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Measuring the severity of knee osteoarthritis with an aberration-free fast line scanning Raman imaging system.

Jiao C, Ye J, Liao J, Li J, Liang J, He S

pubmed logopapersMay 15 2025
Osteoarthritis (OA) is a major cause of disability worldwide, with symptoms like joint pain, limited functionality, and decreased quality of life, potentially leading to deformity and irreversible damage. Chemical changes in joint tissues precede imaging alterations, making early diagnosis challenging for conventional methods like X-rays. Although Raman imaging provides detailed chemical information, it is time-consuming. This paper aims to achieve rapid osteoarthritis diagnosis and grading using a self-developed Raman imaging system combined with deep learning denoising and acceleration algorithms. Our self-developed aberration-corrected line-scanning confocal Raman imaging device acquires a line of Raman spectra (hundreds of points) per scan using a galvanometer or displacement stage, achieving spatial and spectral resolutions of 2 μm and 0.2 nm, respectively. Deep learning algorithms enhance the imaging speed by over 4 times through effective spectrum denoising and signal-to-noise ratio (SNR) improvement. By leveraging the denoising capabilities of deep learning, we are able to acquire high-quality Raman spectral data with a reduced integration time, thereby accelerating the imaging process. Experiments on the tibial plateau of osteoarthritis patients compared three excitation wavelengths (532, 671, and 785 nm), with 671 nm chosen for optimal SNR and minimal fluorescence. Machine learning algorithms achieved a 98 % accuracy in distinguishing articular from calcified cartilage and a 97 % accuracy in differentiating osteoarthritis grades I to IV. Our fast Raman imaging system, combining an aberration-corrected line-scanning confocal Raman imager with deep learning denoising, offers improved imaging speed and enhanced spectral and spatial resolutions. It enables rapid, label-free detection of osteoarthritis severity and can identify early compositional changes before clinical imaging, allowing precise grading and tailored treatment, thus advancing orthopedic diagnostics and improving patient outcomes.

The March to Harmonized Imaging Standards for Retinal Imaging.

Gim N, Ferguson AN, Blazes M, Lee CS, Lee AY

pubmed logopapersMay 11 2025
The adoption of standardized imaging protocols in retinal imaging is critical to overcoming challenges posed by fragmented data formats across devices and manufacturers. The lack of standardization hinders clinical interoperability, collaborative research, and the development of artificial intelligence (AI) models that depend on large, high-quality datasets. The Digital Imaging and Communication in Medicine (DICOM) standard offers a robust solution for ensuring interoperability in medical imaging. Although DICOM is widely utilized in radiology and cardiology, its adoption in ophthalmology remains limited. Retinal imaging modalities such as optical coherence tomography (OCT), fundus photography, and OCT angiography (OCTA) have revolutionized retinal disease management but are constrained by proprietary and non-standardized formats. This review underscores the necessity for harmonized imaging standards in ophthalmology, detailing DICOM standards for retinal imaging including ophthalmic photography (OP), OCT, and OCTA, and their requisite metadata information. Additionally, the potential of DICOM standardization for advancing AI applications in ophthalmology is explored. A notable example is the Artificial Intelligence Ready and Equitable Atlas for Diabetes Insights (AI-READI) dataset, the first publicly available standards-compliant DICOM retinal imaging dataset. This dataset encompasses diverse retinal imaging modalities, including color fundus photography, infrared, autofluorescence, OCT, and OCTA. By leveraging multimodal retinal imaging, AI-READI provides a transformative resource for studying diabetes and its complications, setting a blueprint for future datasets aimed at harmonizing imaging formats and enabling AI-driven breakthroughs in ophthalmology. Our manuscript also addresses challenges in retinal imaging for diabetic patients, retinal imaging-based AI applications for studying diabetes, and potential advancements in retinal imaging standardization.

Shortcut learning leads to sex bias in deep learning models for photoacoustic tomography.

Knopp M, Bender CJ, Holzwarth N, Li Y, Kempf J, Caranovic M, Knieling F, Lang W, Rother U, Seitel A, Maier-Hein L, Dreher KK

pubmed logopapersMay 9 2025
Shortcut learning has been identified as a source of algorithmic unfairness in medical imaging artificial intelligence (AI), but its impact on photoacoustic tomography (PAT), particularly concerning sex bias, remains underexplored. This study investigates this issue using peripheral artery disease (PAD) diagnosis as a specific clinical application. To examine the potential for sex bias due to shortcut learning in convolutional neural network (CNNs) and assess how such biases might affect diagnostic predictions, we created training and test datasets with varying PAD prevalence between sexes. Using these datasets, we explored (1) whether CNNs can classify the sex from imaging data, (2) how sex-specific prevalence shifts impact PAD diagnosis performance and underdiagnosis disparity between sexes, and (3) how similarly CNNs encode sex and PAD features. Our study with 147 individuals demonstrates that CNNs can classify the sex from calf muscle PAT images, achieving an AUROC of 0.75. For PAD diagnosis, models trained on data with imbalanced sex-specific disease prevalence experienced significant performance drops (up to 0.21 AUROC) when applied to balanced test sets. Additionally, greater imbalances in sex-specific prevalence within the training data exacerbated underdiagnosis disparities between sexes. Finally, we identify evidence of shortcut learning by demonstrating the effective reuse of learned feature representations between PAD diagnosis and sex classification tasks. CNN-based models trained on PAT data may engage in shortcut learning by leveraging sex-related features, leading to biased and unreliable diagnostic predictions. Addressing demographic-specific prevalence imbalances and preventing shortcut learning is critical for developing models in the medical field that are both accurate and equitable across diverse patient populations.

Deep compressed multichannel adaptive optics scanning light ophthalmoscope.

Park J, Hagan K, DuBose TB, Maldonado RS, McNabb RP, Dubra A, Izatt JA, Farsiu S

pubmed logopapersMay 9 2025
Adaptive optics scanning light ophthalmoscopy (AOSLO) reveals individual retinal cells and their function, microvasculature, and micropathologies in vivo. As compared to the single-channel offset pinhole and two-channel split-detector nonconfocal AOSLO designs, by providing multidirectional imaging capabilities, a recent generation of multidetector and (multi-)offset aperture AOSLO modalities has been demonstrated to provide critical information about retinal microstructures. However, increasing detection channels requires expensive optical components and/or critically increases imaging time. To address this issue, we present an innovative combination of machine learning and optics as an integrated technology to compressively capture 12 nonconfocal channel AOSLO images simultaneously. Imaging of healthy participants and diseased subjects using the proposed deep compressed multichannel AOSLO showed enhanced visualization of rods, cones, and mural cells with over an order-of-magnitude improvement in imaging speed as compared to conventional offset aperture imaging. To facilitate the adaptation and integration with other in vivo microscopy systems, we made optical design, acquisition, and computational reconstruction codes open source.

Application of Artificial Intelligence to Deliver Healthcare From the Eye.

Weinreb RN, Lee AY, Baxter SL, Lee RWJ, Leng T, McConnell MV, El-Nimri NW, Rhew DC

pubmed logopapersMay 8 2025
Oculomics is the science of analyzing ocular data to identify, diagnose, and manage systemic disease. This article focuses on prescreening, its use with retinal images analyzed by artificial intelligence (AI), to identify ocular or systemic disease or potential disease in asymptomatic individuals. The implementation of prescreening in a coordinated care system, defined as Healthcare From the Eye prescreening, has the potential to improve access, affordability, equity, quality, and safety of health care on a global level. Stakeholders include physicians, payers, policymakers, regulators and representatives from industry, government, and data privacy sectors. The combination of AI analysis of ocular data with automated technologies that capture images during routine eye examinations enables prescreening of large populations for chronic disease. Retinal images can be acquired during either a routine eye examination or in settings outside of eye care with readily accessible, safe, quick, and noninvasive retinal imaging devices. The outcome of such an examination can then be digitally communicated across relevant stakeholders in a coordinated fashion to direct a patient to screening and monitoring services. Such an approach offers the opportunity to transform health care delivery and improve early disease detection, improve access to care, enhance equity especially in rural and underserved communities, and reduce costs. With effective implementation and collaboration among key stakeholders, this approach has the potential to contribute to an equitable and effective health care system.

ChatOCT: Embedded Clinical Decision Support Systems for Optical Coherence Tomography in Offline and Resource-Limited Settings.

Liu C, Zhang H, Zheng Z, Liu W, Gu C, Lan Q, Zhang W, Yang J

pubmed logopapersMay 7 2025
Optical Coherence Tomography (OCT) is a critical imaging modality for diagnosing ocular and systemic conditions, yet its accessibility is hindered by the need for specialized expertise and high computational demands. To address these challenges, we introduce ChatOCT, an offline-capable, domain-adaptive clinical decision support system (CDSS) that integrates structured expert Q&A generation, OCT-specific knowledge injection, and activation-aware model compression. Unlike existing systems, ChatOCT functions without internet access, making it suitable for low-resource environments. ChatOCT is built upon LLaMA-2-7B, incorporating domain-specific knowledge from PubMed and OCT News through a two-stage training process: (1) knowledge injection for OCT-specific expertise and (2) Q&A instruction tuning for structured, interactive diagnostic reasoning. To ensure feasibility in offline environments, we apply activation-aware weight quantization, reducing GPU memory usage to ~ 4.74 GB, enabling deployment on standard OCT hardware. A novel expert answer generation framework mitigates hallucinations by structuring responses in a multi-step process, ensuring accuracy and interpretability. ChatOCT outperforms state-of-the-art baselines such as LLaMA-2, PMC-LLaMA-13B, and ChatDoctor by 10-15 points in coherence, relevance, and clinical utility, while reducing GPU memory requirements by 79%, while maintaining real-time responsiveness (~ 20 ms inference time). Expert ophthalmologists rated ChatOCT's outputs as clinically actionable and aligned with real-world decision-making needs, confirming its potential to assist frontline healthcare providers. ChatOCT represents an innovative offline clinical decision support system for optical coherence tomography (OCT) that runs entirely on local embedded hardware, enabling real-time analysis in resource-limited settings without internet connectivity. By offering a scalable, generalizable pipeline that integrates knowledge injection, instruction tuning, and model compression, ChatOCT provides a blueprint for next-generation, resource-efficient clinical AI solutions across multiple medical domains.

Machine Learning Approach to 3×4 Mueller Polarimetry for Complete Reconstruction of Diagnostic Polarimetric Images of Biological Tissues.

Chae S, Huang T, Rodriguez-Nunez O, Lucas T, Vanel JC, Vizet J, Pierangelo A, Piavchenko G, Genova T, Ajmal A, Ramella-Roman JC, Doronin A, Ma H, Novikova T

pubmed logopapersMay 6 2025
The translation of imaging Mueller polarimetry to clinical practice is often hindered by large footprint and relatively slow acquisition speed of the existing instruments. Using polarization-sensitive camera as a detector may reduce instrument dimensions and allow data streaming at video rate. However, only the first three rows of a complete 4×4 Mueller matrix can be measured. To overcome this hurdle we developed a machine learning approach using sequential neural network algorithm for the reconstruction of missing elements of a Mueller matrix from the measured elements of the first three rows. The algorithm was trained and tested on the dataset of polarimetric images of various excised human tissues (uterine cervix, colon, skin, brain) acquired with two different imaging Mueller polarimeters operating in either reflection (wide-field imaging system) or transmission (microscope) configurations at different wavelengths of 550 nm and 385 nm, respectively. Reconstruction performance was evaluated using various error metrics, all of which confirmed low error values. The reconstruction of full images of the fourth row of Mueller matrix with GPU parallelization and increasing batch size took less than 50 milliseconds. It suggests that a machine learning approach with parallel processing of all image pixels combined with the partial Mueller polarimeter operating at video rate can effectively substitute for the complete Mueller polarimeter and produce accurate maps of depolarization, linear retardance and orientation of the optical axis of biological tissues, which can be used for medical diagnosis in clinical settings.
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