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Atrophy related neuroimaging biomarkers for neurological and cognitive function in Wilson disease.

Hausmann AC, Rubbert C, Querbach SK, Ivan VL, Schnitzler A, Hartmann CJ, Caspers J

pubmed logopapersJul 1 2025
Although brain atrophy is a prevalent finding in Wilson disease (WD), its role as a contributing factor to clinical symptoms, especially cognitive decline, remains unclear. The objective of this study was to investigate different neuroimaging biomarkers related to grey matter atrophy and their relationship with neurological and cognitive impairment in WD. In this study, 30 WD patients and 30 age- and sex-matched healthy controls were enrolled prospectively and underwent structural magnetic resonance imaging (MRI). Regional atrophy was evaluated using established linear radiological measurements and the automated workflow volumetric estimation of gross atrophy and brain age longitudinally (veganbagel) for age- and sex-specific estimations of regional brain volume changes. Brain Age Gap Estimate (BrainAGE), defined as the discrepancy between machine learning predicted brain age from structural MRI and chronological age, was assessed using an established model. Atrophy markers and clinical scores were compared between 19 WD patients with a neurological phenotype (neuro-WD), 11 WD patients with a hepatic phenotype (hep-WD), and a healthy control group using Welch's ANOVA or Kruskal-Wallis test. Correlations between atrophy markers and neurological and neuropsychological scores were investigated using Spearman's correlation coefficients. Patients with neuro-WD demonstrated increased third ventricle width and bicaudate index, along with significant striatal-thalamic atrophy patterns that correlated with global cognitive function, mental processing speed, and verbal memory. Median BrainAGE was significantly higher in patients with neuro-WD (8.97 years, interquartile range [IQR] = 5.62-15.73) compared to those with hep-WD (4.72 years, IQR = 0.00-5.48) and healthy controls (0.46 years, IQR = - 4.11-4.24). Striatal-thalamic atrophy and BrainAGE were significantly correlated with neurological symptom severity. Our findings indicate advanced predicted brain age and substantial striatal-thalamic atrophy patterns in patients with neuro-WD, which serve as promising neuroimaging biomarkers for neurological and cognitive functions in treated, chronic WD.

Deep learning image reconstruction and adaptive statistical iterative reconstruction on coronary artery calcium scoring in high risk population for coronary heart disease.

Zhu L, Shi X, Tang L, Machida H, Yang L, Ma M, Ha R, Shen Y, Wang F, Chen D

pubmed logopapersJul 1 2025
Deep learning image reconstruction (DLIR) technology effectively improves the image quality while maintaining spatial resolution. The impact of DLIR on the quantification of coronary artery calcium (CAC) is still unclear. The purpose of this study was to investigate the effect of DLIR on the quantification of coronary calcium in high-risk populations. A retrospective study was conducted on patients who underwent coronary artery CT angiography (CCTA) at our hospital(China) from February 2022 to September 2022. Raw data were reconstructed with filtered back projection (FBP) reconstruction, 40% and 80% level adaptive statistical iterative reconstruction-veo (ASiR-V 40%, ASiR-V 80%) and low, medium and high-level deep learning algorithm (DLIR-L, DLIR-M, and DLIR-H). Calculate and compare the signal-to-noise and contrast-to-noise ratio, volumetric score, mass scores, and Agaston score of 6 sets of images. There were 178 patients, female (107), mean age (62.43 ± 9.26), and mean BMI (25.33 ± 3.18) kg/m<sup>2</sup>. Compared with FBP, the image noise of ASiR-V and DLIR was significantly reduced (P < 0.001). There was no significant difference in Agaston score, volumetric score, and mass scores among the six reconstruction algorithms (all P > 0.05). Bland-Altman diagram indicated that the Agatston scores of the five reconstruction algorithms showed good agreement with FBP, with DLIR-L(AUC, 110.08; 95% CI: 26.48, 432.92;)and ASIR-V40% (AUC,110.96; 95% CI: 26.23, 431.34;) having the highest consistency with FBP. Compared with FBP, DLIR and ASiR-V improve CT image quality to varying degrees while having no impact on Agatston score-based risk stratification. CACS is a powerful tool for cardiovascular risk stratification, and DLIR can improve image quality without affecting CACS, making it widely applicable in clinical practice.

Multi-machine learning model based on radiomics features to predict prognosis of muscle-invasive bladder cancer.

Wang B, Gong Z, Su P, Zhen G, Zeng T, Ye Y

pubmed logopapersJul 1 2025
This study aims to construct a survival prognosis prediction model for muscle-invasive bladder cancer based on CT imaging features. A total of 91 patients with muscle-invasive bladder cancer were sourced from the TCGA and TCIA dataset and were divided into a training group (64 cases) and a validation group (27 cases). Additionally, 54 patients with muscle-invasive bladder cancer were retrospectively collected from our hospital to serve as an external test group; their enhanced CT imaging data were analyzed and processed to identify the most relevant radiomic features. Five distinct machine learning methods were employed to develop the optimal radiomics model, which was then combined with clinical data to create a nomogram model aimed at accurately predicting the overall survival (OS) of patients with muscle-invasive bladder cancer. The model's performance was ultimately assessed using various evaluation methods, including the ROC curve, calibration curve, decision curve, and Kaplan-Meier (KM) analysis. Eight radiomic features were identified for modeling analysis. Among the models evaluated, the Gradient Boosting Machine (GBM) In the prediction of OS performed the best. the 2-year AUCs were 0.859, 95% CI (0.767-0.952) for the training group, 0.850, 95% CI (0.705-0.995) for the validation group, and 0.700, 95% CI (0.520-0.880) for the external test group. The 3-year AUCs were 0.809, 95% CI (0.704-0.913) for the training group, 0.895, 95% CI (0.768-1.000) for the validation group, and 0.730, 95% CI (0.569-0.891) for the external test group. The nomogram model incorporating clinical data achieved superior results, the AUCs for predicting 2-year OS were 0.913 (95% CI: 0.83-0.98) for the training group, 0.86 (95% CI: 0.78-0.96) for the validation group, and 0.778 (95% CI: 0.69-0.94) for the external test group; for predicting 3-year OS, the AUCs were 0.837 (95% CI: 0.83-0.98) for the training group, 0.982 (95% CI: 0.84-1.0) for the validation group, and 0.785 (95% CI: 0.75-0.96) for the external test group. The calibration curve demonstrated excellent calibration of the model, while the decision curve and KM analysis indicated that the model possesses substantial clinical utility. The GBM model, based on the radiomic features of enhanced CT imaging, holds significant potential for predicting the prognosis of patients with muscle-invasive bladder cancer. Furthermore, the combined model, which incorporates clinical features, demonstrates enhanced performance and is beneficial for clinical decision-making.

Deep learning for automated segmentation of radiation-induced changes in cerebral arteriovenous malformations following radiosurgery.

Ho HH, Yang HC, Yang WX, Lee CC, Wu HM, Lai IC, Chen CJ, Peng SJ

pubmed logopapersJul 1 2025
Despite the widespread use of stereotactic radiosurgery (SRS) to treat cerebral arteriovenous malformations (AVMs), this procedure can lead to radiation-induced changes (RICs) in the surrounding brain tissue. Volumetric assessment of RICs is crucial for therapy planning and monitoring. RICs that appear as hyper-dense areas in magnetic resonance T2-weighted (T2w) images are clearly identifiable; however, physicians lack tools for the segmentation and quantification of these areas. This paper presents an algorithm to calculate the volume of RICs in patients with AVMs following SRS. The algorithm could be used to predict the course of RICs and facilitate clinical management. We trained a Mask Region-based Convolutional Neural Network (Mask R-CNN) as an alternative to manual pre-processing in designating regions of interest. We also applied transfer learning to the DeepMedic deep learning model to facilitate the automatic segmentation and quantification of AVM edema regions in T2w images. The resulting quantitative findings were used to explore the effects of SRS treatment among 28 patients with unruptured AVMs based on 139 regularly tracked T2w scans. The actual range of RICs in the T2w images was labeled manually by a clinical radiologist to serve as the gold standard in supervised learning. The trained model was tasked with segmenting the test set for comparison with the manual segmentation results. The average Dice similarity coefficient in these comparisons was 71.8%. The proposed segmentation algorithm achieved results on par with conventional manual calculations in determining the volume of RICs, which were shown to peak at the end of the first year after SRS and then gradually decrease. These findings have the potential to enhance clinical decision-making. Not applicable.

[A deep learning method for differentiating nasopharyngeal carcinoma and lymphoma based on MRI].

Tang Y, Hua H, Wang Y, Tao Z

pubmed logopapersJul 1 2025
<b>Objective:</b>To development a deep learning(DL) model based on conventional MRI for automatic segmentation and differential diagnosis of nasopharyngeal carcinoma(NPC) and nasopharyngeal lymphoma(NPL). <b>Methods:</b>The retrospective study included 142 patients with NPL and 292 patients with NPC who underwent conventional MRI at Renmin Hospital of Wuhan University from June 2012 to February 2023. MRI from 80 patients were manually segmented to train the segmentation model. The automatically segmented regions of interest(ROIs) formed four datasets: T1 weighted images(T1WI), T2 weighted images(T2WI), T1 weighted contrast-enhanced images(T1CE), and a combination of T1WI and T2WI. The ImageNet-pretrained ResNet101 model was fine-tuned for the classification task. Statistical analysis was conducted using SPSS 22.0. The Dice coefficient loss was used to evaluate performance of segmentation task. Diagnostic performance was assessed using receiver operating characteristic(ROC) curves. Gradient-weighted class activation mapping(Grad-CAM) was imported to visualize the model's function. <b>Results:</b>The DICE score of the segmentation model reached 0.876 in the testing set. The AUC values of classification models in testing set were as follows: T1WI: 0.78(95%<i>CI</i> 0.67-0.81), T2WI: 0.75(95%<i>CI</i> 0.72-0.86), T1CE: 0.84(95%<i>CI</i> 0.76-0.87), and T1WI+T2WI: 0.93(95%<i>CI</i> 0.85-0.94). The AUC values for the two clinicians were 0.77(95%<i>CI</i> 0.72-0.82) for the junior, and 0.84(95%<i>CI</i> 0.80-0.89) for the senior. Grad-CAM analysis revealed that the central region of the tumor was highly correlated with the model's classification decisions, while the correlation was lower in the peripheral regions. <b>Conclusion:</b>The deep learning model performed well in differentiating NPC from NPL based on conventional MRI. The T1WI+T2WI combination model exhibited the best performance. The model can assist in the early diagnosis of NPC and NPL, facilitating timely and standardized treatment, which may improve patient prognosis.

Mechanically assisted non-invasive ventilation for liver SABR: Improve CBCT, treat more accurately.

Pierrard J, Audag N, Massih CA, Garcia MA, Moreno EA, Colot A, Jardinet S, Mony R, Nevez Marques AF, Servaes L, Tison T, den Bossche VV, Etume AW, Zouheir L, Ooteghem GV

pubmed logopapersJul 1 2025
Cone-beam computed tomography (CBCT) for image-guided radiotherapy (IGRT) during liver stereotactic ablative radiotherapy (SABR) is degraded by respiratory motion artefacts, potentially jeopardising treatment accuracy. Mechanically assisted non-invasive ventilation-induced breath-hold (MANIV-BH) can reduce these artefacts. This study compares MANIV-BH and free-breathing CBCTs regarding image quality, IGRT variability, automatic registration accuracy, and deep-learning auto-segmentation performance. Liver SABR CBCTs were presented blindly to 14 operators: 25 patients with FB and 25 with MANIV-BH. They rated CBCT quality and IGRT ease (rigid registration with planning CT). Interoperator IGRT variability was compared between FB and MANIV-BH. Automatic gross tumour volume (GTV) mapping accuracy was compared using automatic rigid registration and image-guided deformable registration. Deep-learning organ-at-risk (OAR) auto-segmentation was rated by an operator, who recorded the time dedicated for manual correction of these volumes. MANIV-BH significantly improved CBCT image quality ("Excellent"/"Good": 83.4 % versus 25.4 % with FB, p < 0.001), facilitated IGRT ("Very easy"/"Easy": 68.0 % versus 38.9 % with FB, p < 0.001), and reduced IGRT variability, particularly for trained operators (overall variability of 3.2 mm versus 4.6 mm with FB, p = 0.010). MANIV-BH improved deep-learning auto-segmentation performance (80.0 % rated "Excellent"/"Good" versus 4.0 % with FB, p < 0.001), and reduced median manual correction time by 54.2 % compared to FB (p < 0.001). However, automatic GTV mapping accuracy was not significantly different between MANIV-BH and FB. In liver SABR, MANIV-BH significantly improves CBCT quality, reduces interoperator IGRT variability, and enhances OAR auto-segmentation. Beyond being safe and effective for respiratory motion mitigation, MANIV increases accuracy during treatment delivery, although its implementation requires resources.

Intermuscular adipose tissue and lean muscle mass assessed with MRI in people with chronic back pain in Germany: a retrospective observational study.

Ziegelmayer S, Häntze H, Mertens C, Busch F, Lemke T, Kather JN, Truhn D, Kim SH, Wiestler B, Graf M, Kader A, Bamberg F, Schlett CL, Weiss JB, Schulz-Menger J, Ringhof S, Can E, Pischon T, Niendorf T, Lammert J, Schulze M, Keil T, Peters A, Hadamitzky M, Makowski MR, Adams L, Bressem K

pubmed logopapersJul 1 2025
Chronic back pain (CBP) affects over 80 million people in Europe, contributing to substantial healthcare costs and disability. Understanding modifiable risk factors, such as muscle composition, may aid in prevention and treatment. This study investigates the association between lean muscle mass (LMM) and intermuscular adipose tissue (InterMAT) with CBP using noninvasive whole-body magnetic resonance imaging (MRI). This cross-sectional analysis used whole-body MRI data from 30,868 participants in the German National Cohort (NAKO), collected between 1 May 2014 and 1 September 2019. CBP was defined as back pain persisting >3 months. LMM and InterMAT were quantified via MRI-based muscle segmentations using a validated deep learning model. Associations were analyzed using mixed logistic regression, adjusting for age, sex, diabetes, dyslipidemia, osteoporosis, osteoarthritis, physical activity, and study site. Among 27,518 participants (n = 12,193/44.3% female, n = 14,605/55.7% male; median age 49 years IQR 41; 57), 21.8% (n = 6003; n = 2999/50.0% female, n = 3004/50% male; median age 53 years IQR 46; 60) reported CBP, compared to 78.2% (n = 21,515; n = 9194/42.7% female, n = 12,321/57.3% male; median age 48 years IQR 39; 56) who did not. CBP prevalence was highest in those with low (<500 MET min/week) or high (>5000 MET min/week) self-reported physical activity levels (24.6% (n = 10,892) and 22.0% (n = 3800), respectively) compared to moderate (500-5000 MET min/week) levels (19.4% (n = 12,826); p < 0.0001). Adjusted analyses revealed that a higher InterMAT (OR 1.22 per 2-unit Z-score; 95% CI 1.13-1.30; p < 0.0001) was associated with an increased likelihood of chronic back pain (CBP), whereas higher lean muscle mass (LMM) (OR 0.87 per 2-unit Z-score; 95% CI 0.79-0.95; p = 0.003) was associated with a reduced likelihood of CBP. Stratified analyses confirmed these associations persisted in individuals with osteoarthritis (OA-CBP LMM: 22.9 cm<sup>3</sup>/kg/m; InterMAT: 7.53% vs OA-No CBP LMM: 24.3 cm<sup>3</sup>/kg/m; InterMAT: 6.96% both p < 0.0001) and osteoporosis (OP-CBP LMM: 20.9 cm<sup>3</sup>/kg/m; InterMAT: 8.43% vs OP-No CBP LMM: 21.3 cm<sup>3</sup>/kg/m; InterMAT: 7.9% p = 0.16 and p = 0.0019). Higher pain intensity (Pain Intensity Numerical Rating Scale ≥4) correlated with lower LMM (2-unit Z-score deviation = OR, 0.63; 95% CI, 0.57-0.70; p < 0.0001) and higher InterMAT (2-unit Z-score deviation = OR, 1.22; 95% CI, 1.13-1.30; p < 0.0001), independent of physical activity, osteoporosis and osteoarthritis. This large, population-based study highlights the associations of InterMAT and LMM with CBP. Given the limitations of the cross-sectional design, our findings can be seen as an impetus for further causal investigations within a broader, multidisciplinary framework to guide future research toward improved prevention and treatment. The NAKO is funded by the Federal Ministry of Education and Research (BMBF) [project funding reference numbers: 01ER1301A/B/C, 01ER1511D, 01ER1801A/B/C/D and 01ER2301A/B/C], federal states of Germany and the Helmholtz Association, the participating universities and the institutes of the Leibniz Association.

A Deep Learning Model Based on High-Frequency Ultrasound Images for Classification of Different Stages of Liver Fibrosis.

Zhang L, Tan Z, Li C, Mou L, Shi YL, Zhu XX, Luo Y

pubmed logopapersJul 1 2025
To develop a deep learning model based on high-frequency ultrasound images to classify different stages of liver fibrosis in chronic hepatitis B patients. This retrospective multicentre study included chronic hepatitis B patients who underwent both high-frequency and low-frequency liver ultrasound examinations between January 2014 and August 2024 at six hospitals. Paired images were employed to train the HF-DL and the LF-DL models independently. Three binary tasks were conducted: (1) Significant Fibrosis (S0-1 vs. S2-4); (2) Advanced Fibrosis (S0-2 vs. S3-4); (3) Cirrhosis (S0-3 vs. S4). Hepatic pathological results constituted the ground truth for algorithm development and evaluation. The diagnostic value of high-frequency and low-frequency liver ultrasound images was compared across commonly used CNN networks. The HF-DL model performance was compared against the LF-DL model, FIB-4, APRI, and with SWE (external test set). The calibration of models was plotted. The clinical benefits were calculated. Subgroup analysis for patients with different characteristics (BMI, ALT, inflammation level, alcohol consumption level) was conducted. The HF-DL model demonstrated consistently superior diagnostic performance across all stages of liver fibrosis compared to the LF-DL model, FIB-4, APRI and SWE, particularly in classifying advanced fibrosis (0.93 [95% CI 0.90-0.95], 0.93 [95% CI 0.89-0.96], p < 0.01). The HF-DL model demonstrates significantly improved performance in both target patient detection and negative population exclusion. The HF-DL model based on high-frequency ultrasound images outperforms other routinely used non-invasive modalities across different stages of liver fibrosis, particularly in advanced fibrosis, and may offer considerable clinical value.
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