This paper introduces 3D-QTRNet, a novel quantum-inspired neural network for volumetric medical image segmentation. Unlike conventional CNNs, which suffer from slow convergence and high complexity, and QINNs, which are limited to grayscale segmentation, our approach leverages qutrit encoding and tensor ring decomposition. These techniques improve segmentation accuracy, optimize memory usage, and accelerate model convergence. The proposed model demonstrates superior performance on the BRATS19 and Spleen datasets, outperforming state-of-the-art CNN and quantum models in terms of Dice similarity and segmentation precision. This work bridges the gap between quantum computing and medical imaging, offering a scalable solution for real-world applications.

Early detection is clinically crucial for the strategic handling of sarcopenia, yet the screening process, which includes assessments of muscle mass, strength, and function, remains complex and difficult to access. This study aims to develop a convolutional neural network model based on ultrasound images to simplify the diagnostic process and promote its accessibility. This study prospectively evaluated 357 participants (101 with sarcopenia and 256 without sarcopenia) for training, encompassing three types of data: muscle ultrasound images, clinical information, and laboratory information. Three monomodal models based on each data type were developed in the training cohort. The data type with the best diagnostic performance was selected to develop the bimodal and multimodal model by adding another one or two data types. Subsequently, the diagnostic performance of the above models was compared. The contribution ratios of different data types were further analyzed for the multimodal model. A sensitivity analysis was performed by excluding 86 cases with missing values and retaining 271 complete cases for robustness validation. By comprehensive comparison, we finally identified the optimal model (SARCO model) as the convenient solution. Moreover, the SARCO model underwent an external validation with 145 participants (68 with sarcopenia and 77 without sarcopenia) and a proof-of-concept validation with 82 participants (19 with sarcopenia and 63 without sarcopenia) from two other hospitals. The monomodal model based on ultrasound images achieved the highest area under the receiver operator characteristic curve (AUC) of 0.827 and F1-score of 0.738 among the three monomodal models. Sensitivity analysis on complete data further confirmed the superiority of the ultrasound images model (AUC: 0.851; F1-score: 0.698). The performance of the multimodal model demonstrated statistical differences compared to the best monomodal model (AUC: 0.845 vs 0.827; P=.02) as well as the two bimodal models based on ultrasound images+clinical information (AUC: 0.845 vs 0.826; P=.03) and ultrasound images+laboratory information (AUC: 0.845 vs 0.832, P=0.035). On the other hand, ultrasound images contributed the most evidence for diagnosing sarcopenia (0.787) and nonsarcopenia (0.823) in the multimodal models. Sensitivity analysis showed consistent performance trends, with ultrasound images remaining the dominant contributor (Shapley additive explanation values: 0.810 for sarcopenia and 0.795 for nonsarcopenia). After comprehensive clinical analysis, the monomodal model based on ultrasound images was identified as the SARCO model. Subsequently, the SARCO model achieved satisfactory prediction performance in the external validation and proof-of-concept validation, with AUCs of 0.801 and 0.757 and F1-scores of 0.727 and 0.666, respectively. All three types of data contributed to sarcopenia diagnosis, while ultrasound images played a dominant role in model decision-making. The SARCO model based on ultrasound images is potentially the most convenient solution for diagnosing sarcopenia. Chinese Clinical Trial Registry ChiCTR2300073651; https://www.chictr.org.cn/showproj.html?proj=199199.

The translation of imaging Mueller polarimetry to clinical practice is often hindered by large footprint and relatively slow acquisition speed of the existing instruments. Using polarization-sensitive camera as a detector may reduce instrument dimensions and allow data streaming at video rate. However, only the first three rows of a complete 4×4 Mueller matrix can be measured. To overcome this hurdle we developed a machine learning approach using sequential neural network algorithm for the reconstruction of missing elements of a Mueller matrix from the measured elements of the first three rows. The algorithm was trained and tested on the dataset of polarimetric images of various excised human tissues (uterine cervix, colon, skin, brain) acquired with two different imaging Mueller polarimeters operating in either reflection (wide-field imaging system) or transmission (microscope) configurations at different wavelengths of 550 nm and 385 nm, respectively. Reconstruction performance was evaluated using various error metrics, all of which confirmed low error values. The reconstruction of full images of the fourth row of Mueller matrix with GPU parallelization and increasing batch size took less than 50 milliseconds. It suggests that a machine learning approach with parallel processing of all image pixels combined with the partial Mueller polarimeter operating at video rate can effectively substitute for the complete Mueller polarimeter and produce accurate maps of depolarization, linear retardance and orientation of the optical axis of biological tissues, which can be used for medical diagnosis in clinical settings.

Dopamine transporter (DAT) SPECT is an effective tool for early Parkinson's disease (PD) detection and heavily hampered by attenuation. Attenuation correction (AC) is the most important correction among other corrections. Transfer learning (TL) with fine-tuning (FT) a pre-trained model has shown potential in enhancing deep learning (DL)-based AC methods. In this study, we investigate leveraging realistic Monte Carlo (MC) simulation data to create a pre-trained model for TL-based AC (TLAC) to improve AC performance for DAT SPECT. A total number of 200 digital brain phantoms with realistic ^99mTc-TRODAT-1 distribution was used to generate realistic noisy SPECT projections using MC SIMIND program and an analytical projector. One hundred real clinical ^99mTc-TRODAT-1 brain SPECT data were also retrospectively analyzed. All projections were reconstructed with and without CT-based attenuation correction (CTAC/NAC). A 3D conditional generative adversarial network (cGAN) was pre-trained using 200 pairs of simulated NAC and CTAC SPECT data. Subsequently, 8, 24, and 80 pairs of clinical NAC and CTAC DAT SPECT data were employed to fine-tune the pre-trained U-Net generator of cGAN (TLAC-MC). Comparisons were made against without FT (DLAC-MC), training on purely limited clinical data (DLAC-CLI), clinical data with data augmentation (DLAC-AUG), mixed MC and clinical data (DLAC-MIX), TL using analytical simulation data (TLAC-ANA), and Chang's AC (ChangAC). All datasets used for DL-based methods were split to 7/8 for training and 1/8 for validation, and a 1-/2-/5-fold cross-validation were applied to test all 100 clinical datasets, depending on the numbers of clinical data used in the training model. With 8 available clinical datasets, TLAC-MC achieved the best result in Normalized Mean Squared Error (NMSE) and Structural Similarity Index Measure (SSIM) (TLAC-MC; NMSE = 0.0143 ± 0.0082/SSIM = 0.9355 ± 0.0203), followed by DLAC-AUG, DLAC-MIX, TLAC-ANA, DLAC-CLI, DLAC-MC, ChangAC and NAC. Similar trends exist when increasing the number of clinical datasets. For TL-based AC methods, the fewer clinical datasets available for FT, the greater the improvement as compared to DLAC-CLI using the same number of clinical datasets for training. Joint histograms analysis and Bland-Altman plots of SBR results also demonstrate consistent findings. TLAC is feasible for DAT SPECT with a pre-trained model generated purely based on simulation data. TLAC-MC demonstrates superior performance over other DL-based AC methods, particularly when limited clinical datasets are available. The closer the pre-training data is to the target domain, the better the performance of the TLAC model.

This study investigates the hypothesis that chronic insomnia disorder (CID) is characterized by sex-specific changes in resting-state functional connectivity (rsFC), with certain molecular mechanisms potentially influencing CID's pathophysiology by altering rsFC in relevant networks. Utilizing a resting-state functional magnetic resonance imaging (fMRI) dataset of 395 participants, including 199 CID patients and 196 healthy controls, we examined sex-specific rsFC effects, particularly in the default mode network (DMN) and five insomnia-genetically vulnerable regions of interest (ROIs). By integrating gene expression data from the Allen Human Brain Atlas, we identified genes linked to these sex-specific rsFC alterations and conducted enrichment analysis to uncover underlying molecular mechanisms. Additionally, we simulated the impact of sex differences in rsFC with different sex compositions in our dataset and employed machine learning classifiers to distinguish CID from healthy controls based on sex-specific rsFC data. We identified both shared and sex-specific rsFC changes in the DMN and the five genetically vulnerable ROIs, with gene expression variations associated with these sex-specific connectivity differences. Enrichment analysis highlighted genes involved in synaptic signaling, ion channels, and immune function as potential contributors to CID pathophysiology through their influence on connectivity. Furthermore, our findings demonstrate that different sex compositions significantly affect study outcomes and higher diagnostic performance in sex-specific rsFC data than combined sex. This study uncovered both shared and sex-specific connectivity alterations in CID, providing molecular insights into its pathophysiology and suggesting considering sex differences in future fMRI-based diagnostic and treatment strategies.

A cortical hierarchical architecture is vital for encoding and integrating sensorimotor-to-cognitive information. However, whether this gradient structure is disrupted in end-stage renal disease (ESRD) patients and how this disruption provides valuable information for potential clinical symptoms remain unknown. We prospectively enrolled 77 ESRD patients and 48 healthy controls. Using resting-state functional magnetic resonance imaging, we studied ESRD-related hierarchical alterations. The Neurosynth platform and machine-learning models with 10-fold cross-validation were applied. ESRD patients had abnormal gradient metrics in core regions of the default mode network, sensorimotor network, and frontoparietal network. These changes correlated with creatinine, depression, and cognitive functions. A logistic regression classifier achieved a maximum performance of 84.8% accuracy and 0.901 area under the ROC curve (AUC). Our results highlight hierarchical imbalances in ESRD patients that correlate with diverse cognitive deficits, which may be used as potential neuroimaging markers for clinical symptoms.

<i>Objective</i>. Personalized transcranial magnetic stimulation (TMS) requires individualized head models that incorporate non-uniform conductivity to enable target-specific stimulation. Accurately estimating non-uniform conductivity in individualized head models remains a challenge due to the difficulty of obtaining precise ground truth data. To address this issue, we have developed a novel transfer learning-based approach for automatically estimating non-uniform conductivity in a human head model with limited data.<i>Approach</i>. The proposed method complements the limitations of the previous conductivity network (CondNet) and improves the conductivity estimation accuracy. This method generates a segmentation model from T1- and T2-weighted magnetic resonance images, which is then used for conductivity estimation via transfer learning. To enhance the model's representation capability, a Transformer was incorporated into the segmentation model, while the conductivity estimation model was designed using a combination of Attention Gates and Residual Connections, enabling efficient learning even with a small amount of data.<i>Main results</i>. The proposed method was evaluated using 1494 images, demonstrating a 2.4% improvement in segmentation accuracy and a 29.1% increase in conductivity estimation accuracy compared with CondNet. Furthermore, the proposed method achieved superior conductivity estimation accuracy even with only three training cases, outperforming CondNet, which was trained on an adequate number of cases. The conductivity maps generated by the proposed method yielded better results in brain electrical field simulations than CondNet.<i>Significance</i>. These findings demonstrate the high utility of the proposed method in brain electrical field simulations and suggest its potential applicability to other medical image analysis tasks and simulations.

Reliable methods for predicting pathological complete response (pCR) in non-small cell lung cancer (NSCLC) patients undergoing neoadjuvant chemoimmunotherapy are still under exploration. Although Fluorine-18 fluorodeoxyglucose-positron emission tomography/computed tomography (18F-FDG PET/CT) features reflect tumour response, their utility in predicting pCR remains controversial. This retrospective analysis included NSCLC patients who received neoadjuvant chemoimmunotherapy followed by 18F-FDG PET/CT imaging at Shanghai Pulmonary Hospital from October 2019 to August 2024. Eligible patients were randomly divided into training and validation cohort at a 7:3 ratio. Relevant 18F-FDG PET/CT features were evaluated as individual predictors and incorporated into 5 machine learning (ML) models. Model performance was assessed using the area under the receiver operating characteristic curve (AUC), and Shapley additive explanation was applied for model interpretation. A total of 205 patients were included, with 91 (44.4%) achieving pCR. Post-treatment tumour maximum standardized uptake value (SUVmax) demonstrated the highest predictive performance among individual predictors, achieving an AUC of 0.72 (95% CI 0.65-0.79), while ΔT SUVmax achieved an AUC of 0.65 (95% CI 0.53-0.77). The Light Gradient Boosting Machine algorithm outperformed other models and individual predictors, achieving an average AUC of 0.87 (95% CI 0.78-0.97) in training cohort and 0.83 (95% CI 0.72-0.94) in validation cohort. Shapley additive explanation analysis identified post-treatment tumour SUVmax and post-treatment nodal volume as key contributors. This ML models offer a non-invasive and effective approach for predicting pCR after neoadjuvant chemoimmunotherapy in NSCLC.

Deep learning-based medical image-to-mesh reconstruction has rapidly evolved, enabling the transformation of medical imaging data into three-dimensional mesh models that are critical in computational medicine and in silico trials for advancing our understanding of disease mechanisms, and diagnostic and therapeutic techniques in modern medicine. This survey systematically categorizes existing approaches into four main categories: template models, statistical models, generative models, and implicit models. Each category is analysed in detail, examining their methodological foundations, strengths, limitations, and applicability to different anatomical structures and imaging modalities. We provide an extensive evaluation of these methods across various anatomical applications, from cardiac imaging to neurological studies, supported by quantitative comparisons using standard metrics. Additionally, we compile and analyze major public datasets available for medical mesh reconstruction tasks and discuss commonly used evaluation metrics and loss functions. The survey identifies current challenges in the field, including requirements for topological correctness, geometric accuracy, and multi-modality integration. Finally, we present promising future research directions in this domain. This systematic review aims to serve as a comprehensive reference for researchers and practitioners in medical image analysis and computational medicine.

Cardiac Magnetic Resonance (CMR) imaging is a vital non-invasive tool for diagnosing heart diseases and evaluating cardiac health. However, the limited availability of large-scale, high-quality CMR datasets poses a major challenge to the effective application of artificial intelligence (AI) in this domain. Even the amount of unlabeled data and the health status it covers are difficult to meet the needs of model pretraining, which hinders the performance of AI models on downstream tasks. In this study, we present Cardiac Phenotype-Guided CMR Generation (CPGG), a novel approach for generating diverse CMR data that covers a wide spectrum of cardiac health status. The CPGG framework consists of two stages: in the first stage, a generative model is trained using cardiac phenotypes derived from CMR data; in the second stage, a masked autoregressive diffusion model, conditioned on these phenotypes, generates high-fidelity CMR cine sequences that capture both structural and functional features of the heart in a fine-grained manner. We synthesized a massive amount of CMR to expand the pretraining data. Experimental results show that CPGG generates high-quality synthetic CMR data, significantly improving performance on various downstream tasks, including diagnosis and cardiac phenotypes prediction. These gains are demonstrated across both public and private datasets, highlighting the effectiveness of our approach. Code is availabel at https://anonymous.4open.science/r/CPGG.