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High-performance Open-source AI for Breast Cancer Detection and Localization in MRI.

Hirsch L, Sutton EJ, Huang Y, Kayis B, Hughes M, Martinez D, Makse HA, Parra LC

pubmed logopapersJun 25 2025
<i>"Just Accepted" papers have undergone full peer review and have been accepted for publication in <i>Radiology: Artificial Intelligence</i>. This article will undergo copyediting, layout, and proof review before it is published in its final version. Please note that during production of the final copyedited article, errors may be discovered which could affect the content.</i> Purpose To develop and evaluate an open-source deep learning model for detection and localization of breast cancer on MRI. Materials and Methods In this retrospective study, a deep learning model for breast cancer detection and localization was trained on the largest breast MRI dataset to date. Data included all breast MRIs conducted at a tertiary cancer center in the United States between 2002 and 2019. The model was validated on sagittal MRIs from the primary site (<i>n</i> = 6,615 breasts). Generalizability was assessed by evaluating model performance on axial data from the primary site (<i>n</i> = 7,058 breasts) and a second clinical site (<i>n</i> = 1,840 breasts). Results The primary site dataset included 30,672 sagittal MRI examinations (52,598 breasts) from 9,986 female patients (mean [SD] age, 53 [11] years). The model achieved an area under the receiver operating characteristic curve (AUC) of 0.95 for detecting cancer in the primary site. At 90% specificity (5717/6353), model sensitivity was 83% (217/262), which was comparable to historical performance data for radiologists. The model generalized well to axial examinations, achieving an AUC of 0.92 on data from the same clinical site and 0.92 on data from a secondary site. The model accurately located the tumor in 88.5% (232/262) of sagittal images, 92.8% (272/293) of axial images from the primary site, and 87.7% (807/920) of secondary site axial images. Conclusion The model demonstrated state-of-the-art performance on breast cancer detection. Code and weights are openly available to stimulate further development and validation. ©RSNA, 2025.

Association of peripheral immune markers with brain age and dementia risk estimated using deep learning methods.

Huang X, Yuan S, Ling Y, Tan S, Bai Z, Xu Y, Shen S, Lyu J, Wang H

pubmed logopapersJun 25 2025
The peripheral immune system is essential for maintaining central nervous system homeostasis. This study investigates the effects of peripheral immune markers on accelerated brain aging and dementia using brain-predicted age difference based on neuroimaging. By leveraging data from the UK Biobank, Cox regression was used to explore the relationship between peripheral immune markers and dementia, and multivariate linear regression to assess associations between peripheral immune biomarkers and brain structure. Additionally, we established a brain age prediction model using Simple Fully Convolutional Network (SFCN) deep learning architecture. Analysis of the resulting brain-Predicted Age Difference (PAD) revealed relationships between accelerated brain aging, peripheral immune markers, and dementia. During the median follow-up period of 14.3 years, 4, 277 dementia cases were observed among 322, 761 participants. Both innate and adaptive immune markers correlated with dementia risk. NLR showed the strongest association with dementia risk (HR = 1.14; 95% CI: 1.11-1.18, P<0.001). Multivariate linear regression revealed significant associations between peripheral immune markers and brain regional structural indices. Utilizing the deep learning-based SFCN model, the estimated brain age of dementia subjects (MAE = 5.63, r2 = - 0.46, R = 0.22) was determined. PAD showed significant correlation with dementia risk and certain peripheral immune markers, particularly in individuals with positive brain age increment. This study employs brain age as a quantitative marker of accelerated brain aging to investigate its potential associations with peripheral immunity and dementia, highlighting the importance of early intervention targeting peripheral immune markers to delay brain aging and prevent dementia.

Novel Application of Connectomics to the Surgical Management of Pediatric Arteriovenous Malformations.

Syed SA, Al-Mufti F, Hanft SJ, Gandhi CD, Pisapia JM

pubmed logopapersJun 25 2025
Introduction The emergence of connectomics in neurosurgery has allowed for construction of detailed maps of white matter connections, incorporating both structural and functional connectivity patterns. The advantage of mapping cerebral vascular lesions to guide surgical approach shows great potential. We aim to identify the clinical utility of connectomics for the surgical treatment of pediatric arteriovenous malformations (AVM). Case Presentation We present two illustrative cases of the application of connectomics to the management of cerebral AVM in a 9-year-old and 8-year-old female. Using magnetic resonance anatomic and diffusion tensor imaging, a machine learning algorithm generated patient-specific representations of the corticospinal tract for the first patient, and the optic radiations for the second patient. The default mode network and language network were also examined for each patient. The imaging output served as an adjunct to guide operative decision making. It assisted with selection of the superior parietal lobule as the operative corridor for the first case. Furthermore, it alerted the surgeon to white matter tracts in close proximity to the AVM nidus during resection. Finally, it aided in risk versus benefit analysis regarding treatment approach, such as craniotomy for resection for the first patient versus radiosurgery for the second patient. Both patients had favorable neurologic outcomes at the available follow-up period. Conclusion Use of the software integrated well with clinical workflow. The output was used for planning and overlaid on the intraoperative neuro-navigation system. It improved visualization of eloquent regions, especially those networks not visible on standard anatomic imaging. Future studies will focus on expanding the cohort, conducting in pre- and post-operative connectomic analysis with correlation to clinical outcome measures, and incorporating functional magnetic resonance imaging.

ReCoGNet: Recurrent Context-Guided Network for 3D MRI Prostate Segmentation

Ahmad Mustafa, Reza Rastegar, Ghassan AlRegib

arxiv logopreprintJun 24 2025
Prostate gland segmentation from T2-weighted MRI is a critical yet challenging task in clinical prostate cancer assessment. While deep learning-based methods have significantly advanced automated segmentation, most conventional approaches-particularly 2D convolutional neural networks (CNNs)-fail to leverage inter-slice anatomical continuity, limiting their accuracy and robustness. Fully 3D models offer improved spatial coherence but require large amounts of annotated data, which is often impractical in clinical settings. To address these limitations, we propose a hybrid architecture that models MRI sequences as spatiotemporal data. Our method uses a deep, pretrained DeepLabV3 backbone to extract high-level semantic features from each MRI slice and a recurrent convolutional head, built with ConvLSTM layers, to integrate information across slices while preserving spatial structure. This combination enables context-aware segmentation with improved consistency, particularly in data-limited and noisy imaging conditions. We evaluate our method on the PROMISE12 benchmark under both clean and contrast-degraded test settings. Compared to state-of-the-art 2D and 3D segmentation models, our approach demonstrates superior performance in terms of precision, recall, Intersection over Union (IoU), and Dice Similarity Coefficient (DSC), highlighting its potential for robust clinical deployment.

A Multicentre Comparative Analysis of Radiomics, Deep-learning, and Fusion Models for Predicting Postpartum Hemorrhage.

Zhang W, Zhao X, Meng L, Lu L, Guo J, Cheng M, Tian H, Ren N, Yin J, Zhang X

pubmed logopapersJun 24 2025
This study compared the capabilities of two-dimensional (2D) and three-dimensional (3D) deep learning (DL), radiomics, and fusion models to predict postpartum hemorrhage (PPH), using sagittal T2-weighted MRI images. This retrospective study successively included 581 pregnant women suspected of placenta accreta spectrum (PAS) disorders who underwent placental MRI assessment between May 2018 and June 2024 in two hospitals. Clinical information was collected, and MRI images were analyzed by two experienced radiologists. The study cohort was divided into training (hospital 1, n=470) and validation (hospital 2, n=160) sets. Radiomics features were extracted after image segmentation to develop the radiomics model, 2D and 3D DL models were developed, and two fusion strategies (early and late fusion) were used to construct the fusion models. ROC curves, AUC, sensitivity, specificity, calibration curves, and decision curve analysis were used to evaluate the models' performance. The late-fusion model (DLRad_LF) yielded the highest performance, with AUCs of 0.955 (95% CI: 0.935-0.974) and 0.898 (95% CI: 0.848-0.949) in the training and validation sets, respectively. In the validation set, the AUC of the 3D DL model was significantly larger than those of the radiomics (AUC=0.676, P<0.001) and 2D DL (AUC=0.752, P<0.001) models. Subgroup analysis found that placenta previa and PAS did not impact the models' performance significantly. The DLRad_LF model could predict PPH reasonably accurately based on sagittal T2-weighted MRI images.

Advances and Integrations of Computer-Assisted Planning, Artificial Intelligence, and Predictive Modeling Tools for Laser Interstitial Thermal Therapy in Neurosurgical Oncology.

Warman A, Moorthy D, Gensler R, Horowtiz MA, Ellis J, Tomasovic L, Srinivasan E, Ahmed K, Azad TD, Anderson WS, Rincon-Torroella J, Bettegowda C

pubmed logopapersJun 24 2025
Laser interstitial thermal therapy (LiTT) has emerged as a minimally invasive, MRI-guided treatment of brain tumors that are otherwise considered inoperable because of their location or the patient's poor surgical candidacy. By directing thermal energy at neoplastic lesions while minimizing damage to surrounding healthy tissue, LiTT offers promising therapeutic outcomes for both newly diagnosed and recurrent tumors. However, challenges such as postprocedural edema, unpredictable heat diffusion near blood vessels and ventricles in real time underscore the need for improved planning and monitoring. Incorporating artificial intelligence (AI) presents a viable solution to many of these obstacles. AI has already demonstrated effectiveness in optimizing surgical trajectories, predicting seizure-free outcomes in epilepsy cases, and generating heat distribution maps to guide real-time ablation. This technology could be similarly deployed in neurosurgical oncology to identify patients most likely to benefit from LiTT, refine trajectory planning, and predict tissue-specific heat responses. Despite promising initial studies, further research is needed to establish the robust data sets and clinical trials necessary to develop and validate AI-driven LiTT protocols. Such advancements have the potential to bolster LiTT's efficacy, minimize complications, and ultimately transform the neurosurgical management of primary and metastatic brain tumors.

Systematic Review of Pituitary Gland and Pituitary Adenoma Automatic Segmentation Techniques in Magnetic Resonance Imaging

Mubaraq Yakubu, Navodini Wijethilake, Jonathan Shapey, Andrew King, Alexander Hammers

arxiv logopreprintJun 24 2025
Purpose: Accurate segmentation of both the pituitary gland and adenomas from magnetic resonance imaging (MRI) is essential for diagnosis and treatment of pituitary adenomas. This systematic review evaluates automatic segmentation methods for improving the accuracy and efficiency of MRI-based segmentation of pituitary adenomas and the gland itself. Methods: We reviewed 34 studies that employed automatic and semi-automatic segmentation methods. We extracted and synthesized data on segmentation techniques and performance metrics (such as Dice overlap scores). Results: The majority of reviewed studies utilized deep learning approaches, with U-Net-based models being the most prevalent. Automatic methods yielded Dice scores of 0.19--89.00\% for pituitary gland and 4.60--96.41\% for adenoma segmentation. Semi-automatic methods reported 80.00--92.10\% for pituitary gland and 75.90--88.36\% for adenoma segmentation. Conclusion: Most studies did not report important metrics such as MR field strength, age and adenoma size. Automated segmentation techniques such as U-Net-based models show promise, especially for adenoma segmentation, but further improvements are needed to achieve consistently good performance in small structures like the normal pituitary gland. Continued innovation and larger, diverse datasets are likely critical to enhancing clinical applicability.

Preoperative Assessment of Lymph Node Metastasis in Rectal Cancer Using Deep Learning: Investigating the Utility of Various MRI Sequences.

Zhao J, Zheng P, Xu T, Feng Q, Liu S, Hao Y, Wang M, Zhang C, Xu J

pubmed logopapersJun 24 2025
This study aimed to develop a deep learning (DL) model based on three-dimensional multi-parametric magnetic resonance imaging (mpMRI) for preoperative assessment of lymph node metastasis (LNM) in rectal cancer (RC) and to investigate the contribution of different MRI sequences. A total of 613 eligible patients with RC from four medical centres who underwent preoperative mpMRI were retrospectively enrolled and randomly assigned to training (n = 372), validation (n = 106), internal test (n = 88) and external test (n = 47) cohorts. A multi-parametric multi-scale EfficientNet (MMENet) was designed to effectively extract LNM-related features from mpMR for preoperative LNM assessment. Its performance was compared with other DL models and radiologists using metrics of area under the receiver operating curve (AUC), accuracy (ACC), sensitivity, specificity and average precision with 95% confidence interval (CI). To investigate the utility of various MRI sequences, the performances of the mono-parametric model and the MMENet with different sequences combinations as input were compared. The MMENet using a combination of T2WI, DWI and DCE sequence achieved an AUC of 0.808 (95% CI 0.720-0.897) with an ACC of 71.6% (95% CI 62.3-81.0) in the internal test cohort and an AUC of 0.782 (95% CI 0.636-0.925) with an ACC of 76.6% (95% CI 64.6-88.6) in the external test cohort, outperforming the mono-parametric model, the MMENet with other sequences combinations and the radiologists. The MMENet, leveraging a combination of T2WI, DWI and DCE sequences, can accurately assess LNM in RC preoperatively and holds great promise for automated evaluation of LNM in clinical practice.

From Faster Frames to Flawless Focus: Deep Learning HASTE in Postoperative Single Sequence MRI.

Hosse C, Fehrenbach U, Pivetta F, Malinka T, Wagner M, Walter-Rittel T, Gebauer B, Kolck J, Geisel D

pubmed logopapersJun 24 2025
This study evaluates the feasibility of a novel deep learning-accelerated half-fourier single-shot turbo spin-echo sequence (HASTE-DL) compared to the conventional HASTE sequence (HASTE<sub>S</sub>) in postoperative single-sequence MRI for the detection of fluid collections following abdominal surgery. As small fluid collections are difficult to visualize using other techniques, HASTE-DL may offer particular advantages in this clinical context. A retrospective analysis was conducted on 76 patients (mean age 65±11.69 years) who underwent abdominal MRI for suspected septic foci following abdominal surgery. Imaging was performed using 3-T MRI scanners, and both sequences were analyzed in terms of image quality, contrast, sharpness, and artifact presence. Quantitative assessments focused on fluid collection detectability, while qualitative assessments evaluated visualization of critical structures. Inter-reader agreement was measured using Cohen's kappa coefficient, and statistical significance was determined with the Mann-Whitney U test. HASTE-DL achieved a 46% reduction in scan time compared to HASTE<sub>S</sub>, while significantly improving overall image quality (p<0.001), contrast (p<0.001), and sharpness (p<0.001). The inter-reader agreement for HASTE-DL was excellent (κ=0.960), with perfect agreement on overall image quality and fluid collection detection (κ=1.0). Fluid detectability and characterization scores were higher for HASTE-DL, and visualization of critical structures was significantly enhanced (p<0.001). No relevant artifacts were observed in either sequence. HASTE-DL offers superior image quality, improved visualization of critical structures, such as drainages, vessels, bile and pancreatic ducts, and reduced acquisition time, making it an effective alternative to the standard HASTE sequence, and a promising complementary tool in the postoperative imaging workflow.

Multimodal deep learning for predicting neoadjuvant treatment outcomes in breast cancer: a systematic review.

Krasniqi E, Filomeno L, Arcuri T, Ferretti G, Gasparro S, Fulvi A, Roselli A, D'Onofrio L, Pizzuti L, Barba M, Maugeri-Saccà M, Botti C, Graziano F, Puccica I, Cappelli S, Pelle F, Cavicchi F, Villanucci A, Paris I, Calabrò F, Rea S, Costantini M, Perracchio L, Sanguineti G, Takanen S, Marucci L, Greco L, Kayal R, Moscetti L, Marchesini E, Calonaci N, Blandino G, Caravagna G, Vici P

pubmed logopapersJun 23 2025
Pathological complete response (pCR) to neoadjuvant systemic therapy (NAST) is an established prognostic marker in breast cancer (BC). Multimodal deep learning (DL), integrating diverse data sources (radiology, pathology, omics, clinical), holds promise for improving pCR prediction accuracy. This systematic review synthesizes evidence on multimodal DL for pCR prediction and compares its performance against unimodal DL. Following PRISMA, we searched PubMed, Embase, and Web of Science (January 2015-April 2025) for studies applying DL to predict pCR in BC patients receiving NAST, using data from radiology, digital pathology (DP), multi-omics, and/or clinical records, and reporting AUC. Data on study design, DL architectures, and performance (AUC) were extracted. A narrative synthesis was conducted due to heterogeneity. Fifty-one studies, mostly retrospective (90.2%, median cohort 281), were included. Magnetic resonance imaging and DP were common primary modalities. Multimodal approaches were used in 52.9% of studies, often combining imaging with clinical data. Convolutional neural networks were the dominant architecture (88.2%). Longitudinal imaging improved prediction over baseline-only (median AUC 0.91 vs. 0.82). Overall, the median AUC across studies was 0.88, with 35.3% achieving AUC ≥ 0.90. Multimodal models showed a modest but consistent improvement over unimodal approaches (median AUC 0.88 vs. 0.83). Omics and clinical text were rarely primary DL inputs. DL models demonstrate promising accuracy for pCR prediction, especially when integrating multiple modalities and longitudinal imaging. However, significant methodological heterogeneity, reliance on retrospective data, and limited external validation hinder clinical translation. Future research should prioritize prospective validation, integration underutilized data (multi-omics, clinical), and explainable AI to advance DL predictors to the clinical setting.
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