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Machine learning for Parkinson's disease: a comprehensive review of datasets, algorithms, and challenges.

Shokrpour S, MoghadamFarid A, Bazzaz Abkenar S, Haghi Kashani M, Akbari M, Sarvizadeh M

pubmed logopapersJul 1 2025
Parkinson's disease (PD) is a devastating neurological ailment affecting both mobility and cognitive function, posing considerable problems to the health of the elderly across the world. The absence of a conclusive treatment underscores the requirement to investigate cutting-edge diagnostic techniques to improve patient outcomes. Machine learning (ML) has the potential to revolutionize PD detection by applying large repositories of structured data to enhance diagnostic accuracy. 133 papers published between 2021 and April 2024 were reviewed using a systematic literature review (SLR) methodology, and subsequently classified into five categories: acoustic data, biomarkers, medical imaging, movement data, and multimodal datasets. This comprehensive analysis offers valuable insights into the applications of ML in PD diagnosis. Our SLR identifies the datasets and ML algorithms used for PD diagnosis, as well as their merits, limitations, and evaluation factors. We also discuss challenges, future directions, and outstanding issues.

Hybrid transfer learning and self-attention framework for robust MRI-based brain tumor classification.

Panigrahi S, Adhikary DRD, Pattanayak BK

pubmed logopapersJul 1 2025
Brain tumors are a significant contributor to cancer-related deaths worldwide. Accurate and prompt detection is crucial to reduce mortality rates and improve patient survival prospects. Magnetic Resonance Imaging (MRI) is crucial for diagnosis, but manual analysis is resource-intensive and error-prone, highlighting the need for robust Computer-Aided Diagnosis (CAD) systems. This paper proposes a novel hybrid model combining Transfer Learning (TL) and attention mechanisms to enhance brain tumor classification accuracy. Leveraging features from the pre-trained DenseNet201 Convolutional Neural Networks (CNN) model and integrating a Transformer-based architecture, our approach overcomes challenges like computational intensity, detail detection, and noise sensitivity. We also evaluated five additional pre-trained models-VGG19, InceptionV3, Xception, MobileNetV2, and ResNet50V2 and incorporated Multi-Head Self-Attention (MHSA) and Squeeze-and-Excitation Attention (SEA) blocks individually to improve feature representation. Using the Br35H dataset of 3,000 MRI images, our proposed DenseTransformer model achieved a consistent accuracy of 99.41%, demonstrating its reliability as a diagnostic tool. Statistical analysis using Z-test based on Cohen's Kappa Score, DeLong's test based on AUC Score and McNemar's test based on F1-score confirms the model's reliability. Additionally, Explainable AI (XAI) techniques like Gradient-weighted Class Activation Mapping (Grad-CAM) and Local Interpretable Model-agnostic Explanations (LIME) enhanced model transparency and interpretability. This study underscores the potential of hybrid Deep Learning (DL) models in advancing brain tumor diagnosis and improving patient outcomes.

Synergizing advanced algorithm of explainable artificial intelligence with hybrid model for enhanced brain tumor detection in healthcare.

Lamba K, Rani S, Shabaz M

pubmed logopapersJul 1 2025
Brain tumor causes life-threatening consequences due to which its timely detection and accurate classification are critical for determining appropriate treatment plans while focusing on the improved patient outcomes. However, conventional approaches of brain tumor diagnosis, such as Magnetic Resonance Imaging (MRI) and Computed Tomography (CT) scans, are often labor-intensive, prone to human error, and completely reliable on expertise of radiologists.Thus, the integration of advanced techniques such as Machine Learning (ML) and Deep Learning (DL) has brought revolution in the healthcare sector due to their supporting features or properties having ability to analyze medical images in recent years, demonstrating great potential for achieving accurate and improved outcomes but also resulted in a few drawbacks due to their black-box nature. As understanding reasoning behind their predictions is still a great challenge for the healthcare professionals and raised a great concern about their trustworthiness, interpretability and transparency in clinical settings. Thus, an advanced algorithm of explainable artificial intelligence (XAI) has been synergized with hybrid model comprising of DenseNet201 network for extracting the most important features based on the input Magnetic resonance imaging (MRI) data following supervised algorithm, support vector machine (SVM) to distinguish distinct types of brain scans. To overcome this, an explainable hybrid framework has been proposed that integrates DenseNet201 for deep feature extraction with a Support Vector Machine (SVM) classifier for robust binary classification. A region-adaptive preprocessing pipeline is used to enhance tumor visibility and feature clarity. To address the need for interpretability, multiple XAI techniques-Grad-CAM, Integrated Gradients (IG), and Layer-wise Relevance Propagation (LRP) have been incorporated. Our comparative evaluation shows that LRP achieves the highest performance across all explainability metrics, with 98.64% accuracy, 0.74 F1-score, and 0.78 IoU. The proposed model provides transparent and highly accurate diagnostic predictions, offering a reliable clinical decision support tool. It achieves 0.9801 accuracy, 0.9223 sensitivity, 0.9909 specificity, 0.9154 precision, and 0.9360 F1-score, demonstrating strong potential for real-world brain tumor diagnosis and personalized treatment strategies.

Generative AI for weakly supervised segmentation and downstream classification of brain tumors on MR images.

Yoo JJ, Namdar K, Wagner MW, Yeom KW, Nobre LF, Tabori U, Hawkins C, Ertl-Wagner BB, Khalvati F

pubmed logopapersJul 1 2025
Segmenting abnormalities is a leading problem in medical imaging. Using machine learning for segmentation generally requires manually annotated segmentations, demanding extensive time and resources from radiologists. We propose a weakly supervised approach that utilizes binary image-level labels, which are much simpler to acquire, rather than manual annotations to segment brain tumors on magnetic resonance images. The proposed method generates healthy variants of cancerous images for use as priors when training the segmentation model. However, using weakly supervised segmentations for downstream tasks such as classification can be challenging due to occasional unreliable segmentations. To address this, we propose using the generated non-cancerous variants to identify the most effective segmentations without requiring ground truths. Our proposed method generates segmentations that achieve Dice coefficients of 79.27% on the Multimodal Brain Tumor Segmentation (BraTS) 2020 dataset and 73.58% on an internal dataset of pediatric low-grade glioma (pLGG), which increase to 88.69% and 80.29%, respectively, when removing suboptimal segmentations identified using the proposed method. Using the segmentations for tumor classification results with Area Under the Characteristic Operating Curve (AUC) of 93.54% and 83.74% on the BraTS and pLGG datasets, respectively. These are comparable to using manual annotations which achieve AUCs of 95.80% and 83.03% on the BraTS and pLGG datasets, respectively.

Developments in MRI radiomics research for vascular cognitive impairment.

Chen X, Luo X, Chen L, Liu H, Yin X, Chen Z

pubmed logopapersJul 1 2025
Vascular cognitive impairment (VCI) is an umbrella term for diseases associated with cognitive decline induced by substantive brain damage following pathological changes in the cerebrovascular system. The primary clinical manifestations include behavioral abnormalities and diminished learning and memory cognitive functions. If the location and extent of brain injury are not identified early and therapeutic interventions are not promptly administered, it may lead to irreversible cognitive impairment. Therefore, the early diagnosis of VCI is crucial for its prevention and treatment. Prior to the onset of cognitive impairment in VCI, magnetic resonance imaging (MRI) radiomics can be utilized for early assessment and diagnosis, thereby guiding clinicians in providing precise treatment for patients, which holds significant potential for development. This article reviews the classification of VCI, the concept of radiomics, the application of MRI radiomics in VCI, and the limitations of radiomics in the context of advancements in its application within the central nervous system. CRITICAL RELEVANCE STATEMENT: This article explores how MRI radiomics can be used to detect VCI early, enhancing clinical radiology practice by offering a reliable method for prediction, diagnosis, and identification, which also promotes standardization in research and integration of disciplines. KEY POINTS: MRI radiomics can predict VCI early. MRI radiomics can diagnose VCI. MRI radiomics distinguishes VCI from Alzheimer's disease.

FPGA implementation of deep learning architecture for ankylosing spondylitis detection from MRI.

Kocaoğlu S

pubmed logopapersJul 1 2025
Ankylosing Spondylitis (AS), commonly known as Bechterew's disease, is a complex, potentially disabling disease that develops slowly over time and progresses to radiographic sacroiliitis. The etiology of this disease is poorly understood, making it difficult to diagnose. Therefore, treatment is also delayed. This study aims to diagnose AS with an automated system that classifies axial magnetic resonance imaging (MRI) sequences of AS patients. Recently, the application of deep learning neural networks (DLNNs) for MRI classification has become widespread. The implementation of this process on computer-independent end devices is advantageous due to its high computational power and low latency requirements. In this research, an MRI dataset containing images from 527 individuals was used. A deep learning architecture on a Field Programmable Gate Array (FPGA) card was implemented and analyzed. The results show that the classification performed on FPGA in AS diagnosis yields successful results close to the classification performed on CPU.

Prediction of axillary lymph node metastasis in triple negative breast cancer using MRI radiomics and clinical features.

Shen Y, Huang R, Zhang Y, Zhu J, Li Y

pubmed logopapersJul 1 2025
To develop and validate a machine learning-based prediction model to predict axillary lymph node (ALN) metastasis in triple negative breast cancer (TNBC) patients using magnetic resonance imaging (MRI) and clinical characteristics. This retrospective study included TNBC patients from the First Affiliated Hospital of Soochow University and Jiangsu Province Hospital (2016-2023). We analyzed clinical characteristics and radiomic features from T2-weighted MRI. Using LASSO regression for feature selection, we applied Logistic Regression (LR), Random Forest (RF), and Support Vector Machine (SVM) to build prediction models. A total of 163 patients, with a median age of 53 years (range: 24-73), were divided into a training group (n = 115) and a validation group (n = 48). Among them, 54 (33.13%) had ALN metastasis, and 109 (66.87%) were non-metastasis. Nottingham grade (P = 0.005), tumor size (P = 0.016) were significant difference between non-metastasis cases and metastasis cases. In the validation set, the LR-based combined model achieved the highest AUC (0.828, 95%CI: 0.706-0.950) with excellent sensitivity (0.813) and accuracy (0.812). Although the RF-based model had the highest AUC in the training set and the highest specificity (0.906) in the validation set, its performance was less consistent compared to the LR model. MRI-T2WI radiomic features predict ALN metastasis in TNBC, with integration into clinical models enhancing preoperative predictions and personalizing management.

Anterior cruciate ligament tear detection based on Res2Net modified by improved Lévy flight distribution.

Yang P, Liu Y, Liu F, Han M, Abdi Y

pubmed logopapersJul 1 2025
Anterior Cruciate Ligament (ACL) tears are common in sports and can provide noteworthy health issues. Therefore, accurately diagnosing of tears is important for the early and proper treatment. However, traditional diagnostic methods, such as clinical assessments and MRI, have limitations in terms of accuracy and efficiency. This study introduces a new diagnostic approach by combining of the deep learning architecture Res2Net with an improved version of the Lévy flight distribution (ILFD) to improve the detection of ACL tears in knee MRI images. The Res2Net model is known for its ability to extract important features and classify them effectively. By optimizing the model using the ILFD algorithm, the diagnostic efficiency is greatly improved. For validation of the proposed model's efficiency, it has been applied into two standard datasets including Stanford University Medical Center and Clinical Hospital Centre Rijeka. Comparative analysis with existing diagnostic methods, including 14 layers ResNet-14, Compact Parallel Deep Convolutional Neural Network (CPDCNN), Convolutional Neural Network (CNN), Generative Adversarial Network (GAN), and combined CNN and Modified Golden Search Algorithm (CNN/MGSA) shows that the suggested Res2Net/ILFD model performs better in various metrics, including precision, recall, accuracy, f1-score, and specificity, and Matthews correlation coefficient.

Cerebrovascular morphology: Insights into normal variations, aging effects and disease implications.

Deshpande A, Zhang LQ, Balu R, Yahyavi-Firouz-Abadi N, Badjatia N, Laksari K, Tahsili-Fahadan P

pubmed logopapersJul 1 2025
Cerebrovascular morphology plays a critical role in brain health, influencing cerebral blood flow (CBF) and contributing to the pathogenesis of various neurological diseases. This review examines the anatomical structure of the cerebrovascular network and its variations in healthy and diseased populations and highlights age-related changes and their implications in various neurological conditions. Normal variations, including the completeness and anatomical anomalies of the Circle of Willis and collateral circulation, are discussed in relation to their impact on CBF and susceptibility to ischemic events. Age-related changes in the cerebrovascular system, such as alterations in vessel geometry and density, are explored for their contributions to age-related neurological disorders, including Alzheimer's disease and vascular dementia. Advances in medical imaging and computational methods have enabled automatic quantitative assessment of cerebrovascular structures, facilitating the identification of pathological changes in both acute and chronic cerebrovascular disorders. Emerging technologies, including machine learning and computational fluid dynamics, offer new tools for predicting disease risk and patient outcomes based on vascular morphology. This review underscores the importance of understanding cerebrovascular remodeling for early diagnosis and the development of novel therapeutic approaches in brain diseases.

Machine learning-based model to predict long-term tumor control and additional interventions following pituitary surgery for Cushing's disease.

Shinya Y, Ghaith AK, Hong S, Erickson D, Bancos I, Herndon JS, Davidge-Pitts CJ, Nguyen RT, Bon Nieves A, Sáez Alegre M, Morshed RA, Pinheiro Neto CD, Peris Celda M, Pollock BE, Meyer FB, Atkinson JLD, Van Gompel JJ

pubmed logopapersJul 1 2025
In this study, the authors aimed to establish a supervised machine learning (ML) model based on multiple tree-based algorithms to predict long-term biochemical outcomes and intervention-free survival (IFS) after endonasal transsphenoidal surgery (ETS) in patients with Cushing's disease (CD). The medical records of patients who underwent ETS for CD between 2013 and 2023 were reviewed. Data were collected on the patient's baseline characteristics, intervention details, histopathology, surgical outcomes, and postoperative endocrine functions. The study's primary outcome was IFS, and the therapeutic outcomes were labeled as "under control" or "treatment failure," depending on whether additional therapeutic interventions after primary ETS were required. The decision tree and random forest classifiers were trained and tested to predict long-term IFS based on unseen data, using an 80/20 cohort split. Data from 150 patients, with a median follow-up period of 56 months, were extracted. In the cohort, 42 (28%) patients required additional intervention for persistent or recurrent CD. Consequently, the IFS rates following ETS alone were 83% at 3 years and 78% at 5 years. Multivariable Cox proportional hazards analysis demonstrated that a smaller tumor diameter that could be detected by MRI (hazard ratio 0.95, 95% CI 0.90-0.99; p = 0.047) was significantly associated with greater IFS. However, the lack of tumor detection on MRI was a poor predictor. The ML-based model using a decision tree model displayed 91% accuracy (95% CI 0.70-0.94, sensitivity 87.0%, specificity 89.0%) in predicting IFS in the unseen test dataset. Random forest analysis revealed that tumor size (mean minimal depth 1.67), Knosp grade (1.75), patient age (1.80), and BMI (1.99) were the four most significant predictors of long-term IFS. The ML algorithm could predict long-term postoperative endocrinological remission in CD with high accuracy, indicating that prognosis may vary not only with previously reported factors such as tumor size, Knosp grade, gross-total resection, and patient age but also with BMI. The decision tree flowchart could potentially stratify patients with CD before ETS, allowing for the selection of personalized treatment options and thereby assisting in determining treatment plans for these patients. This ML model may lead to a deeper understanding of the complex mechanisms of CD by uncovering patterns embedded within the data.
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