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Predicting overall survival of NSCLC patients with clinical, radiomics and deep learning features

Kanakarajan, H., Zhou, J., Baene, W. D., Sitskoorn, M.

medrxiv logopreprintJun 16 2025
Background and purposeAccurate estimation of Overall Survival (OS) in Non-Small Cell Lung Cancer (NSCLC) patients provides critical insights for treatment planning. While previous studies showed that radiomics and Deep Learning (DL) features increased prediction accuracy, this study aimed to examine whether a model that combines the radiomics and DL features with the clinical and dosimetric features outperformed other models. Materials and methodsWe collected pre-treatment lung CT scans and clinical data for 225 NSCLC patients from the Maastro Clinic: 180 for training and 45 for testing. Radiomics features were extracted using the Python radiomics feature extractor, and DL features were obtained using a 3D ResNet model. An ensemble model comprising XGB and NN classifiers was developed using: (1) clinical features only; (2) clinical and radiomics features; (3) clinical and DL features; and (4) clinical, radiomics, and DL features. The performance metrics were evaluated for the test and K-fold cross-validation data sets. ResultsThe prediction model utilizing only clinical variables provided an Area Under the Receiver Operating Characteristic Curve (AUC) of 0.64 and a test accuracy of 77.55%. The best performance came from combining clinical, radiomics, and DL features (AUC: 0.84, accuracy: 85.71%). The prediction improvement of this model was statistically significant compared to models trained with clinical features alone or with a combination of clinical and radiomics features. ConclusionIntegrating radiomics and DL features with clinical characteristics improved the prediction of OS after radiotherapy for NSCLC patients. The increased accuracy of our integrated model enables personalized, risk-based treatment planning, guiding clinicians toward more effective interventions, improved patient outcomes and enhanced quality of life.

Rate of brain aging associates with future executive function in Asian children and older adults.

Cheng SF, Yue WL, Ng KK, Qian X, Liu S, Tan TWK, Nguyen KN, Leong RLF, Hilal S, Cheng CY, Tan AP, Law EC, Gluckman PD, Chen CL, Chong YS, Meaney MJ, Chee MWL, Yeo BTT, Zhou JH

pubmed logopapersJun 16 2025
Brain age has emerged as a powerful tool to understand neuroanatomical aging and its link to health outcomes like cognition. However, there remains a lack of studies investigating the rate of brain aging and its relationship to cognition. Furthermore, most brain age models are trained and tested on cross-sectional data from primarily Caucasian, adult participants. It is thus unclear how well these models generalize to non-Caucasian participants, especially children. Here, we tested a previously published deep learning model on Singaporean elderly participants (55-88 years old) and children (4-11 years old). We found that the model directly generalized to the elderly participants, but model finetuning was necessary for children. After finetuning, we found that the rate of change in brain age gap was associated with future executive function performance in both elderly participants and children. We further found that lateral ventricles and frontal areas contributed to brain age prediction in elderly participants, while white matter and posterior brain regions were more important in predicting brain age of children. Taken together, our results suggest that there is potential for generalizing brain age models to diverse populations. Moreover, the longitudinal change in brain age gap reflects developing and aging processes in the brain, relating to future cognitive function.

Artificial intelligence (AI) and CT in abdominal imaging: image reconstruction and beyond.

Pisuchpen N, Srinivas Rao S, Noda Y, Kongboonvijit S, Rezaei A, Kambadakone A

pubmed logopapersJun 16 2025
Computed tomography (CT) is a cornerstone of abdominal imaging, playing a vital role in accurate diagnosis, appropriate treatment planning, and disease monitoring. The evolution of artificial intelligence (AI) in imaging has introduced deep learning-based reconstruction (DLR) techniques that enhance image quality, reduce radiation dose, and improve workflow efficiency. Traditional image reconstruction methods, including filtered back projection (FBP) and iterative reconstruction (IR), have limitations such as high noise levels and artificial image texture. DLR overcomes these challenges by leveraging convolutional neural networks to generate high-fidelity images while preserving anatomical details. Recent advances in vendor-specific and vendor-agnostic DLR algorithms, such as TrueFidelity, AiCE, and Precise Image, have demonstrated significant improvements in contrast-to-noise ratio, lesion detection, and diagnostic confidence across various abdominal organs, including the liver, pancreas, and kidneys. Furthermore, AI extends beyond image reconstruction to applications such as low contrast lesion detection, quantitative imaging, and workflow optimization, augmenting radiologists' efficiency and diagnostic accuracy. However, challenges remain in clinical validation, standardization, and widespread adoption. This review explores the principles, advancements, and future directions of AI-driven CT image reconstruction and its expanding role in abdominal imaging.

Predicting mucosal healing in Crohn's disease: development of a deep-learning model based on intestinal ultrasound images.

Ma L, Chen Y, Fu X, Qin J, Luo Y, Gao Y, Li W, Xiao M, Cao Z, Shi J, Zhu Q, Guo C, Wu J

pubmed logopapersJun 16 2025
Predicting treatment response in Crohn's disease (CD) is essential for making an optimal therapeutic regimen, but relevant models are lacking. This study aimed to develop a deep learning model based on baseline intestinal ultrasound (IUS) images and clinical information to predict mucosal healing. Consecutive CD patients who underwent pretreatment IUS were retrospectively recruited at a tertiary hospital. A total of 1548 IUS images of longitudinal diseased bowel segments were collected and divided into a training cohort and a test cohort. A convolutional neural network model was developed to predict mucosal healing after one year of standardized treatment. The model's efficacy was validated using the five-fold internal cross-validation and further tested in the test cohort. A total of 190 patients (68.9% men, mean age 32.3 ± 14.1 years) were enrolled, consisting of 1038 IUS images of mucosal healing and 510 images of no mucosal healing. The mean area under the curve in the test cohort was 0.73 (95% CI: 0.68-0.78), with the mean sensitivity of 68.1% (95% CI: 60.5-77.4%), specificity of 69.5% (95% CI: 60.1-77.2%), positive prediction value of 80.0% (95% CI: 74.5-84.9%), negative prediction value of 54.8% (95% CI: 48.0-63.7%). Heat maps showing the deep-learning decision-making process revealed that information from the bowel wall, serous surface, and surrounding mesentery was mainly considered by the model. We developed a deep learning model based on IUS images to predict mucosal healing in CD with notable accuracy. Further validation and improvement of this model with more multi-center, real-world data are needed. Predicting treatment response in CD is essential to making an optimal therapeutic regimen. In this study, a deep-learning model using pretreatment ultrasound images and clinical information was generated to predict mucosal healing with an AUC of 0.73. Response to medication treatment is highly variable among patients with CD. High-resolution IUS images of the intestinal wall may hide significant characteristics for treatment response. A deep-learning model capable of predicting treatment response was generated using pretreatment IUS images.

AN INNOVATIVE MACHINE LEARNING-BASED ALGORITHM FOR DIAGNOSING PEDIATRIC OVARIAN TORSION.

Boztas AE, Sencan E, Payza AD, Sencan A

pubmed logopapersJun 16 2025
We aimed to develop a machine-learning(ML) algorithm consisting of physical examination, sonographic findings, and laboratory markers. The data of 70 patients with confirmed ovarian torsion followed and treated in our clinic for ovarian torsion and 73 patients for control group that presented to the emergency department with similar complaints but didn't have ovarian torsion detected on ultrasound as the control group between 2013-2023 were retrospectively analyzed. Sonographic findings, laboratory values, and clinical status of patients were examined and fed into three supervised ML systems to identify and develop viable decision algorithms. Presence of nausea/vomiting and symptom duration was statistically significant(p<0.05) for ovarian torsion. Presence of abdominal pain and palpable mass on physical examination weren't significant(p>0.05). White blood cell count(WBC), neutrophile/lymphocyte ratio(NLR), systemic immune-inflammation index(SII) and systemic inflammation response index(SIRI), high values of C-reactive protein was highly significant in prediction of torsion( p<0.001,p<0.05). Ovarian size ratio, medialization, follicular ring sign, presence of free fluid in pelvis in ultrasound demonstrated statistical significance in the torsion group(p<0.001). We used supervised ML algorithms, including decision trees, random forests, and LightGBM, to classify patients as either control or having torsion. We evaluated the models using 5-fold cross-validation, achieving an average F1-score of 98%, an accuracy of 98%, and a specificity of 100% across each fold with the decision tree model. This study represents the first development of a ML algorithm that integrates clinical, laboratory and ultrasonographic findings for the diagnosis of pediatric ovarian torsion with over 98% accuracy.

Interpretable deep fuzzy network-aided detection of central lymph node metastasis status in papillary thyroid carcinoma.

Wang W, Ning Z, Zhang J, Zhang Y, Wang W

pubmed logopapersJun 16 2025
The non-invasive assessment of central lymph node metastasis (CLNM) in patients with papillary thyroid carcinoma (PTC) plays a crucial role in assisting treatment decision and prognosis planning. This study aims to use an interpretable deep fuzzy network guided by expert knowledge to predict the CLNM status of patients with PTC from ultrasound images. A total of 1019 PTC patients were enrolled in this study, comprising 465 CLNM patients and 554 non-CLNM patients. Pathological diagnosis served as the gold standard to determine metastasis status. Clinical and morphological features of thyroid were collected as expert knowledge to guide the deep fuzzy network in predicting CLNM status. The network consisted of a region of interest (ROI) segmentation module, a knowledge-aware feature extraction module, and a fuzzy prediction module. The network was trained on 652 patients, validated on 163 patients and tested on 204 patients. The model exhibited promising performance in predicting CLNM status, achieving the area under the receiver operating characteristic curve (AUC), accuracy, precision, sensitivity and specificity of 0.786 (95% CI 0.720-0.846), 0.745 (95% CI 0.681-0.799), 0.727 (95% CI 0.636-0.819), 0.696 (95% CI 0.594-0.789), and 0.786 (95% CI 0.712-0.864), respectively. In addition, the rules of the fuzzy system in the model are easy to understand and explain, and have good interpretability. The deep fuzzy network guided by expert knowledge predicted CLNM status of PTC patients with high accuracy and good interpretability, and may be considered as an effective tool to guide preoperative clinical decision-making.

A Semi-supervised Ultrasound Image Segmentation Network Integrating Enhanced Mask Learning and Dynamic Temperature-controlled Self-distillation.

Xu L, Huang Y, Zhou H, Mao Q, Yin W

pubmed logopapersJun 16 2025
Ultrasound imaging is widely used in clinical practice due to its advantages of no radiation and real-time capability. However, its image quality is often degraded by speckle noise, low contrast, and blurred boundaries, which pose significant challenges for automatic segmentation. In recent years, deep learning methods have achieved notable progress in ultrasound image segmentation. Nonetheless, these methods typically require large-scale annotated datasets, incur high computational costs, and suffer from slow inference speeds, limiting their clinical applicability. To overcome these limitations, we propose EML-DMSD, a novel semi-supervised segmentation network that combines Enhanced Mask Learning (EML) and Dynamic Temperature-Controlled Multi-Scale Self-Distillation (DMSD). The EML module improves the model's robustness to noise and boundary ambiguity, while the DMSD module introduces a teacher-free, multi-scale self-distillation strategy with dynamic temperature adjustment to boost inference efficiency and reduce reliance on extensive resources. Experiments on multiple ultrasound benchmark datasets demonstrate that EML-DMSD achieves superior segmentation accuracy with efficient inference, highlighting its strong generalization ability and clinical potential.

Appropriateness of acute breast symptom recommendations provided by ChatGPT.

Byrd C, Kingsbury C, Niell B, Funaro K, Bhatt A, Weinfurtner RJ, Ataya D

pubmed logopapersJun 16 2025
We evaluated the accuracy of ChatGPT-3.5's responses to common questions regarding acute breast symptoms and explored whether using lay language, as opposed to medical language, affected the accuracy of the responses. Questions were formulated addressing acute breast conditions, informed by the American College of Radiology (ACR) Appropriateness Criteria (AC) and our clinical experience at a tertiary referral breast center. Of these, seven addressed the most common acute breast symptoms, nine addressed pregnancy-associated breast symptoms, and four addressed specific management and imaging recommendations for a palpable breast abnormality. Questions were submitted three times to ChatGPT-3.5 and all responses were assessed by five fellowship-trained breast radiologists. Evaluation criteria included clinical judgment and adherence to the ACR guidelines, with responses scored as: 1) "appropriate," 2) "inappropriate" if any response contained inappropriate information, or 3) "unreliable" if responses were inconsistent. A majority vote determined the appropriateness for each question. ChatGPT-3.5 generated responses were appropriate for 7/7 (100 %) questions regarding common acute breast symptoms when phrased both colloquially and using standard medical terminology. In contrast, ChatGPT-3.5 generated responses were appropriate for 3/9 (33 %) questions about pregnancy-associated breast symptoms and 3/4 (75 %) questions about management and imaging recommendations for a palpable breast abnormality. ChatGPT-3.5 can automate healthcare information related to appropriate management of acute breast symptoms when prompted with both standard medical terminology or lay phrasing of the questions. However, physician oversight remains critical given the presence of inappropriate recommendations for pregnancy associated breast symptoms and management of palpable abnormalities.

An 11,000-Study Open-Access Dataset of Longitudinal Magnetic Resonance Images of Brain Metastases

Saahil Chadha, David Weiss, Anastasia Janas, Divya Ramakrishnan, Thomas Hager, Klara Osenberg, Klara Willms, Joshua Zhu, Veronica Chiang, Spyridon Bakas, Nazanin Maleki, Durga V. Sritharan, Sven Schoenherr, Malte Westerhoff, Matthew Zawalich, Melissa Davis, Ajay Malhotra, Khaled Bousabarah, Cornelius Deuschl, MingDe Lin, Sanjay Aneja, Mariam S. Aboian

arxiv logopreprintJun 16 2025
Brain metastases are a common complication of systemic cancer, affecting over 20% of patients with primary malignancies. Longitudinal magnetic resonance imaging (MRI) is essential for diagnosing patients, tracking disease progression, assessing therapeutic response, and guiding treatment selection. However, the manual review of longitudinal imaging is time-intensive, especially for patients with multifocal disease. Artificial intelligence (AI) offers opportunities to streamline image evaluation, but developing robust AI models requires comprehensive training data representative of real-world imaging studies. Thus, there is an urgent necessity for a large dataset with heterogeneity in imaging protocols and disease presentation. To address this, we present an open-access dataset of 11,884 longitudinal brain MRI studies from 1,430 patients with clinically confirmed brain metastases, paired with clinical and image metadata. The provided dataset will facilitate the development of AI models to assist in the long-term management of patients with brain metastasis.

Default Mode Network Connectivity Predicts Individual Differences in Long-Term Forgetting: Evidence for Storage Degradation, not Retrieval Failure

Xu, Y., Prat, C. S., Sense, F., van Rijn, H., Stocco, A.

biorxiv logopreprintJun 16 2025
Despite the importance of memories in everyday life and the progress made in understanding how they are encoded and retrieved, the neural processes by which declarative memories are maintained or forgotten remain elusive. Part of the problem is that it is empirically difficult to measure the rate at which memories fade, even between repeated presentations of the source of the memory. Without such a ground-truth measure, it is hard to identify the corresponding neural correlates. This study addresses this problem by comparing individual patterns of functional connectivity against behavioral differences in forgetting speed derived from computational phenotyping. Specifically, the individual-specific values of the speed of forgetting in long-term memory (LTM) were estimated for 33 participants using a formal model fit to accuracy and response time data from an adaptive paired-associate learning task. Individual speeds of forgetting were then used to examine participant-specific patterns of resting-state fMRI connectivity, using machine learning techniques to identify the most predictive and generalizable features. Our results show that individual speeds of forgetting are associated with resting-state connectivity within the default mode network (DMN) as well as between the DMN and cortical sensory areas. Cross-validation showed that individual speeds of forgetting were predicted with high accuracy (r = .78) from these connectivity patterns alone. These results support the view that DMN activity and the associated sensory regions are actively involved in maintaining memories and preventing their decline, a view that can be seen as evidence for the hypothesis that forgetting is a result of storage degradation, rather than of retrieval failure.
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