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Robust Multi-contrast MRI Medical Image Translation via Knowledge Distillation and Adversarial Attack.

Zhao X, Liang F, Long C, Yuan Z, Zhao J

pubmed logopapersJul 2 2025
Medical image translation is of great value but is very difficult due to the requirement with style change of noise pattern and anatomy invariance of image content. Various deep learning methods like the mainstream GAN, Transformer and Diffusion models have been developed to learn the multi-modal mapping to obtain the translated images, but the results from the generator are still far from being perfect for medical images. In this paper, we propose a robust multi-contrast translation framework for MRI medical images with knowledge distillation and adversarial attack, which can be integrated with any generator. The additional refinement network consists of teacher and student modules with similar structures but different inputs. Unlike the existing knowledge distillation works, our teacher module is designed as a registration network with more inputs to better learn the noise distribution well and further refine the translated results in the training stage. The knowledge is then well distilled to the student module to ensure that better translation results are generated. We also introduce an adversarial attack module before the generator. Such a black-box attacker can generate meaningful perturbations and adversarial examples throughout the training process. Our model has been tested on two public MRI medical image datasets considering different types and levels of perturbations, and each designed module is verified by the ablation study. The extensive experiments and comparison with SOTA methods have strongly demonstrated our model's superiority of refinement and robustness.

A novel few-shot learning framework for supervised diffeomorphic image registration network.

Chen K, Han H, Wei J, Zhang Y

pubmed logopapersJul 2 2025
Image registration is a key technique in image processing and analysis. Due to its high complexity, the traditional registration frameworks often fail to meet real-time demands in practice. To address the real-time demand, several deep learning networks for registration have been proposed, including the supervised and the unsupervised networks. Unsupervised networks rely on large amounts of training data to minimize specific loss functions, but the lack of physical information constraints results in the lower accuracy compared with the supervised networks. However, the supervised networks in medical image registration face two major challenges: physical mesh folding and the scarcity of labeled training data. To address these two challenges, we propose a novel few-shot learning framework for image registration. The framework contains two parts: random diffeomorphism generator (RDG) and a supervised few-shot learning network for image registration. By randomly generating a complex vector field, the RDG produces a series of diffeomorphism. With the help of diffeomorphism generated by RDG, one can use only a few image data (theoretically, one image data is enough) to generate a series of labels for training the supervised few-shot learning network. Concerning the elimination of the physical mesh folding phenomenon, in the proposed network, the loss function is only required to ensure the smoothness of deformation (no other control for mesh folding elimination is necessary). The experimental results indicate that the proposed method demonstrates superior performance in eliminating physical mesh folding when compared to other existing learning-based methods. Our code is available at this link https://github.com/weijunping111/RDG-TMI.git.

A Multi-Centric Anthropomorphic 3D CT Phantom-Based Benchmark Dataset for Harmonization

Mohammadreza Amirian, Michael Bach, Oscar Jimenez-del-Toro, Christoph Aberle, Roger Schaer, Vincent Andrearczyk, Jean-Félix Maestrati, Maria Martin Asiain, Kyriakos Flouris, Markus Obmann, Clarisse Dromain, Benoît Dufour, Pierre-Alexandre Alois Poletti, Hendrik von Tengg-Kobligk, Rolf Hügli, Martin Kretzschmar, Hatem Alkadhi, Ender Konukoglu, Henning Müller, Bram Stieltjes, Adrien Depeursinge

arxiv logopreprintJul 2 2025
Artificial intelligence (AI) has introduced numerous opportunities for human assistance and task automation in medicine. However, it suffers from poor generalization in the presence of shifts in the data distribution. In the context of AI-based computed tomography (CT) analysis, significant data distribution shifts can be caused by changes in scanner manufacturer, reconstruction technique or dose. AI harmonization techniques can address this problem by reducing distribution shifts caused by various acquisition settings. This paper presents an open-source benchmark dataset containing CT scans of an anthropomorphic phantom acquired with various scanners and settings, which purpose is to foster the development of AI harmonization techniques. Using a phantom allows fixing variations attributed to inter- and intra-patient variations. The dataset includes 1378 image series acquired with 13 scanners from 4 manufacturers across 8 institutions using a harmonized protocol as well as several acquisition doses. Additionally, we present a methodology, baseline results and open-source code to assess image- and feature-level stability and liver tissue classification, promoting the development of AI harmonization strategies.

3D MedDiffusion: A 3D Medical Latent Diffusion Model for Controllable and High-quality Medical Image Generation.

Wang H, Liu Z, Sun K, Wang X, Shen D, Cui Z

pubmed logopapersJul 2 2025
The generation of medical images presents significant challenges due to their high-resolution and three-dimensional nature. Existing methods often yield suboptimal performance in generating high-quality 3D medical images, and there is currently no universal generative framework for medical imaging. In this paper, we introduce a 3D Medical Latent Diffusion (3D MedDiffusion) model for controllable, high-quality 3D medical image generation. 3D MedDiffusion incorporates a novel, highly efficient Patch-Volume Autoencoder that compresses medical images into latent space through patch-wise encoding and recovers back into image space through volume-wise decoding. Additionally, we design a new noise estimator to capture both local details and global structural information during diffusion denoising process. 3D MedDiffusion can generate fine-detailed, high-resolution images (up to 512x512x512) and effectively adapt to various downstream tasks as it is trained on large-scale datasets covering CT and MRI modalities and different anatomical regions (from head to leg). Experimental results demonstrate that 3D MedDiffusion surpasses state-of-the-art methods in generative quality and exhibits strong generalizability across tasks such as sparse-view CT reconstruction, fast MRI reconstruction, and data augmentation for segmentationand classification. Source code and checkpoints are available at https://github.com/ShanghaiTech-IMPACT/3D-MedDiffusion.

PanTS: The Pancreatic Tumor Segmentation Dataset

Wenxuan Li, Xinze Zhou, Qi Chen, Tianyu Lin, Pedro R. A. S. Bassi, Szymon Plotka, Jaroslaw B. Cwikla, Xiaoxi Chen, Chen Ye, Zheren Zhu, Kai Ding, Heng Li, Kang Wang, Yang Yang, Yucheng Tang, Daguang Xu, Alan L. Yuille, Zongwei Zhou

arxiv logopreprintJul 2 2025
PanTS is a large-scale, multi-institutional dataset curated to advance research in pancreatic CT analysis. It contains 36,390 CT scans from 145 medical centers, with expert-validated, voxel-wise annotations of over 993,000 anatomical structures, covering pancreatic tumors, pancreas head, body, and tail, and 24 surrounding anatomical structures such as vascular/skeletal structures and abdominal/thoracic organs. Each scan includes metadata such as patient age, sex, diagnosis, contrast phase, in-plane spacing, slice thickness, etc. AI models trained on PanTS achieve significantly better performance in pancreatic tumor detection, localization, and segmentation compared to those trained on existing public datasets. Our analysis indicates that these gains are directly attributable to the 16x larger-scale tumor annotations and indirectly supported by the 24 additional surrounding anatomical structures. As the largest and most comprehensive resource of its kind, PanTS offers a new benchmark for developing and evaluating AI models in pancreatic CT analysis.

Habitat-Derived Radiomic Features of Planning Target Volume to Determine the Local Recurrence After Radiotherapy in Patients with Gliomas: A Feasibility Study.

Wang Y, Lin L, Hu Z, Wang H

pubmed logopapersJul 2 2025
To develop a machine learning-based predictive model for local recurrence after radiotherapy in patients with gliomas, with interpretability enhanced through SHapley Additive exPlanations (SHAP). We retrospectively enrolled 145 patients with pathologically confirmed gliomas who underwent brain radiotherapy (training: validation = 102:43). Physiological and structural magnetic resonance imaging (MRI) were used to define habitat regions. A total of 2153 radiomic features were extracted from each MRI sequence in each habitat region, respectively. Relief and Recursive Feature Elimination were used for radiomic feature selection. Support vector machine (SVM) and random forest models incorporating clinical and radiomic features were constructed for each habitat region. The SHAP method was used to explain the predictive model. In the training cohort and validation cohort, the Physiological_Habitat1 (e-THRIVE)_radiomic SVM model demonstrated the best AUC of 0.703 (95% CI 0.569-0.836) and 0.670 (95% CI 0.623-0.717) compared to the other radiomic models. The SHAP summary plot and SHAP force plot were used to interpret the best-performing Physiological_Habitat1 (e-THRIVE)_radiomic SVM model. Radiomic features derived from the Physiological_Habitat1 (e-THRIVE) were predictive of local recurrence in glioma patients following radiotherapy. The SHAP method provided insights into how the tumor microenvironment might influence the effectiveness of radiotherapy in postoperative gliomas.

Heterogeneity Habitats -Derived Radiomics of Gd-EOB-DTPA Enhanced MRI for Predicting Proliferation of Hepatocellular Carcinoma.

Sun S, Yu Y, Xiao S, He Q, Jiang Z, Fan Y

pubmed logopapersJul 2 2025
To construct and validate the optimal model for preoperative prediction of proliferative HCC based on habitat-derived radiomics features of Gd-EOB-DTPA-Enhanced MRI. A total of 187 patients who underwent Gd-EOB-DTPA-enhanced MRI before curative partial hepatectomy were divided into training (n=130, 50 proliferative and 80 nonproliferative HCC) and validation cohort (n=57, 25 proliferative and 32 nonproliferative HCC). Habitat subregion generation was performed using the Gaussian Mixture Model (GMM) clustering method to cluster all pixels to identify similar subregions within the tumor. Radiomic features were extracted from each tumor subregion in the arterial phase (AP) and hepatobiliary phase (HBP). Independent sample t tests, Pearson correlation coefficient, and Least Absolute Shrinkage and Selection Operator (LASSO) algorithm were performed to select the optimal features of subregions. After feature integration and selection, machine-learning classification models using the sci-kit-learn library were constructed. Receiver Operating Characteristic (ROC) curves and the DeLong test were performed to compare the identified performance for predicting proliferative HCC among these models. The optimal number of clusters was determined to be 3 based on the Silhouette coefficient. 20, 12, and 23 features were retained from the AP, HBP, and the combined AP and HBP habitat (subregions 1, 2, 3) radiomics features. Three models were constructed with these selected features in AP, HBP, and the combined AP and HBP habitat radiomics features. The ROC analysis and DeLong test show that the Naive Bayes model of AP and HBP habitat radiomics (AP-HBP-Hab-Rad) archived the best performance. Finally, the combined model using the Light Gradient Boosting Machine (LightGBM) algorithm, incorporating the AP-HBP-Hab-Rad, age, and AFP (Alpha-Fetoprotein), was identified as the optimal model for predicting proliferative HCC. For the training and validation cohort, the accuracy, sensitivity, specificity, and AUC were 0.923, 0.880, 0.950, 0.966 (95% CI: 0.937-0.994) and 0.825, 0.680, 0.937, 0.877 (95% CI: 0.786-0.969), respectively. In its validation cohort of the combined model, the AUC value was statistically higher than the other models (P<0.01). A combined model, including AP-HBP-Hab-Rad, serum AFP, and age using the LightGBM algorithm, can satisfactorily predict proliferative HCC preoperatively.

[AI-based applications in medical image computing].

Kepp T, Uzunova H, Ehrhardt J, Handels H

pubmed logopapersJul 2 2025
The processing of medical images plays a central role in modern diagnostics and therapy. Automated processing and analysis of medical images can efficiently accelerate clinical workflows and open new opportunities for improved patient care. However, the high variability, complexity, and varying quality of medical image data pose significant challenges. In recent years, the greatest progress in medical image analysis has been achieved through artificial intelligence (AI), particularly by using deep neural networks in the context of deep learning. These methods are successfully applied in medical image analysis, including segmentation, registration, and image synthesis.AI-based segmentation allows for the precise delineation of organs, tissues, or pathological changes. The application of AI-based image registration supports the accelerated creation of 3D planning models for complex surgeries by aligning relevant anatomical structures from different imaging modalities (e.g., CT, MRI, and PET) or time points. Generative AI methods can be used to generate additional image data for the improved training of AI models, thereby expanding the potential applications of deep learning methods in medicine. Examples from radiology, ophthalmology, dermatology, and surgery are described to illustrate their practical relevance and the potential of AI in image-based diagnostics and therapy.
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