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A Dual-Energy Computed Tomography Guided Intelligent Radiation Therapy Platform.

Wen N, Zhang Y, Zhang H, Zhang M, Zhou J, Liu Y, Liao C, Jia L, Zhang K, Chen J

pubmed logopapersJun 1 2025
The integration of advanced imaging and artificial intelligence technologies in radiation therapy has revolutionized cancer treatment by enhancing precision and adaptability. This study introduces a novel dual-energy computed tomography (DECT) guided intelligent radiation therapy (DEIT) platform designed to streamline and optimize the radiation therapy process. The DEIT system combines DECT, a newly designed dual-layer multileaf collimator, deep learning algorithms for auto-segmentation, and automated planning and quality assurance capabilities. The DEIT system integrates an 80-slice computed tomography (CT) scanner with an 87 cm bore size, a linear accelerator delivering 4 photon and 5 electron energies, and a flat panel imager optimized for megavoltage (MV) cone beam CT acquisition. A comprehensive evaluation of the system's accuracy was conducted using end-to-end tests. Virtual monoenergetic CT images and electron density images of the DECT were generated and compared on both phantom and patient. The system's auto-segmentation algorithms were tested on 5 cases for each of the 99 organs at risk, and the automated optimization and planning capabilities were evaluated on clinical cases. The DEIT system demonstrated systematic errors of less than 1 mm for target localization. DECT reconstruction showed electron density mapping deviations ranging from -0.052 to 0.001, with stable Hounsfield unit consistency across monoenergetic levels above 60 keV, except for high-Z materials at lower energies. Auto-segmentation achieved dice similarity coefficients above 0.9 for most organs with an inference time of less than 2 seconds. Dose-volume histogram comparisons showed improved dose conformity indices and reduced doses to critical structures in auto-plans compared to manual plans across various clinical cases. In addition, high gamma passing rates at 2%/2 mm in both 2-dimensional (above 97%) and 3-dimensional (above 99%) in vivo analyses further validate the accuracy and reliability of treatment plans. The DEIT platform represents a viable solution for radiation treatment. The DEIT system uses artificial intelligence-driven automation, real-time adjustments, and CT imaging to enhance the radiation therapy process, improving efficiency and flexibility.

TTGA U-Net: Two-stage two-stream graph attention U-Net for hepatic vessel connectivity enhancement.

Zhao Z, Li W, Ding X, Sun J, Xu LX

pubmed logopapersJun 1 2025
Accurate segmentation of hepatic vessels is pivotal for guiding preoperative planning in ablation surgery utilizing CT images. While non-contrast CT images often lack observable vessels, we focus on segmenting hepatic vessels within preoperative MR images. However, the vascular structures depicted in MR images are susceptible to noise, leading to challenges in connectivity. To address this issue, we propose a two-stage two-stream graph attention U-Net (i.e., TTGA U-Net) for hepatic vessel segmentation. Specifically, the first-stage network employs a CNN or Transformer-based architecture to preliminarily locate the vessel position, followed by an improved superpixel segmentation method to generate graph structures based on the positioning results. The second-stage network extracts graph node features through two parallel branches of a graph spatial attention network (GAT) and a graph channel attention network (GCT), employing self-attention mechanisms to balance these features. The graph pooling operation is utilized to aggregate node information. Moreover, we introduce a feature fusion module instead of skip connections to merge the two graph attention features, providing additional information to the decoder effectively. We establish a novel well-annotated high-quality MR image dataset for hepatic vessel segmentation and validate the vessel connectivity enhancement network's effectiveness on this dataset and the public dataset 3D IRCADB. Experimental results demonstrate that our TTGA U-Net outperforms state-of-the-art methods, notably enhancing vessel connectivity.

IM- LTS: An Integrated Model for Lung Tumor Segmentation using Neural Networks and IoMT.

J J, Haw SC, Palanichamy N, Ng KW, Thillaigovindhan SK

pubmed logopapersJun 1 2025
In recent days, Internet of Medical Things (IoMT) and Deep Learning (DL) techniques are broadly used in medical data processing in decision-making. A lung tumour, one of the most dangerous medical diseases, requires early diagnosis with a higher precision rate. With that concern, this work aims to develop an Integrated Model (IM- LTS) for Lung Tumor Segmentation using Neural Networks (NN) and the Internet of Medical Things (IoMT). The model integrates two architectures, MobileNetV2 and U-NET, for classifying the input lung data. The input CT lung images are pre-processed using Z-score Normalization. The semantic features of lung images are extracted based on texture, intensity, and shape to provide information to the training network.•In this work, the transfer learning technique is incorporated, and the pre-trained NN was used as an encoder for the U-NET model for segmentation. Furthermore, Support Vector Machine is used here to classify input lung data as benign and malignant.•The results are measured based on the metrics such as, specificity, sensitivity, precision, accuracy and F-Score, using the data from benchmark datasets. Compared to the existing lung tumor segmentation and classification models, the proposed model provides better results and evidence for earlier disease diagnosis.

Association of Sarcopenia With Toxicity and Survival in Patients With Lung Cancer, a Multi-Institutional Study With External Dataset Validation.

Saraf A, He J, Shin KY, Weiss J, Awad MM, Gainor J, Kann BH, Christiani DC, Aerts HJWL, Mak RH

pubmed logopapersJun 1 2025
Sarcopenia is associated with worse survival in non-small cell lung cancer (NSCLC), but less studied in association with toxicity. Here, we investigated the association between imaging-assessed sarcopenia with toxicity in patients with NSCLC. We analyzed a "chemoradiation" cohort (n = 318) of patients with NSCLC treated with chemoradiation, and an external validation "chemo-surgery" cohort (n = 108) who were treated with chemotherapy and surgery from 2002 to 2013 at a different institution. A deep-learning pipeline utilized pretreatment computed tomography scans to estimate SM area at the third lumbar vertebral level. Sarcopenia was defined by dichotomizing SM index, (SM adjusted for height and sex). Primary endpoint was NCI CTCAE v5.0 grade 3 to 5 (G3-5) toxicity within 21-days of first chemotherapy cycle. Multivariable analyses (MVA) of toxicity endpoints with sarcopenia and baseline characteristics were performed by logistic regression, and overall survival (OS) was analyzed using Cox regression. Sarcopenia was identified in 36% and 36% of patients in the chemoradiation and chemo-surgery cohorts, respectively. On MVA, sarcopenia was associated with worse G3-5 toxicity in chemoradiation (HR 2.00, P < .01) and chemo-surgery cohorts (HR 2.95, P = .02). In the chemoradiation cohort, worse OS was associated with G3-5 toxicity (HR 1.42, P = .02) but not sarcopenia on MVA. In chemo-surgery cohort, worse OS was associated with sarcopenia (HR 2.03, P = .02) but not G3-5 toxicity on MVA. Sarcopenia, assessed by an automated deep-learning system, was associated with worse toxicity and survival outcomes in patients with NSCLC. Sarcopenia can be utilized to tailor treatment decisions to optimize adverse events and survival.

Artificial intelligence driven plaque characterization and functional assessment from CCTA using OCT-based automation: A prospective study.

Han J, Wang Z, Chen T, Liu S, Tan J, Sun Y, Feng L, Zhang D, Ma L, Liu H, Tao H, Fang C, Yu H, Zeng M, Jia H, Yu B

pubmed logopapersJun 1 2025
We aimed to develop and validate an Artificial Intelligence (AI) model that leverages CCTA and optical coherence tomography (OCT) images for automated analysis of plaque characteristics and coronary function. A total of 100 patients who underwent invasive coronary angiography, OCT, and CCTA before discharge were included in this study. The data were randomly divided into a training set (80 %) and a test set (20 %). The training set, comprising 21,471 tomography images, was used to train a deep-learning convolutional neural network. Subsequently, the AI model was integrated with flow reserve score calculation software developed by Ruixin Medical. The results from the test set demonstrated excellent agreement between the AI model and OCT analysis for calcified plaque (McNemar test, p = 0.683), non-calcified plaque (McNemar test, p = 0.752), mixed plaque (McNemar test, p = 1.000), and low-attenuation plaque (McNemar test, p = 1.000). Additionally, there was excellent agreement for deep learning-derived minimum lumen diameter (intraclass correlation coefficient [ICC] 0.91, p < 0.001), mean vessel diameter (ICC 0.88, p < 0.001), and percent diameter stenosis (ICC 0.82, p < 0.001). In diagnosing >50 % coronary stenosis, the diagnostic accuracy of the AI model surpassed that of conventional CCTA (AUC 0.98 vs. 0.76, p = 0.008). When compared with quantitative flow fraction, there was excellent agreement between QFR and AI-derived CT-FFR (ICC 0.745, p < 0.0001). Our AI model effectively provides automated analysis of plaque characteristics from CCTA images, with the analysis results showing strong agreement with OCT findings. Moreover, the CT-FFR automatically analyzed by the AI model exhibits high consistency with QFR derived from coronary angiography.

Side-to-side differences in hip bone mineral density in patients with unilateral hip osteoarthritis.

Uemura K, Kono S, Takashima K, Tamura K, Higuchi R, Mae H, Nakamura N, Otake Y, Sato Y, Sugano N, Okada S, Hamada H

pubmed logopapersJun 1 2025
Accurately evaluating bone mineral density (BMD) in patients with unilateral hip osteoarthritis (OA) is crucial for diagnosing osteoporosis and selecting implants for hip arthroplasty. Our goal was to measure the BMD differences between sides, examine contributing factors, and identify the optimal side for BMD assessment in these patients. We analyzed 108 women with unilateral hip OA. Bilateral hip BMD was assessed automatically through quantitative CT (QCT) utilizing a validated, deep-learning-based approach. We evaluated BMD variations between the OA and healthy hips across total, neck, and distal regions. To determine their contributions, we analyzed factors, including patient demographics, Crowe classification, Bombelli classification, knee OA status, hip functional score, and gluteal muscle volume and density. Furthermore, we examined how side-to-side BMD differences influenced osteoporosis diagnosis using T-scores based on QCT. The average BMD on the OA side was 6.9 % lower in the total region, 14.5 % higher in the neck region, and 9.4 % lower in the distal region than on the healthy side. Contributing factors to the reduced BMD in the OA hip included younger age, Bombelli classification (atrophic type), and significant gluteal muscle atrophy. Diagnoses from the OA side revealed lower sensitivity (61 %) than those from the healthy side (88 %). Analysis on one side alone yields a more precise osteoporosis diagnosis from the healthy side. Nonetheless, bilateral BMD assessment remains crucial, particularly in younger individuals and those with atrophic OA types. Although based on QCT, our findings support bilateral analysis by dual-energy X-ray absorptiometry for these patients.

SSAT-Swin: Deep Learning-Based Spinal Ultrasound Feature Segmentation for Scoliosis Using Self-Supervised Swin Transformer.

Zhang C, Zheng Y, McAviney J, Ling SH

pubmed logopapersJun 1 2025
Scoliosis, a 3-D spinal deformity, requires early detection and intervention. Ultrasound curve angle (UCA) measurement using ultrasound images has emerged as a promising diagnostic tool. However, calculating the UCA directly from ultrasound images remains challenging due to low contrast, high noise, and irregular target shapes. Accurate segmentation results are therefore crucial to enhance image clarity and precision prior to UCA calculation. We propose the SSAT-Swin model, a transformer-based multi-class segmentation framework designed for ultrasound image analysis in scoliosis diagnosis. The model integrates a boundary-enhancement module in the decoder and a channel attention module in the skip connections. Additionally, self-supervised proxy tasks are used during pre-training on 1,170 images, followed by fine-tuning on 109 image-label pairs. The SSAT-Swin achieved Dice scores of 85.6% and Jaccard scores of 74.5%, with a 92.8% scoliosis bone feature detection rate, outperforming state-of-the-art models. Self-supervised learning enhances the model's ability to capture global context information, making it well-suited for addressing the unique challenges of ultrasound images, ultimately advancing scoliosis assessment through more accurate segmentation.

Semantic segmentation for individual thigh skeletal muscles of athletes on magnetic resonance images.

Kasahara J, Ozaki H, Matsubayashi T, Takahashi H, Nakayama R

pubmed logopapersJun 1 2025
The skeletal muscles that athletes should train vary depending on their discipline and position. Therefore, individual skeletal muscle cross-sectional area assessment is important in the development of training strategies. To measure the cross-sectional area of skeletal muscle, manual segmentation of each muscle is performed using magnetic resonance (MR) imaging. This task is time-consuming and requires significant effort. Additionally, interobserver variability can sometimes be problematic. The purpose of this study was to develop an automated computerized method for semantic segmentation of individual thigh skeletal muscles from MR images of athletes. Our database consisted of 697 images from the thighs of 697 elite athletes. The images were randomly divided into a training dataset (70%), a validation dataset (10%), and a test dataset (20%). A label image was generated for each image by manually annotating 15 object classes: 12 different skeletal muscles, fat, bones, and vessels and nerves. Using the validation dataset, DeepLab v3+ was chosen from three different semantic segmentation models as a base model for segmenting individual thigh skeletal muscles. The feature extractor in DeepLab v3+ was also optimized to ResNet50. The mean Jaccard index and Dice index for the proposed method were 0.853 and 0.916, respectively, which were significantly higher than those from conventional DeepLab v3+ (Jaccard index: 0.810, p < .001; Dice index: 0.887, p < .001). The proposed method achieved a mean area error for 15 objective classes of 3.12%, useful in the assessment of skeletal muscle cross-sectional area from MR images.

Standardized pancreatic MRI-T1 measurement methods: comparison between manual measurement and a semi-automated pipeline with automatic quality control.

Triay Bagur A, Arya Z, Waddell T, Pansini M, Fernandes C, Counter D, Jackson E, Thomaides-Brears HB, Robson MD, Bulte DP, Banerjee R, Aljabar P, Brady M

pubmed logopapersJun 1 2025
Scanner-referenced T1 (srT1) is a method for measuring pancreas T1 relaxation time. The purpose of this multi-centre study is 2-fold: (1) to evaluate the repeatability of manual ROI-based analysis of srT1, (2) to validate a semi-automated measurement method with an automatic quality control (QC) module to identify likely discrepancies between automated and manual measurements. Pancreatic MRI scans from a scan-rescan cohort (46 subjects) were used to evaluate the repeatability of manual analysis. Seven hundred and eight scans from a longitudinal multi-centre study of 466 subjects were divided into training, internal validation (IV), and external validation (EV) cohorts. A semi-automated method for measuring srT1 using machine learning is proposed and compared against manual analysis on the validation cohorts with and without automated QC. Inter-operator agreement between manual ROI-based method and semi-automated method had low bias (3.8 ms or 0.5%) and limits of agreement [-36.6, 44.1] ms. There was good agreement between the 2 methods without automated QC (IV: 3.2 [-47.1, 53.5] ms, EV: -0.5 [-35.2, 34.2] ms). After QC, agreement on the IV set improved, was unchanged in the EV set, and the agreement in both was within inter-operator bounds (IV: -0.04 [-33.4, 33.3] ms, EV: -1.9 [-37.6, 33.7] ms). The semi-automated method improved scan-rescan agreement versus manual analysis (manual: 8.2 [-49.7, 66] ms, automated: 6.7 [-46.7, 60.1] ms). The semi-automated method for characterization of standardized pancreatic T1 using MRI has the potential to decrease analysis time while maintaining accuracy and improving scan-rescan agreement. We provide intra-operator, inter-operator, and scan-rescan agreement values for manual measurement of srT1, a standardized biomarker for measuring pancreas fibro-inflammation. Applying a semi-automated measurement method improves scan-rescan agreement and agrees well with manual measurements, while reducing human effort. Adding automated QC can improve agreement between manual and automated measurements. We describe a method for semi-automated, standardized measurement of pancreatic T1 (srT1), which includes automated quality control. Measurements show good agreement with manual ROI-based analysis, with comparable consistency to inter-operator performance.

Polygenic risk scores for rheumatoid arthritis and idiopathic pulmonary fibrosis and associations with RA, interstitial lung abnormalities, and quantitative interstitial abnormalities among smokers.

McDermott GC, Moll M, Cho MH, Hayashi K, Juge PA, Doyle TJ, Paudel ML, Kinney GL, Kronzer VL, Kim JS, O'Keeffe LA, Davis NA, Bernstein EJ, Dellaripa PF, Regan EA, Hunninghake GM, Silverman EK, Ash SY, San Jose Estepar R, Washko GR, Sparks JA

pubmed logopapersJun 1 2025
Genome-wide association studies (GWAS) facilitate construction of polygenic risk scores (PRSs) for rheumatoid arthritis (RA) and idiopathic pulmonary fibrosis (IPF). We investigated associations of RA and IPF PRSs with RA and high-resolution chest computed tomography (HRCT) parenchymal lung abnormalities. Participants in COPDGene, a prospective multicenter cohort of current/former smokers, had chest HRCT at study enrollment. Using genome-wide genotyping, RA and IPF PRSs were constructed using GWAS summary statistics. HRCT imaging underwent visual inspection for interstitial lung abnormalities (ILA) and quantitative CT (QCT) analysis using a machine-learning algorithm that quantified percentage of normal lung, interstitial abnormalities, and emphysema. RA was identified through self-report and DMARD use. We investigated associations of RA and IPF PRSs with RA, ILA, and QCT features using multivariable logistic and linear regression. We analyzed 9,230 COPDGene participants (mean age 59.6 years, 46.4 % female, 67.2 % non-Hispanic White, 32.8 % Black/African American). In non-Hispanic White participants, RA PRS was associated with RA diagnosis (OR 1.32 per unit, 95 %CI 1.18-1.49) but not ILA or QCT features. Among non-Hispanic White participants, IPF PRS was associated with ILA (OR 1.88 per unit, 95 %CI 1.52-2.32) and quantitative interstitial abnormalities (adjusted β=+0.50 % per unit, p = 7.3 × 10<sup>-8</sup>) but not RA. There were no statistically significant associations among Black/African American participants. RA and IPF PRSs were associated with their intended phenotypes among non-Hispanic White participants but performed poorly among Black/African American participants. PRS may have future application to risk stratify for RA diagnosis among patients with ILD or for ILD among patients with RA.
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