised fashion using data from eight healthy subjects. Conjugate gradient sensitivity encoding (CG-SENSE) reconstructions of different retrospectively undersampled subsets (corresponding to 2.5-min, 5-min and 10-min acquisition times) were paired with the respective reference dataset reconstruction (30-min acquisition time). The DnCNN was then integrated into a Landweber-based reconstruction algorithm, enabling physics-based iterative reconstruction. Quantitative evaluations of the approach were performed using one prospectively accelerated scan as well as retrospectively undersampled datasets from four additional healthy subjects, by assessing the structural similarity index measure (SSIM), the peak signal-to-noise ratio (PSNR), the normalized root mean squared error (NRMSE), and the perceptual sharpness index (PSI). Results: Both the reconstructions of prospective and retrospective acquisitions showed good agreement with the reference dataset, indicating high image quality, particularly for an acquisition time of 5 min. The proposed method effectively preserves contrast and structural details while suppressing noise, albeit with a slight reduction in sharpness. Conclusion: The proposed method is poised to enable MR-based bone assessment in the knee within clinically feasible scan times.

The adoption of neural network models in medical imaging has been constrained by strict privacy regulations, limited data availability, high acquisition costs, and demographic biases. Deep generative models offer a promising solution by generating synthetic data that bypasses privacy concerns and addresses fairness by producing samples for under-represented groups. However, unlike natural images, medical imaging requires validation not only for fidelity (e.g., Fr\'echet Inception Score) but also for morphological and clinical accuracy. This is particularly true for colour fundus retinal imaging, which requires precise replication of the retinal vascular network, including vessel topology, continuity, and thickness. In this study, we in-vestigated whether a distance-based loss function based on deep activation layers of a large foundational model trained on large corpus of domain data, colour fundus imaging, offers advantages over a perceptual loss and edge-detection based loss functions. Our extensive validation pipeline, based on both domain-free and domain specific tasks, suggests that domain-specific deep features do not improve autoen-coder image generation. Conversely, our findings highlight the effectiveness of con-ventional edge detection filters in improving the sharpness of vascular structures in synthetic samples.