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LMLCC-Net: A Semi-Supervised Deep Learning Model for Lung Nodule Malignancy Prediction from CT Scans using a Novel Hounsfield Unit-Based Intensity Filtering

Adhora Madhuri, Nusaiba Sobir, Tasnia Binte Mamun, Taufiq Hasan

arxiv logopreprintMay 9 2025
Lung cancer is the leading cause of patient mortality in the world. Early diagnosis of malignant pulmonary nodules in CT images can have a significant impact on reducing disease mortality and morbidity. In this work, we propose LMLCC-Net, a novel deep learning framework for classifying nodules from CT scan images using a 3D CNN, considering Hounsfield Unit (HU)-based intensity filtering. Benign and malignant nodules have significant differences in their intensity profile of HU, which was not exploited in the literature. Our method considers the intensity pattern as well as the texture for the prediction of malignancies. LMLCC-Net extracts features from multiple branches that each use a separate learnable HU-based intensity filtering stage. Various combinations of branches and learnable ranges of filters were explored to finally produce the best-performing model. In addition, we propose a semi-supervised learning scheme for labeling ambiguous cases and also developed a lightweight model to classify the nodules. The experimental evaluations are carried out on the LUNA16 dataset. Our proposed method achieves a classification accuracy (ACC) of 91.96%, a sensitivity (SEN) of 92.04%, and an area under the curve (AUC) of 91.87%, showing improved performance compared to existing methods. The proposed method can have a significant impact in helping radiologists in the classification of pulmonary nodules and improving patient care.

Circulating Antioxidant Nutrients and Brain Age in Midlife Adults.

Lower MJ, DeCataldo MK, Kraynak TE, Gianaros PJ

pubmed logopapersMay 9 2025
Due to population aging, the increasing prevalence of Alzheimer's Disease (AD) and related dementias are major public health concerns. Dietary consumption of antioxidant nutrients, in particular the carotenoid β-carotene, has been associated with lower age-related neurocognitive decline. What is unclear, however, is the extent to which antioxidant nutrients may exert neuroprotective effects via their influence on established indicators of age-related changes in brain tissue. This study thus tested associations of circulating β-carotene and other nutrients with a structural neuroimaging indicator of brain age derived from cross-validated machine learning models trained to predict chronological age from brain tissue morphology in independent cohorts. Midlife adults (N=132, aged 30.4 to 50.8 years, 59 female at birth) underwent a structural magnetic resonance imaging (MRI) protocol and fasting phlebotomy to assess plasma concentrations of β-carotene, retinol, γ-tocopherol, ⍺-tocopherol, and β-cryptoxanthin. In regression analyses adjusting for chronological age, sex at birth, smoking status, MRI image quality, season of testing, annual income, and education, greater circulating levels of β-carotene were associated with a lower (i.e., younger) predicted brain age (β=-0.23, 95% CI=-0.40 to -0.07, P=0.006). Other nutrients were not statistically associated with brain age, and results persisted after additional covariate control for body mass index, cortical volume, and cortical thickness. These cross-sectional findings are consistent with the possibility that dietary intake of β-carotene may be associated with slower biological aging at the level of the brain, as reflected by a neuroimaging indicator of brain age.

Multimodal Integration of Plasma, MRI, and Genetic Risk for Cerebral Amyloid Prediction

yichen, w., Chen, H., yuxin, C., Yuyan, C., shiyun, Z., Kexin, W., Yidong, J., Tianyu, B., Yanxi, H., MingKai, Z., Chengxiang, Y., Guozheng, F., Weijie, H., Ni, S., Ying, H.

medrxiv logopreprintMay 8 2025
Accurate estimation of cerebral amyloid-{beta} (A{beta}) burden is critical for early detection and risk stratification in Alzheimers disease (AD). While A{beta} positron emission tomography (PET) remains the gold standard, its high cost, invasive nature and limited accessibility hinder broad clinical application. Blood-based biomarkers offer a non-invasive and cost-effective alternative, but their standalone predictive accuracy remains limited due to biological heterogeneity and limited reflection of central nervous system pathology. Here, we present a high-precision, multimodal prediction machine learning model that integrates plasma biomarkers, brain structural magnetic resonance imaging (sMRI) features, diffusion tensor imaging (DTI)-derived structural connectomes, and genetic risk profiles. The model was trained on 150 participants from the Alzheimers Disease Neuroimaging Initiative (ADNI) and externally validated on 111 participants from the SILCODE cohort. Multimodal integration substantially improved A{beta} prediction, with R{superscript 2} increasing from 0.515 using plasma biomarkers alone to 0.637 when adding imaging and genetic features. These results highlight the potential of this multimodal machine learning approach as a scalable, non-invasive, and economically viable alternative to PET for estimating A{beta} burden.

Radiomics-based machine learning in prediction of response to neoadjuvant chemotherapy in osteosarcoma: A systematic review and meta-analysis.

Salimi M, Houshi S, Gholamrezanezhad A, Vadipour P, Seifi S

pubmed logopapersMay 8 2025
Osteosarcoma (OS) is the most common primary bone malignancy, and neoadjuvant chemotherapy (NAC) improves survival rates. However, OS heterogeneity results in variable treatment responses, highlighting the need for reliable, non-invasive tools to predict NAC response. Radiomics-based machine learning (ML) offers potential for identifying imaging biomarkers to predict treatment outcomes. This systematic review and meta-analysis evaluated the accuracy and reliability of radiomics models for predicting NAC response in OS. A systematic search was conducted in PubMed, Embase, Scopus, and Web of Science up to November 2024. Studies using radiomics-based ML for NAC response prediction in OS were included. Pooled sensitivity, specificity, and AUC for training and validation cohorts were calculated using bivariate random-effects modeling, with clinical-combined models analyzed separately. Quality assessment was performed using the QUADAS-2 tool, radiomics quality score (RQS), and METRICS scores. Sixteen studies were included, with 63 % using MRI and 37 % using CT. Twelve studies, comprising 1639 participants, were included in the meta-analysis. Pooled metrics for training cohorts showed an AUC of 0.93, sensitivity of 0.89, and specificity of 0.85. Validation cohorts achieved an AUC of 0.87, sensitivity of 0.81, and specificity of 0.82. Clinical-combined models outperformed radiomics-only models. The mean RQS score was 9.44 ± 3.41, and the mean METRICS score was 60.8 % ± 17.4 %. Radiomics-based ML shows promise for predicting NAC response in OS, especially when combined with clinical indicators. However, limitations in external validation and methodological consistency must be addressed.

Machine learning-based approaches for distinguishing viral and bacterial pneumonia in paediatrics: A scoping review.

Rickard D, Kabir MA, Homaira N

pubmed logopapersMay 8 2025
Pneumonia is the leading cause of hospitalisation and mortality among children under five, particularly in low-resource settings. Accurate differentiation between viral and bacterial pneumonia is essential for guiding appropriate treatment, yet it remains challenging due to overlapping clinical and radiographic features. Advances in machine learning (ML), particularly deep learning (DL), have shown promise in classifying pneumonia using chest X-ray (CXR) images. This scoping review summarises the evidence on ML techniques for classifying viral and bacterial pneumonia using CXR images in paediatric patients. This scoping review was conducted following the Joanna Briggs Institute methodology and the PRISMA-ScR guidelines. A comprehensive search was performed in PubMed, Embase, and Scopus to identify studies involving children (0-18 years) with pneumonia diagnosed through CXR, using ML models for binary or multiclass classification. Data extraction included ML models, dataset characteristics, and performance metrics. A total of 35 studies, published between 2018 and 2025, were included in this review. Of these, 31 studies used the publicly available Kermany dataset, raising concerns about overfitting and limited generalisability to broader, real-world clinical populations. Most studies (n=33) used convolutional neural networks (CNNs) for pneumonia classification. While many models demonstrated promising performance, significant variability was observed due to differences in methodologies, dataset sizes, and validation strategies, complicating direct comparisons. For binary classification (viral vs bacterial pneumonia), a median accuracy of 92.3% (range: 80.8% to 97.9%) was reported. For multiclass classification (healthy, viral pneumonia, and bacterial pneumonia), the median accuracy was 91.8% (range: 76.8% to 99.7%). Current evidence is constrained by a predominant reliance on a single dataset and variability in methodologies, which limit the generalisability and clinical applicability of findings. To address these limitations, future research should focus on developing diverse and representative datasets while adhering to standardised reporting guidelines. Such efforts are essential to improve the reliability, reproducibility, and translational potential of machine learning models in clinical settings.

Ultrasound-based deep learning radiomics for enhanced axillary lymph node metastasis assessment: a multicenter study.

Zhang D, Zhou W, Lu WW, Qin XC, Zhang XY, Luo YH, Wu J, Wang JL, Zhao JJ, Zhang CX

pubmed logopapersMay 8 2025
Accurate preoperative assessment of axillary lymph node metastasis (ALNM) in breast cancer is crucial for guiding treatment decisions. This study aimed to develop a deep-learning radiomics model for assessing ALNM and to evaluate its impact on radiologists' diagnostic accuracy. This multicenter study included 866 breast cancer patients from 6 hospitals. The data were categorized into training, internal test, external test, and prospective test sets. Deep learning and handcrafted radiomics features were extracted from ultrasound images of primary tumors and lymph nodes. The tumor score and LN score were calculated following feature selection, and a clinical-radiomics model was constructed based on these scores along with clinical-ultrasonic risk factors. The model's performance was validated across the 3 test sets. Additionally, the diagnostic performance of radiologists, with and without model assistance, was evaluated. The clinical-radiomics model demonstrated robust discrimination with AUCs of 0.94, 0.92, 0.91, and 0.95 in the training, internal test, external test, and prospective test sets, respectively. It surpassed the clinical model and single score in all sets (P < .05). Decision curve analysis and clinical impact curves validated the clinical utility of the clinical-radiomics model. Moreover, the model significantly improved radiologists' diagnostic accuracy, with AUCs increasing from 0.71 to 0.82 for the junior radiologist and from 0.75 to 0.85 for the senior radiologist. The clinical-radiomics model effectively predicts ALNM in breast cancer patients using noninvasive ultrasound features. Additionally, it enhances radiologists' diagnostic accuracy, potentially optimizing resource allocation in breast cancer management.

Artificial intelligence applied to ultrasound diagnosis of pelvic gynecological tumors: a systematic review and meta-analysis.

Geysels A, Garofalo G, Timmerman S, Barreñada L, De Moor B, Timmerman D, Froyman W, Van Calster B

pubmed logopapersMay 8 2025
To perform a systematic review on artificial intelligence (AI) studies focused on identifying and differentiating pelvic gynecological tumors on ultrasound scans. Studies developing or validating AI models for diagnosing gynecological pelvic tumors on ultrasound scans were eligible for inclusion. We systematically searched PubMed, Embase, Web of Science, and Cochrane Central from their database inception until April 30th, 2024. To assess the quality of the included studies, we adapted the QUADAS-2 risk of bias tool to address the unique challenges of AI in medical imaging. Using multi-level random effects models, we performed a meta-analysis to generate summary estimates of the area under the receiver operating characteristic curve (AUC), sensitivity, and specificity. To provide a reference point of current diagnostic support tools for ultrasound examiners, we descriptively compared the pooled performance to that of the well-recognized ADNEX model on external validation. Subgroup analyses were performed to explore sources of heterogeneity. From 9151 records retrieved, 44 studies were eligible: 40 on ovarian, three on endometrial, and one on myometrial pathology. Overall, 95% were at high risk of bias - primarily due to inappropriate study inclusion criteria, the absence of a patient-level split of training and testing image sets, and no calibration assessment. For ovarian tumors, the summary AUC for AI models distinguishing benign from malignant tumors was 0.89 (95% CI: 0.85-0.92). In lower-risk studies (at least three low-risk domains), the summary AUC dropped to 0.87 (0.83-0.90), with deep learning models outperforming radiomics-based machine learning approaches in this subset. Only five studies included an external validation, and six evaluated calibration performance. In a recent systematic review of external validation studies, the ADNEX model had a pooled AUC of 0.93 (0.91-0.94) in studies at low risk of bias. Studies on endometrial and myometrial pathologies were reported individually. Although AI models show promising discriminative performances for diagnosing gynecological tumors on ultrasound, most studies have methodological shortcomings that result in a high risk of bias. In addition, the ADNEX model appears to outperform most AI approaches for ovarian tumors. Future research should emphasize robust study designs - ideally large, multicenter, and prospective cohorts that mirror real-world populations - along with external validation, proper calibration, and standardized reporting. This study was pre-registered with Open Science Framework (OSF): https://doi.org/10.17605/osf.io/bhkst.

Robust Computation of Subcortical Functional Connectivity Guided by Quantitative Susceptibility Mapping: An Application in Parkinson's Disease Diagnosis.

Qin J, Wu H, Wu C, Guo T, Zhou C, Duanmu X, Tan S, Wen J, Zheng Q, Yuan W, Zhu Z, Chen J, Wu J, He C, Ma Y, Liu C, Xu X, Guan X, Zhang M

pubmed logopapersMay 8 2025
Previous resting state functional MRI (rs-fMRI) analyses of the basal ganglia in Parkinson's disease heavily relied on T1-weighted imaging (T1WI) atlases. However, subcortical structures are characterized by subtle contrast differences, making their accurate delineation challenging on T1WI. In this study, we aimed to introduce and validate a method that incorporates quantitative susceptibility mapping (QSM) into the rs-fMRI analytical pipeline to achieve precise subcortical nuclei segmentation and improve the stability of RSFC measurements in Parkinson's disease. A total of 321 participants (148 patients with Parkinson's Disease and 173 normal controls) were enrolled. We performed cross-modal registration at the individual level for rs-fMRI to QSM (FUNC2QSM) and T1WI (FUNC2T1), respectively.The consistency and accuracy of resting state functional connectivity (RSFC) measurements in two registration approaches were assessed by intraclass correlation coefficient and mutual information. Bootstrap analysis was performed to validate the stability of the RSFC differences between Parkinson's disease and normal controls. RSFC-based machine learning models were constructed for Parkinson's disease classification, using optimized hyperparameters (RandomizedSearchCV with 5-fold cross-validation). The consistency of RSFC measurements between the two registration methods was poor, whereas the QSM-guided approach showed better mutual information values, suggesting higher registration accuracy. The disruptions of RSFC identified with the QSM-guided approach were more stable and reliable, as confirmed by bootstrap analysis. In classification models, the QSM-guided method consistently outperformed the T1WI-guided method, achieving higher test-set ROC-AUC values (FUNC2QSM: 0.87-0.90, FUNC2T1: 0.67-0.70). The QSM-guided approach effectively enhanced the accuracy of subcortical segmentation and the stability of RSFC measurement, thus facilitating future biomarker development in Parkinson's disease.

A hybrid AI method for lung cancer classification using explainable AI techniques.

Shivwanshi RR, Nirala NS

pubmed logopapersMay 8 2025
The use of Artificial Intelligence (AI) methods for the analysis of CT (computed tomography) images has greatly contributed to the development of an effective computer-assisted diagnosis (CAD) system for lung cancer (LC). However, complex structures, multiple radiographic interrelations, and the dynamic locations of abnormalities within lung CT images make extracting relevant information to process and implement LC CAD systems difficult. These prominent problems are addressed in this paper by presenting a hybrid method of LC malignancy classification, which may help researchers and experts properly engineer the model's performance by observing how the model makes decisions. The proposed methodology is named IncCat-LCC: Explainer (Inception Net Cat Boost LC Classification: Explainer), which consists of feature extraction (FE) using the handcrafted radiomic Feature (HcRdF) extraction technique, InceptionNet CNN Feature (INCF) extraction, Vision Transformer Feature (ViTF) extraction, and XGBOOST (XGB)-based feature selection, and the GPU based CATBOOST (CB) classification technique. The proposed framework achieves better and highest performance scores for lung nodule multiclass malignancy classification when evaluated using metrics such as accuracy, precision, recall, f-1 score, specificity, and area under the roc curve as 96.74 %, 93.68 %, 96.74 %, 95.19 %, 98.47 % and 99.76 % consecutively for classifying highly normal class. Observing the explainable artificial intelligence (XAI) explanations will help readers understand the model performance and the statistical outcomes of the evaluation parameter. The work presented in this article may improve the existing LC CAD system and help assess the important parameters using XAI to recognize the factors contributing to enhanced performance and reliability.

Machine learning model for diagnosing salivary gland adenoid cystic carcinoma based on clinical and ultrasound features.

Su HZ, Li ZY, Hong LC, Wu YH, Zhang F, Zhang ZB, Zhang XD

pubmed logopapersMay 8 2025
To develop and validate machine learning (ML) models for diagnosing salivary gland adenoid cystic carcinoma (ACC) in the salivary glands based on clinical and ultrasound features. A total of 365 patients with ACC or non-ACC of the salivary glands treated at two centers were enrolled in training cohort, internal and external validation cohorts. Synthetic minority oversampling technique was used to address the class imbalance. The least absolute shrinkage and selection operator (LASSO) regression identified optimal features, which were subsequently utilized to construct predictive models employing five ML algorithms. The performance of the models was evaluated across a comprehensive array of learning metrics, prominently the area under the receiver operating characteristic curve (AUC). Through LASSO regression analysis, six key features-sex, pain symptoms, number, cystic areas, rat tail sign, and polar vessel-were identified and subsequently utilized to develop five ML models. Among these models, the support vector machine (SVM) model demonstrated superior performance, achieving the highest AUCs of 0.899 and 0.913, accuracy of 90.54% and 91.53%, and F1 scores of 0.774 and 0.783 in both the internal and external validation cohorts, respectively. Decision curve analysis further revealed that the SVM model offered enhanced clinical utility compared to the other models. The ML model based on clinical and US features provide an accurate and noninvasive method for distinguishing ACC from non-ACC. This machine learning model, constructed based on clinical and ultrasound characteristics, serves as a valuable tool for the identification of salivary gland adenoid cystic carcinoma. Rat tail sign and polar vessel on US predict adenoid cystic carcinoma (ACC). Machine learning models based on clinical and US features can identify ACC. The support vector machine model performed robustly and accurately.
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