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MAUP: Training-free Multi-center Adaptive Uncertainty-aware Prompting for Cross-domain Few-shot Medical Image Segmentation

Yazhou Zhu, Haofeng Zhang

arxiv logopreprintAug 5 2025
Cross-domain Few-shot Medical Image Segmentation (CD-FSMIS) is a potential solution for segmenting medical images with limited annotation using knowledge from other domains. The significant performance of current CD-FSMIS models relies on the heavily training procedure over other source medical domains, which degrades the universality and ease of model deployment. With the development of large visual models of natural images, we propose a training-free CD-FSMIS model that introduces the Multi-center Adaptive Uncertainty-aware Prompting (MAUP) strategy for adapting the foundation model Segment Anything Model (SAM), which is trained with natural images, into the CD-FSMIS task. To be specific, MAUP consists of three key innovations: (1) K-means clustering based multi-center prompts generation for comprehensive spatial coverage, (2) uncertainty-aware prompts selection that focuses on the challenging regions, and (3) adaptive prompt optimization that can dynamically adjust according to the target region complexity. With the pre-trained DINOv2 feature encoder, MAUP achieves precise segmentation results across three medical datasets without any additional training compared with several conventional CD-FSMIS models and training-free FSMIS model. The source code is available at: https://github.com/YazhouZhu19/MAUP.

Recurrent inference machine for medical image registration.

Zhang Y, Zhao Y, Xue H, Kellman P, Klein S, Tao Q

pubmed logopapersAug 5 2025
Image registration is essential for medical image applications where alignment of voxels across multiple images is needed for qualitative or quantitative analysis. With recent advances in deep neural networks and parallel computing, deep learning-based medical image registration methods become competitive with their flexible modeling and fast inference capabilities. However, compared to traditional optimization-based registration methods, the speed advantage may come at the cost of registration performance at inference time. Besides, deep neural networks ideally demand large training datasets while optimization-based methods are training-free. To improve registration accuracy and data efficiency, we propose a novel image registration method, termed Recurrent Inference Image Registration (RIIR) network. RIIR is formulated as a meta-learning solver for the registration problem in an iterative manner. RIIR addresses the accuracy and data efficiency issues, by learning the update rule of optimization, with implicit regularization combined with explicit gradient input. We extensively evaluated RIIR on brain MRI, lung CT, and quantitative cardiac MRI datasets, in terms of both registration accuracy and training data efficiency. Our experiments showed that RIIR outperformed a range of deep learning-based methods, even with only 5% of the training data, demonstrating high data efficiency. Key findings from our ablation studies highlighted the important added value of the hidden states introduced in the recurrent inference framework for meta-learning. Our proposed RIIR offers a highly data-efficient framework for deep learning-based medical image registration.

The REgistry of Flow and Perfusion Imaging for Artificial INtelligEnce with PET(REFINE PET): Rationale and Design.

Ramirez G, Lemley M, Shanbhag A, Kwiecinski J, Miller RJH, Kavanagh PB, Liang JX, Dey D, Slipczuk L, Travin MI, Alexanderson E, Carvajal-Juarez I, Packard RRS, Al-Mallah M, Einstein AJ, Feher A, Acampa W, Knight S, Le VT, Mason S, Sanghani R, Wopperer S, Chareonthaitawee P, Buechel RR, Rosamond TL, deKemp RA, Berman DS, Di Carli MF, Slomka PJ

pubmed logopapersAug 5 2025
The REgistry of Flow and Perfusion Imaging for Artificial Intelligence with PET (REFINE PET) was established to collect multicenter PET and associated computed tomography (CT) images, together with clinical data and outcomes, into a comprehensive research resource. REFINE PET will enable validation and development of both standard and novel cardiac PET/CT processing methods. REFINE PET is a multicenter, international registry that contains both clinical and imaging data. The PET scans were processed using QPET software (Cedars-Sinai Medical Center, Los Angeles, CA), while the CT scans were processed using deep learning (DL) to detect coronary artery calcium (CAC). Patients were followed up for the occurrence of major adverse cardiovascular events (MACE), which include death, myocardial infarction, unstable angina, and late revascularization (>90 days from PET). The REFINE PET registry currently contains data for 35,588 patients from 14 sites, with additional patient data and sites anticipated. Comprehensive clinical data (including demographics, medical history, and stress test results) were integrated with more than 2200 imaging variables across 42 categories. The registry is poised to address a broad range of clinical questions, supported by correlating invasive angiography (within 6 months of MPI) in 5972 patients and a total of 9252 major adverse cardiovascular events during a median follow-up of 4.2 years. The REFINE PET registry leverages the integration of clinical, multimodality imaging, and novel quantitative and AI tools to advance the role of PET/CT MPI in diagnosis and risk stratification.

Imaging in clinical trials of rheumatoid arthritis: where are we in 2025?

Østergaard M, Rolland MAJ, Terslev L

pubmed logopapersAug 5 2025
Accurate detection and assessment of inflammatory activity is crucial not only for diagnosing patients with rheumatoid arthritis but also for effective monitoring of treatment effect. Ultrasound and magnetic resonance imaging (MRI) have both been shown to be truthful, reproducible, and sensitive to change for inflammation in joints and tendon sheaths and have validated scoring systems, which altogether allow them to be used as outcome measurement instruments in clinical trials. Furthermore, MRI also allows sensitive and discriminative assessment of structural damage progression in RA, also with validated outcome measures. Other relevant imaging techniques, including the use of artificial intelligence, pose interesting possibilities for future clinical trials and will be briefly addressed in this review article.

Are Vision-xLSTM-embedded U-Nets better at segmenting medical images?

Dutta P, Bose S, Roy SK, Mitra S

pubmed logopapersAug 5 2025
The development of efficient segmentation strategies for medical images has evolved from its initial dependence on Convolutional Neural Networks (CNNs) to the current investigation of hybrid models that combine CNNs with Vision Transformers (ViTs). There is an increasing focus on developing architectures that are both high-performing and computationally efficient, capable of being deployed on remote systems with limited resources. Although transformers can capture global dependencies in the input space, they face challenges from the corresponding high computational and storage expenses involved. The objective of this research is to propose that Vision Extended Long Short-Term Memory (Vision-xLSTM) forms an appropriate backbone for medical image segmentation, offering excellent performance with reduced computational costs. This study investigates the integration of CNNs with Vision-xLSTM by introducing the novel U-VixLSTM. The Vision-xLSTM blocks capture the temporal and global relationships within the patches extracted from the CNN feature maps. The convolutional feature reconstruction path upsamples the output volume from the Vision-xLSTM blocks to produce the segmentation output. The U-VixLSTM exhibits superior performance compared to the state-of-the-art networks in the publicly available Synapse, ISIC and ACDC datasets. The findings suggest that U-VixLSTM is a promising alternative to ViTs for medical image segmentation, delivering effective performance without substantial computational burden. This makes it feasible for deployment in healthcare environments with limited resources for faster diagnosis. Code provided: https://github.com/duttapallabi2907/U-VixLSTM.

Controllable Mask Diffusion Model for medical annotation synthesis with semantic information extraction.

Heo C, Jung J

pubmed logopapersAug 5 2025
Medical segmentation, a prominent task in medical image analysis utilizing artificial intelligence, plays a crucial role in computer-aided diagnosis and depends heavily on the quality of the training data. However, the availability of sufficient data is constrained by strict privacy regulations associated with medical data. To mitigate this issue, research on data augmentation has gained significant attention. Medical segmentation tasks require paired datasets consisting of medical images and annotation images, also known as mask images, which represent lesion areas or radiological information within the medical images. Consequently, it is essential to apply data augmentation to both image types. This study proposes a Controllable Mask Diffusion Model, a novel approach capable of controlling and generating new masks. This model leverages the binary structure of the mask to extract semantic information, namely, the mask's size, location, and count, which is then applied as multi-conditional input to a diffusion model via a regressor. Through the regressor, newly generated masks conform to the input semantic information, thereby enabling input-driven controllable generation. Additionally, a technique that analyzes correlation within semantic information was devised for large-scale data synthesis. The generative capacity of the proposed model was evaluated against real datasets, and the model's ability to control and generate new masks based on previously unseen semantic information was confirmed. Furthermore, the practical applicability of the model was demonstrated by augmenting the data with the generated data, applying it to segmentation tasks, and comparing the performance with and without augmentation. Additionally, experiments were conducted on single-label and multi-label masks, yielding superior results for both types. This demonstrates the potential applicability of this study to various areas within the medical field.

Augmenting Continual Learning of Diseases with LLM-Generated Visual Concepts

Jiantao Tan, Peixian Ma, Kanghao Chen, Zhiming Dai, Ruixuan Wang

arxiv logopreprintAug 5 2025
Continual learning is essential for medical image classification systems to adapt to dynamically evolving clinical environments. The integration of multimodal information can significantly enhance continual learning of image classes. However, while existing approaches do utilize textual modality information, they solely rely on simplistic templates with a class name, thereby neglecting richer semantic information. To address these limitations, we propose a novel framework that harnesses visual concepts generated by large language models (LLMs) as discriminative semantic guidance. Our method dynamically constructs a visual concept pool with a similarity-based filtering mechanism to prevent redundancy. Then, to integrate the concepts into the continual learning process, we employ a cross-modal image-concept attention module, coupled with an attention loss. Through attention, the module can leverage the semantic knowledge from relevant visual concepts and produce class-representative fused features for classification. Experiments on medical and natural image datasets show our method achieves state-of-the-art performance, demonstrating the effectiveness and superiority of our method. We will release the code publicly.

GRASPing Anatomy to Improve Pathology Segmentation

Keyi Li, Alexander Jaus, Jens Kleesiek, Rainer Stiefelhagen

arxiv logopreprintAug 5 2025
Radiologists rely on anatomical understanding to accurately delineate pathologies, yet most current deep learning approaches use pure pattern recognition and ignore the anatomical context in which pathologies develop. To narrow this gap, we introduce GRASP (Guided Representation Alignment for the Segmentation of Pathologies), a modular plug-and-play framework that enhances pathology segmentation models by leveraging existing anatomy segmentation models through pseudolabel integration and feature alignment. Unlike previous approaches that obtain anatomical knowledge via auxiliary training, GRASP integrates into standard pathology optimization regimes without retraining anatomical components. We evaluate GRASP on two PET/CT datasets, conduct systematic ablation studies, and investigate the framework's inner workings. We find that GRASP consistently achieves top rankings across multiple evaluation metrics and diverse architectures. The framework's dual anatomy injection strategy, combining anatomical pseudo-labels as input channels with transformer-guided anatomical feature fusion, effectively incorporates anatomical context.

MedCAL-Bench: A Comprehensive Benchmark on Cold-Start Active Learning with Foundation Models for Medical Image Analysis

Ning Zhu, Xiaochuan Ma, Shaoting Zhang, Guotai Wang

arxiv logopreprintAug 5 2025
Cold-Start Active Learning (CSAL) aims to select informative samples for annotation without prior knowledge, which is important for improving annotation efficiency and model performance under a limited annotation budget in medical image analysis. Most existing CSAL methods rely on Self-Supervised Learning (SSL) on the target dataset for feature extraction, which is inefficient and limited by insufficient feature representation. Recently, pre-trained Foundation Models (FMs) have shown powerful feature extraction ability with a potential for better CSAL. However, this paradigm has been rarely investigated, with a lack of benchmarks for comparison of FMs in CSAL tasks. To this end, we propose MedCAL-Bench, the first systematic FM-based CSAL benchmark for medical image analysis. We evaluate 14 FMs and 7 CSAL strategies across 7 datasets under different annotation budgets, covering classification and segmentation tasks from diverse medical modalities. It is also the first CSAL benchmark that evaluates both the feature extraction and sample selection stages. Our experimental results reveal that: 1) Most FMs are effective feature extractors for CSAL, with DINO family performing the best in segmentation; 2) The performance differences of these FMs are large in segmentation tasks, while small for classification; 3) Different sample selection strategies should be considered in CSAL on different datasets, with Active Learning by Processing Surprisal (ALPS) performing the best in segmentation while RepDiv leading for classification. The code is available at https://github.com/HiLab-git/MedCAL-Bench.

A Survey of Medical Point Cloud Shape Learning: Registration, Reconstruction and Variation

Tongxu Zhang, Zhiming Liang, Bei Wang

arxiv logopreprintAug 5 2025
Point clouds have become an increasingly important representation for 3D medical imaging, offering a compact, surface-preserving alternative to traditional voxel or mesh-based approaches. Recent advances in deep learning have enabled rapid progress in extracting, modeling, and analyzing anatomical shapes directly from point cloud data. This paper provides a comprehensive and systematic survey of learning-based shape analysis for medical point clouds, focusing on three fundamental tasks: registration, reconstruction, and variation modeling. We review recent literature from 2021 to 2025, summarize representative methods, datasets, and evaluation metrics, and highlight clinical applications and unique challenges in the medical domain. Key trends include the integration of hybrid representations, large-scale self-supervised models, and generative techniques. We also discuss current limitations, such as data scarcity, inter-patient variability, and the need for interpretable and robust solutions for clinical deployment. Finally, future directions are outlined for advancing point cloud-based shape learning in medical imaging.
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