Machine learning models have utilized semantic features, deep features, or both to assess lung nodule malignancy. However, their reliance on manual annotation during inference, limited interpretability, and sensitivity to imaging variations hinder their application in real-world clinical settings. Thus, this research aims to integrate semantic features derived from radiologists' assessments of nodules, guiding the model to learn clinically relevant, robust, and explainable imaging features for predicting lung cancer. We obtained 938 low-dose CT scans from the National Lung Screening Trial (NLST) with 1,246 nodules and semantic features. Additionally, the Lung Image Database Consortium dataset contains 1,018 CT scans, with 2,625 lesions annotated for nodule characteristics. Three external datasets were obtained from UCLA Health, the LUNGx Challenge, and the Duke Lung Cancer Screening. We fine-tuned a pretrained Contrastive Language-Image Pretraining (CLIP) model with a parameter-efficient fine-tuning approach to align imaging and semantic text features and predict the one-year lung cancer diagnosis. Our model outperformed state-of-the-art (SOTA) models in the NLST test set with an AUROC of 0.901 and AUPRC of 0.776. It also showed robust results in external datasets. Using CLIP, we also obtained predictions on semantic features through zero-shot inference, such as nodule margin (AUROC: 0.812), nodule consistency (0.812), and pleural attachment (0.840). Our approach surpasses the SOTA models in predicting lung cancer across datasets collected from diverse clinical settings, providing explainable outputs, aiding clinicians in comprehending the underlying meaning of model predictions. This approach also prevents the model from learning shortcuts and generalizes across clinical settings. The code is available at https://github.com/luotingzhuang/CLIP_nodule.

The use of diverse modalities, such as omics, medical images, and clinical data can not only improve the performance of prognostic models but also deepen an understanding of disease mechanisms and facilitate the development of novel treatment approaches. However, medical data are complex, often incomplete, and contains missing modalities, making effective handling its crucial for training multimodal models. We introduce impuTMAE, a novel transformer-based end-to-end approach with an efficient multimodal pre-training strategy. It learns inter- and intra-modal interactions while simultaneously imputing missing modalities by reconstructing masked patches. Our model is pre-trained on heterogeneous, incomplete data and fine-tuned for glioma survival prediction using TCGA-GBM/LGG and BraTS datasets, integrating five modalities: genetic (DNAm, RNA-seq), imaging (MRI, WSI), and clinical data. By addressing missing data during pre-training and enabling efficient resource utilization, impuTMAE surpasses prior multimodal approaches, achieving state-of-the-art performance in glioma patient survival prediction. Our code is available at https://github.com/maryjis/mtcp

Cardiomyopathy is a life-threatening condition associated with heart failure, arrhythmias, thromboembolism, and sudden cardiac death, posing a significant contribution to worldwide morbidity and mortality. Cardiomegaly, which is usually the initial radiologic sign, may reflect the progression of an underlying heart disease or an underlying undiagnosed cardiac condition. Chest radiography is the most frequently used imaging method for detecting heart enlargement. Prompt and accurate diagnosis is essential for prompt intervention and appropriate treatment planning to prevent disease progression and improve patient outcomes. The current work provides a new methodology for automated cardiomegaly diagnosis using X-ray images through the fusion of Block-Matching and 3D Filtering (BM3D) within the Ensemble Hilbert-Huang Transform (EHHT), convolutional neural networks like Pretrained VGG16, ResNet50, InceptionV3, DenseNet169, and Spiking Neural Networks (SNN), and Classifiers. BM3D is first used for image edge retention and noise reduction, and then EHHT is applied to obtain informative features from X-ray images. The features that have been extracted are then processed using an SNN that simulates neural processes at a biological level and offers a biologically possible classification solution. Gradient-weighted Class Activation Mapping (GradCAM) emphasized important areas that affected model predictions. The SNN performed the best among all the models tested, with 97.6 % accuracy, 96.3 % sensitivity, and 98.2 % specificity. These findings show the SNN's high potential for facilitating accurate and efficient cardiomyopathy diagnosis, leading to enhanced clinical decision-making and patient outcomes.

BackgroundInterstitial lung disease (ILD) encompasses diverse pulmonary disorders with varied prognoses. Current pathological diagnoses suffer from inter-observer variability,necessitating more standardized approaches. We developed an ensemble model AI for cryobiopsy, CRAI, an artificial intelligence model to analyze transbronchial lung cryobiopsy (TBLC) specimens and predict patient outcomes. MethodsWe developed an explainable AI model, CRAI, to analyze TBLC. CRAI comprises seven modules for detecting histological features, generating 19 pathologically significant findings. A downstream XGBoost classifier was developed to predict disease progression using these findings. The models performance was evaluated using respiratory function changes and survival analysis in cross-validation and external test cohorts. FindingsIn the internal cross-validation (135 cases), the model predicted 105 cases without disease progression and 30 with disease progression. The annual {Delta}%FVC was -1.293 in the non-progressive group versus -5.198 in the progressive group, outperforming most pathologists diagnoses. In the external test cohort (48 cases), the model predicted 38 non-progressive and 10 progressive cases. Survival analysis demonstrated significantly shorter survival times in the progressive group (p=0.034). InterpretationCRAI provides a comprehensive, interpretable approach to analyzing TBLC specimens, offering potential for standardizing ILD diagnosis and predicting disease progression. The model could facilitate early identification of progressive cases and guide personalized therapeutic interventions. FundingNew Energy and Industrial Technology Development Organization (NEDO) and Japanese Ministry of Health, Labor, and Welfare.

Accurate adult age estimation represents a critical component of forensic individual identification. However, traditional methods relying on skeletal developmental characteristics are susceptible to preservation status and developmental variation. Teeth, owing to their exceptional taphonomic resistance and minimal postmortem alteration, emerge as premier biological samples. Utilizing the high-resolution capabilities of Cone Beam Computed Tomography (CBCT), this study retrospectively analyzed 1,857 right first molars obtained from Han Chinese adults in Sichuan Province (883 males, 974 females; aged 18-65 years). Pulp chamber volume (PCV) was measured using semi-automatic segmentation in Mimics software (v21.0). Statistically significant differences in PCV were observed based on sex and tooth position (maxillary vs. mandibular). Significant negative correlations existed between PCV and age (r = -0.86 to -0.81). The strongest correlation (r = -0.88) was identified in female maxillary first molars. Eleven curvilinear regression models and six machine learning models (Linear Regression, Lasso Regression, Neural Network, Random Forest, Gradient Boosting, and XGBoost) were developed. Among the curvilinear regression models, the cubic model demonstrated the best performance, with the female maxillary-specific model achieving a mean absolute error (MAE) of 4.95 years. Machine learning models demonstrated superior accuracy. Specifically, the sex- and tooth position-specific XGBoost model for female maxillary first molars achieved an MAE of 3.14 years (R{superscript 2} = 0.87). This represents a significant 36.5% reduction in error compared to the optimal cubic regression model. These findings demonstrate that PCV measurements in first molars, combined with machine learning algorithms (specifically XGBoost), effectively overcome the limitations of traditional methods, providing a highly precise and reproducible approach for forensic age estimation.

White matter hyperintensities (WMH) are frequently observed on MRI in aging and Alzheimers disease (AD), yet their microstructural pathology remains poorly characterized. Conventional MRI sequences provide limited information to describe the tissue abnormalities underlying WMH, while histopathology--the gold standard--can only be applied postmortem. Quantitative MRI (qMRI) offers promising non-invasive alternatives to postmortem histopathology, but lacks histological validation of these metrics in AD. In this study, we examined the relationship between MRI metrics and histopathology in postmortem brain scans from eight donors with AD from the South Texas Alzheimers Disease Research Center. Regions of interest are delineated by aligning MRI-identified WMH in the brain donor scans with postmortem histological sections. Histopathological features, including myelin integrity, tissue vacuolation, and gliosis, are quantified within these regions using machine learning. We report the correlations between these histopathological measures and two qMRI metrics: T2 and absolute myelin water signal (aMWS) maps, as well as conventional T1w/T2w MRI. The results derived from aMWS and T2 mapping indicate a strong association between WMH, myelin loss, and increased tissue vacuolation. Bland-Altman analyses indicated that T2 mapping showed more consistent agreement with histopathology, whereas the derived aMWS demonstrated signs of systematic bias. T1w/T2w values exhibited weaker associations with histological alterations. Additionally, we observed distinct patterns of gliosis in periventricular and subcortical WMH. Our study presents one of the first histopathological validations of qMRI in AD, confirming that aMWS and T2 mapping are robust, non-invasive biomarkers that offer promising ways to monitor white matter pathology in neurodegenerative disorders.

Machine learning using transformers has shown great potential in medical imaging, but its real-world applicability remains limited due to the scarcity of annotated data. In this study, we propose a practical framework for the few-shot deployment of pretrained MRI transformers in diverse brain imaging tasks. By utilizing the Masked Autoencoder (MAE) pretraining strategy on a large-scale, multi-cohort brain MRI dataset comprising over 31 million slices, we obtain highly transferable latent representations that generalize well across tasks and datasets. For high-level tasks such as classification, a frozen MAE encoder combined with a lightweight linear head achieves state-of-the-art accuracy in MRI sequence identification with minimal supervision. For low-level tasks such as segmentation, we propose MAE-FUnet, a hybrid architecture that fuses multiscale CNN features with pretrained MAE embeddings. This model consistently outperforms other strong baselines in both skull stripping and multi-class anatomical segmentation under data-limited conditions. With extensive quantitative and qualitative evaluations, our framework demonstrates efficiency, stability, and scalability, suggesting its suitability for low-resource clinical environments and broader neuroimaging applications.

Medical image synthesis is an important topic for both clinical and research applications. Recently, diffusion models have become a leading approach in this area. Despite their strengths, many existing methods struggle with (1) limited generalizability that only work for specific body regions or voxel spacings, (2) slow inference, which is a common issue for diffusion models, and (3) weak alignment with input conditions, which is a critical issue for medical imaging. MAISI, a previously proposed framework, addresses generalizability issues but still suffers from slow inference and limited condition consistency. In this work, we present MAISI-v2, the first accelerated 3D medical image synthesis framework that integrates rectified flow to enable fast and high quality generation. To further enhance condition fidelity, we introduce a novel region-specific contrastive loss to enhance the sensitivity to region of interest. Our experiments show that MAISI-v2 can achieve SOTA image quality with $33 \times$ acceleration for latent diffusion model. We also conducted a downstream segmentation experiment to show that the synthetic images can be used for data augmentation. We release our code, training details, model weights, and a GUI demo to facilitate reproducibility and promote further development within the community.

The objective of this study is to investigate the predictive ability of abdominal fat features derived from computed tomography (CT) to predict early recurrence within a year following the initial transurethral resection of bladder tumor (TURBT) in patients with non-muscle-invasive bladder cancer (NMIBC). A predictive model is constructed in combination with clinical factors to aid in the evaluation of the risk of early recurrence among patients with NMIBC after initial TURBT. This retrospective study enrolled 325 NMIBC patients from three centers. Machine-learning-based visceral adipose tissue (VAT) radiomics models (VAT-RM) and subcutaneous adipose tissue (SAT) radiomics models (SAT-RM) were constructed to identify patients with early recurrence. A combined model integrating VAT-RM and clinical factors was established. The predictive performance of each variable and model was analyzed using the area under the receiver operating characteristic curve (AUC). The net benefit of each variable and model was presented through decision curve analysis (DCA). The calibration was evaluated utilizing the Hosmer-Lemeshow test. The VAT-RM demonstrated satisfactory performance in the training cohort (AUC = 0.853, 95% CI 0.768-0.937), test cohort 1 (AUC = 0.823, 95% CI 0.730-0.916), and test cohort 2 (AUC = 0.808, 95% CI 0.681-0.935). Across all cohorts, the AUC values of the VAT-RM were higher than those of the SAT-RM (P < 0.001). The DCA curves further confirmed that the clinical net profit of the VAT-RM was superior to that of the SAT-RM. In multivariate logistic regression analysis, the VAT-RM emerged as the most significant independent predictor (odds ratio [OR] = 0.295, 95% CI 0.141-0.508, P < 0.001). The fusion model exhibited excellent AUC values of 0.938, 0.909, and 0.905 across three cohorts. The fusion model surpassed the traditional risk assessment frameworks in both predictive efficacy and clinical net benefit. VAT serves as a crucial factor in early postoperative recurrence in NMIBC patients. The VAT-RM can accurately identify high-risk patients with early postoperative recurrence, offering significant advantages over SAT-RM. The new predictive model constructed by integrating the VAT-RM and clinical factors exhibits excellent predictive performance, clinical net benefits, and calibration accuracy.

Digital subtraction angiography (DSA) offers a real-time approach to locating lower gastrointestinal (GI) bleeding. However, many sources of bleeding are not easily visible on angiograms. This investigation aims to develop a machine learning tool that can locate GI bleeding on DSA prior to transarterial embolization. All mesenteric artery angiograms and arterial embolization DSA images obtained in the interventional radiology department between January 1, 2007, and December 31, 2021, were analyzed. These images were acquired using fluoroscopy imaging systems (Siemens Healthineers, USA). Thirty-nine unique series of bleeding images were augmented to train two-dimensional (2D) and three-dimensional (3D) residual neural networks (ResUNet++) for image segmentation. The 2D ResUNet++ network was trained on 3,548 images and tested on 394 images, whereas the 3D ResUNet++ network was trained on 316 3D objects and tested on 35 objects. For each case, both manually cropped images focused on the GI bleed and uncropped images were evaluated, with a superimposition post-processing (SIPP) technique applied to both image types. Based on both quantitative and qualitative analyses, the 2D ResUNet++ network significantly outperformed the 3D ResUNet++ model. In the qualitative evaluation, the 2D ResUNet++ model achieved the highest accuracy across both 128 × 128 and 256 × 256 input resolutions when enhanced with the SIPP technique, reaching accuracy rates between 95% and 97%. However, despite the improved detection consistency provided by SIPP, a reduction in Dice similarity coefficients was observed compared with models without post-processing. Specifically, the 2D ResUNet++ model combined with SIPP achieved a Dice accuracy of only 80%. This decline is primarily attributed to an increase in false positive predictions introduced by the temporal propagation of segmentation masks across frames. Both 2D and 3D ResUNet++ networks can be trained to locate GI bleeding on DSA images prior to transarterial embolization. However, further research and refinement are needed before this technology can be implemented in DSA for real-time prediction. Automated detection of GI bleeding in DSA may reduce time to embolization, thereby improving patient outcomes.