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Objective assessment of diagnostic image quality in CT scans: what radiologists and researchers need to know.

Hoeijmakers EJI, Martens B, Wildberger JE, Flohr TG, Jeukens CRLPN

pubmed logopapersJul 10 2025
Quantifying diagnostic image quality (IQ) is not straightforward but essential for optimizing the balance between IQ and radiation dose, and for ensuring consistent high-quality images in CT imaging. This review provides a comprehensive overview of advanced objective reference-free IQ assessment methods for CT scans, beyond standard approaches. A literature search was performed in PubMed and Web of Science up to June 2024 to identify studies using advanced objective image quality methods on clinical CT scans. Only reference-free methods, which do not require a predefined reference image, were included. Traditional methods relying on the standard deviation of the Hounsfield units, the signal-to-noise ratio or contrast-to-noise ratio, all within a manually selected region-of-interest, were excluded. Eligible results were categorized by IQ metric (i.e., noise, contrast, spatial resolution and other) and assessment method (manual, automated, and artificial intelligence (AI)-based). Thirty-five studies were included that proposed or employed reference-free IQ methods, identifying 12 noise assessment methods, 4 contrast assessment methods, 14 spatial resolution assessment methods and 7 others, based on manual, automated or AI-based approaches. This review emphasizes the transition from manual to fully automated approaches for IQ assessment, including the potential of AI-based methods, and it provides a reference tool for researchers and radiologists who need to make a well-considered choice in how to evaluate IQ in CT imaging. This review examines the challenge of quantifying diagnostic CT image quality, essential for optimization studies and ensuring consistent high-quality images, by providing an overview of objective reference-free diagnostic image quality assessment methods beyond standard methods. Quantifying diagnostic CT image quality remains a key challenge. This review summarizes objective diagnostic image quality assessment techniques beyond standard metrics. A decision tree is provided to help select optimal image quality assessment techniques.

Deformable detection transformers for domain adaptable ultrasound localization microscopy with robustness to point spread function variations.

Gharamaleki SK, Helfield B, Rivaz H

pubmed logopapersJul 10 2025
Super-resolution imaging has emerged as a rapidly advancing field in diagnostic ultrasound. Ultrasound Localization Microscopy (ULM) achieves sub-wavelength precision in microvasculature imaging by tracking gas microbubbles (MBs) flowing through blood vessels. However, MB localization faces challenges due to dynamic point spread functions (PSFs) caused by harmonic and sub-harmonic emissions, as well as depth-dependent PSF variations in ultrasound imaging. Additionally, deep learning models often struggle to generalize from simulated to in vivo data due to significant disparities between the two domains. To address these issues, we propose a novel approach using the DEformable DEtection TRansformer (DE-DETR). This object detection network tackles object deformations by utilizing multi-scale feature maps and incorporating a deformable attention module. We further refine the super-resolution map by employing a KDTree algorithm for efficient MB tracking across consecutive frames. We evaluated our method using both simulated and in vivo data, demonstrating improved precision and recall compared to current state-of-the-art methodologies. These results highlight the potential of our approach to enhance ULM performance in clinical applications.

PediMS: A Pediatric Multiple Sclerosis Lesion Segmentation Dataset.

Popa M, Vișa GA, Șofariu CR

pubmed logopapersJul 10 2025
Multiple Sclerosis (MS) is a chronic autoimmune disease that primarily affects the central nervous system and is predominantly diagnosed in adults, making pediatric cases rare and underrepresented in medical research. This paper introduces the first publicly available MRI dataset specifically dedicated to pediatric multiple sclerosis lesion segmentation. The dataset comprises longitudinal MRI scans from 9 pediatric patients, each with between one and six timepoints, with a total of 28 MRI scans. It includes T1-weighted (MPRAGE), T2-weighted, and FLAIR sequences. Additionally, it provides clinical data and initial symptoms for each patient, offering valuable insights into disease progression. Lesion segmentation was performed by senior experts, ensuring high-quality annotations. To demonstrate the dataset's reliability and utility, we evaluated two deep learning models, achieving competitive segmentation performance. This dataset aims to advance research in pediatric MS, improve lesion segmentation models, and contribute to federated learning approaches.

A two-stage dual-task learning strategy for early prediction of pathological complete response to neoadjuvant chemotherapy for breast cancer using dynamic contrast-enhanced magnetic resonance images.

Jing B, Wang J

pubmed logopapersJul 10 2025
Early prediction of treatment response can facilitate personalized treatment for breast cancer patients. Studies on the I-SPY 2 clinical trial demonstrate that multi-time point dynamic contrast-enhanced magnetic resonance (DCEMR) imaging improves the accuracy of predicting pathological complete response (pCR) to chemotherapy. However, previous image-based prediction models usually rely on mid- or post-treatment images to ensure the accuracy of prediction, which may outweigh the benefit of response-based adaptive treatment strategy. Accurately predicting the pCR at the early time point is desired yet remains challenging. To improve prediction accuracy at the early time point of treatment, we proposed a two-stage dual-task learning strategy to train a deep neural network for early prediction using only early-treatment data. We developed and evaluated our proposed method using the I-SPY 2 dataset, which included DCEMR images acquired at three time points: pretreatment (T0), after 3 weeks (T1) and 12 weeks of treatment (T2). At the first stage, we trained a convolutional long short-term memory (LSTM) model using all the data to predict pCR and extract the latent space image representation at T2. At the second stage, we trained a dual-task model to simultaneously predict pCR and the image representation at T2 using images from T0 and T1. This allowed us to predict pCR earlier without using images from T2. By using the conventional single-stage single-task strategy, the area under the receiver operating characteristic curve (AUROC) was 0.799. By using the proposed two-stage dual-task learning strategy, the AUROC was improved to 0.820. Our proposed two-stage dual-task learning strategy can improve model performance significantly (p=0.0025) for predicting pCR at the early time point (3rd week) of neoadjuvant chemotherapy for high-risk breast cancer patients. The early prediction model can potentially help physicians to intervene early and develop personalized plans at the early stage of chemotherapy.

Predicting Thoracolumbar Vertebral Osteoporotic Fractures: Value Assessment of Chest CT-Based Machine Learning.

Chen Y, Che M, Yang H, Yu M, Yang Z, Qin J

pubmed logopapersJul 10 2025
To assess the value of a chest CT-based machine learning model in predicting osteoporotic vertebral fractures (OVFs) of the thoracolumbar vertebral bodies. We monitored 8910 patients aged ≥50 who underwent chest CT (2021-2024), identifying 54 incident OVFs cases. Using propensity score matching, 108 controls were selected. The 162 patients were randomly assigned to training (n=113) and testing (n=49) cohorts. Clinical models were developed through logistic regression. Radiomics features were extracted from the thoracolumbar vertebral bodies (T11-L2), with top 10 features selected via minimum-redundancy maximum-relevancy and the least absolute shrinkage and selection operator to construct a Radscore model. Nomogram model was established combining clinical and radiomics features, evaluated using receiver operating characteristic curves, decision curve analysis (DCA) and calibration plots. Volumetric bone mineral density (vBMD) (OR=0.95, 95%CI=0.93-0.97) and hemoglobin (HGB) (OR=0.96, 95%CI=0.94-0.98) were selected as independent risk factors for clinical model. From 2288 radiomics features, 10 were selected for Radscore calculation. The Nomogram model (Radscore + vBMD + HGB) achieved area under the curve (AUC) of 0.938/0.906 in training/testing cohorts, outperforming both Radscore (AUC=0.902/0.871) and clinical (AUC=0.802/0.820) models. DCA and calibration plots confirmed the Nomogram model's superior prediction capability. Nomogram model combined with radiomics and clinical features has high predictive performance, and its predictive results for thoracolumbar OVFs can provide reference for clinical decision making.

Hierarchical deep learning system for orbital fracture detection and trap-door classification on CT images.

Oku H, Nakamura Y, Kanematsu Y, Akagi A, Kinoshita S, Sotozono C, Koizumi N, Watanabe A, Okumura N

pubmed logopapersJul 10 2025
To develop and evaluate a hierarchical deep learning system that detects orbital fractures on computed tomography (CT) images and classifies them as depressed or trap-door types. A retrospective diagnostic accuracy study analyzing CT images from patients with confirmed orbital fractures. We collected CT images from 686 patients with orbital fractures treated at a single institution (2010-2025), resulting in 46,013 orbital CT slices. After preprocessing, 7809 slices were selected as regions of interest and partitioned into training (6508 slices) and test (1301 slices) datasets. Our hierarchical approach consisted of a first-stage classifier (YOLOv8) for fracture detection and a second-stage classifier (Vision Transformer) for distinguishing depressed from trap-door fractures. Performance was evaluated at both slice and patient levels, focusing on accuracy, sensitivity, specificity, and area under the receiver operating characteristic curve (AUC-ROC) at both slice and patient levels. For fracture detection, YOLOv8 achieved a slice-level sensitivity of 80.4 % and specificity of 79.2 %, with patient-level performance improving to 94.7 % sensitivity and 90.0 % specificity. For fracture classification, Vision Transformer demonstrated a slice-level sensitivity of 91.5 % and specificity of 83.5 % for trap-door and depressed fractures, with patient-level metrics of 100 % sensitivity and 88.9 % specificity. The complete system correctly identified 18/20 no-fracture cases, 35/40 depressed fracture cases, and 15/17 trap-door fracture cases. Our hierarchical deep learning system effectively detects orbital fractures and distinguishes between depressed and trap-door types with high accuracy. This approach could aid in the timely identification of trap-door fractures requiring urgent surgical intervention, particularly in settings lacking specialized expertise.

Depth-Sequence Transformer (DST) for Segment-Specific ICA Calcification Mapping on Non-Contrast CT

Xiangjian Hou, Ebru Yaman Akcicek, Xin Wang, Kazem Hashemizadeh, Scott Mcnally, Chun Yuan, Xiaodong Ma

arxiv logopreprintJul 10 2025
While total intracranial carotid artery calcification (ICAC) volume is an established stroke biomarker, growing evidence shows this aggregate metric ignores the critical influence of plaque location, since calcification in different segments carries distinct prognostic and procedural risks. However, a finer-grained, segment-specific quantification has remained technically infeasible. Conventional 3D models are forced to process downsampled volumes or isolated patches, sacrificing the global context required to resolve anatomical ambiguity and render reliable landmark localization. To overcome this, we reformulate the 3D challenge as a \textbf{Parallel Probabilistic Landmark Localization} task along the 1D axial dimension. We propose the \textbf{Depth-Sequence Transformer (DST)}, a framework that processes full-resolution CT volumes as sequences of 2D slices, learning to predict $N=6$ independent probability distributions that pinpoint key anatomical landmarks. Our DST framework demonstrates exceptional accuracy and robustness. Evaluated on a 100-patient clinical cohort with rigorous 5-fold cross-validation, it achieves a Mean Absolute Error (MAE) of \textbf{0.1 slices}, with \textbf{96\%} of predictions falling within a $\pm1$ slice tolerance. Furthermore, to validate its architectural power, the DST backbone establishes the best result on the public Clean-CC-CCII classification benchmark under an end-to-end evaluation protocol. Our work delivers the first practical tool for automated segment-specific ICAC analysis. The proposed framework provides a foundation for further studies on the role of location-specific biomarkers in diagnosis, prognosis, and procedural planning. Our code will be made publicly available.

HNOSeg-XS: Extremely Small Hartley Neural Operator for Efficient and Resolution-Robust 3D Image Segmentation

Ken C. L. Wong, Hongzhi Wang, Tanveer Syeda-Mahmood

arxiv logopreprintJul 10 2025
In medical image segmentation, convolutional neural networks (CNNs) and transformers are dominant. For CNNs, given the local receptive fields of convolutional layers, long-range spatial correlations are captured through consecutive convolutions and pooling. However, as the computational cost and memory footprint can be prohibitively large, 3D models can only afford fewer layers than 2D models with reduced receptive fields and abstract levels. For transformers, although long-range correlations can be captured by multi-head attention, its quadratic complexity with respect to input size is computationally demanding. Therefore, either model may require input size reduction to allow more filters and layers for better segmentation. Nevertheless, given their discrete nature, models trained with patch-wise training or image downsampling may produce suboptimal results when applied on higher resolutions. To address this issue, here we propose the resolution-robust HNOSeg-XS architecture. We model image segmentation by learnable partial differential equations through the Fourier neural operator which has the zero-shot super-resolution property. By replacing the Fourier transform by the Hartley transform and reformulating the problem in the frequency domain, we created the HNOSeg-XS model, which is resolution robust, fast, memory efficient, and extremely parameter efficient. When tested on the BraTS'23, KiTS'23, and MVSeg'23 datasets with a Tesla V100 GPU, HNOSeg-XS showed its superior resolution robustness with fewer than 34.7k model parameters. It also achieved the overall best inference time (< 0.24 s) and memory efficiency (< 1.8 GiB) compared to the tested CNN and transformer models.

An Enhanced Privacy-preserving Federated Few-shot Learning Framework for Respiratory Disease Diagnosis

Ming Wang, Zhaoyang Duan, Dong Xue, Fangzhou Liu, Zhongheng Zhang

arxiv logopreprintJul 10 2025
The labor-intensive nature of medical data annotation presents a significant challenge for respiratory disease diagnosis, resulting in a scarcity of high-quality labeled datasets in resource-constrained settings. Moreover, patient privacy concerns complicate the direct sharing of local medical data across institutions, and existing centralized data-driven approaches, which rely on amounts of available data, often compromise data privacy. This study proposes a federated few-shot learning framework with privacy-preserving mechanisms to address the issues of limited labeled data and privacy protection in diagnosing respiratory diseases. In particular, a meta-stochastic gradient descent algorithm is proposed to mitigate the overfitting problem that arises from insufficient data when employing traditional gradient descent methods for neural network training. Furthermore, to ensure data privacy against gradient leakage, differential privacy noise from a standard Gaussian distribution is integrated into the gradients during the training of private models with local data, thereby preventing the reconstruction of medical images. Given the impracticality of centralizing respiratory disease data dispersed across various medical institutions, a weighted average algorithm is employed to aggregate local diagnostic models from different clients, enhancing the adaptability of a model across diverse scenarios. Experimental results show that the proposed method yields compelling results with the implementation of differential privacy, while effectively diagnosing respiratory diseases using data from different structures, categories, and distributions.

Understanding Dataset Bias in Medical Imaging: A Case Study on Chest X-rays

Ethan Dack, Chengliang Dai

arxiv logopreprintJul 10 2025
Recent works have revisited the infamous task ``Name That Dataset'', demonstrating that non-medical datasets contain underlying biases and that the dataset origin task can be solved with high accuracy. In this work, we revisit the same task applied to popular open-source chest X-ray datasets. Medical images are naturally more difficult to release for open-source due to their sensitive nature, which has led to certain open-source datasets being extremely popular for research purposes. By performing the same task, we wish to explore whether dataset bias also exists in these datasets. To extend our work, we apply simple transformations to the datasets, repeat the same task, and perform an analysis to identify and explain any detected biases. Given the importance of AI applications in medical imaging, it's vital to establish whether modern methods are taking shortcuts or are focused on the relevant pathology. We implement a range of different network architectures on the datasets: NIH, CheXpert, MIMIC-CXR and PadChest. We hope this work will encourage more explainable research being performed in medical imaging and the creation of more open-source datasets in the medical domain. Our code can be found here: https://github.com/eedack01/x_ray_ds_bias.
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