This study explores a multi-modal deep learning approach that integrates pre-intervention neuroimaging and clinical data to predict endovascular therapy (EVT) outcomes in acute ischemic stroke patients. To this end, consecutive stroke patients undergoing EVT were included in the study, including patients with suspected Intracranial Atherosclerosis-related Large Vessel Occlusion ICAD-LVO and other refractory occlusions. A retrospective, single-center cohort of patients with anterior circulation LVO who underwent EVT between 2017-2023 was analyzed. Refractory LVO (rLVO) defined class, comprised patients who presented any of the following: final angiographic stenosis > 50 %, unsuccessful recanalization (eTICI 0-2a) or required rescue treatments (angioplasty +/- stenting). Neuroimaging data included non-contrast CT and CTA volumes, automated vascular segmentation, and CT perfusion parameters. Clinical data included demographics, comorbidities and stroke severity. Imaging features were encoded using convolutional neural networks and fused with clinical data using a DAFT module. Data were split 80 % for training (with four-fold cross-validation) and 20 % for testing. Explainability methods were used to analyze the contribution of clinical variables and regions of interest in the images. The final sample comprised 599 patients; 481 for training the model (77, 16.0 % rLVO), and 118 for testing (16, 13.6 % rLVO). The best model predicting rLVO using just imaging achieved an AUC of 0.53 ± 0.02 and F1 of 0.19 ± 0.05 while the proposed multimodal model achieved an AUC of 0.70 ± 0.02 and F1 of 0.39 ± 0.02 in testing. Combining vascular segmentation, clinical variables, and imaging data improved prediction performance over single-source models. This approach offers an early alert to procedural complexity, potentially guiding more tailored, timely intervention strategies in the EVT workflow.

$\textbf{Objective:}$ Brain-predicted age difference (BrainAGE) is a neuroimaging biomarker reflecting brain health. However, training robust BrainAGE models requires large datasets, often restricted by privacy concerns. This study evaluates the performance of federated learning (FL) for BrainAGE estimation in ischemic stroke patients treated with mechanical thrombectomy, and investigates its association with clinical phenotypes and functional outcomes. $\textbf{Methods:}$ We used FLAIR brain images from 1674 stroke patients across 16 hospital centers. We implemented standard machine learning and deep learning models for BrainAGE estimates under three data management strategies: centralized learning (pooled data), FL (local training at each site), and single-site learning. We reported prediction errors and examined associations between BrainAGE and vascular risk factors (e.g., diabetes mellitus, hypertension, smoking), as well as functional outcomes at three months post-stroke. Logistic regression evaluated BrainAGE's predictive value for these outcomes, adjusting for age, sex, vascular risk factors, stroke severity, time between MRI and arterial puncture, prior intravenous thrombolysis, and recanalisation outcome. $\textbf{Results:}$ While centralized learning yielded the most accurate predictions, FL consistently outperformed single-site models. BrainAGE was significantly higher in patients with diabetes mellitus across all models. Comparisons between patients with good and poor functional outcomes, and multivariate predictions of these outcomes showed the significance of the association between BrainAGE and post-stroke recovery. $\textbf{Conclusion:}$ FL enables accurate age predictions without data centralization. The strong association between BrainAGE, vascular risk factors, and post-stroke recovery highlights its potential for prognostic modeling in stroke care.

Objective: Our study aimed to evaluate and validate PanSegNet, a deep learning (DL) algorithm for pediatric pancreas segmentation on MRI in children with acute pancreatitis (AP), chronic pancreatitis (CP), and healthy controls. Methods: With IRB approval, we retrospectively collected 84 MRI scans (1.5T/3T Siemens Aera/Verio) from children aged 2-19 years at Gazi University (2015-2024). The dataset includes healthy children as well as patients diagnosed with AP or CP based on clinical criteria. Pediatric and general radiologists manually segmented the pancreas, then confirmed by a senior pediatric radiologist. PanSegNet-generated segmentations were assessed using Dice Similarity Coefficient (DSC) and 95th percentile Hausdorff distance (HD95). Cohen's kappa measured observer agreement. Results: Pancreas MRI T2W scans were obtained from 42 children with AP/CP (mean age: 11.73 +/- 3.9 years) and 42 healthy children (mean age: 11.19 +/- 4.88 years). PanSegNet achieved DSC scores of 88% (controls), 81% (AP), and 80% (CP), with HD95 values of 3.98 mm (controls), 9.85 mm (AP), and 15.67 mm (CP). Inter-observer kappa was 0.86 (controls), 0.82 (pancreatitis), and intra-observer agreement reached 0.88 and 0.81. Strong agreement was observed between automated and manual volumes (R^2 = 0.85 in controls, 0.77 in diseased), demonstrating clinical reliability. Conclusion: PanSegNet represents the first validated deep learning solution for pancreatic MRI segmentation, achieving expert-level performance across healthy and diseased states. This tool, algorithm, along with our annotated dataset, are freely available on GitHub and OSF, advancing accessible, radiation-free pediatric pancreatic imaging and fostering collaborative research in this underserved domain.

Diffusion magnetic resonance imaging (dMRI) enables non-invasive investigation of tissue microstructure. The Standard Model (SM) of white matter aims to disentangle dMRI signal contributions from intra- and extra-axonal water compartments. However, due to the model its high-dimensional nature, extensive acquisition protocols with multiple b-values and diffusion tensor shapes are typically required to mitigate parameter degeneracies. Even then, accurate estimation remains challenging due to noise. This work introduces a novel estimation framework based on implicit neural representations (INRs), which incorporate spatial regularization through the sinusoidal encoding of the input coordinates. The INR method is evaluated on both synthetic and in vivo datasets and compared to parameter estimates using cubic polynomials, supervised neural networks, and nonlinear least squares. Results demonstrate superior accuracy of the INR method in estimating SM parameters, particularly in low signal-to-noise conditions. Additionally, spatial upsampling of the INR can represent the underlying dataset anatomically plausibly in a continuous way, which is unattainable with linear or cubic interpolation. The INR is fully unsupervised, eliminating the need for labeled training data. It achieves fast inference ($\sim$6 minutes), is robust to both Gaussian and Rician noise, supports joint estimation of SM kernel parameters and the fiber orientation distribution function with spherical harmonics orders up to at least 8 and non-negativity constraints, and accommodates spatially varying acquisition protocols caused by magnetic gradient non-uniformities. The combination of these properties along with the possibility to easily adapt the framework to other dMRI models, positions INRs as a potentially important tool for analyzing and interpreting diffusion MRI data.

Automated grading of Knee Osteoarthritis (KOA) from radiographs is challenged by significant inter-observer variability and the limited robustness of deep learning models, particularly near critical decision boundaries. To address these limitations, this paper proposes a novel framework, Diffusion-based Counterfactual Augmentation (DCA), which enhances model robustness and interpretability by generating targeted counterfactual examples. The method navigates the latent space of a diffusion model using a Stochastic Differential Equation (SDE), governed by balancing a classifier-informed boundary drive with a manifold constraint. The resulting counterfactuals are then used within a self-corrective learning strategy to improve the classifier by focusing on its specific areas of uncertainty. Extensive experiments on the public Osteoarthritis Initiative (OAI) and Multicenter Osteoarthritis Study (MOST) datasets demonstrate that this approach significantly improves classification accuracy across multiple model architectures. Furthermore, the method provides interpretability by visualizing minimal pathological changes and revealing that the learned latent space topology aligns with clinical knowledge of KOA progression. The DCA framework effectively converts model uncertainty into a robust training signal, offering a promising pathway to developing more accurate and trustworthy automated diagnostic systems. Our code is available at https://github.com/ZWang78/DCA.

Multi contrast MRI synthesis is inherently challenging due to the complex and nonlinear relationships among different contrasts. Each MRI contrast highlights unique tissue properties, but their complementary information is difficult to exploit due to variations in intensity distributions and contrast specific textures. Existing methods for multi contrast MRI synthesis primarily utilize spatial domain features, which capture localized anatomical structures but struggle to model global intensity variations and distributed patterns. Conversely, frequency domain features provide structured inter contrast correlations but lack spatial precision, limiting their ability to retain finer details. To address this, we propose a dual domain learning framework that integrates spatial and frequency domain information across multiple MRI contrasts for enhanced synthesis. Our method employs two mutually trained denoising networks, one conditioned on spatial domain and the other on frequency domain contrast features through a shared critic network. Additionally, an uncertainty driven mask loss directs the models focus toward more critical regions, further improving synthesis accuracy. Extensive experiments show that our method outperforms SOTA baselines, and the downstream segmentation performance highlights the diagnostic value of the synthetic results.

To develop and validate a CT image-based multiple time-series deep learning model for the longitudinal prediction of benign and malignant pulmonary ground-glass nodules (GGNs). A total of 486 GGNs from an equal number of patients were included in this research, which took place at two medical centers. Each nodule underwent surgical removal and was confirmed pathologically. The patients were randomly assigned to a training set, validation set, and test set, following a distribution ratio of 7:2:1. We established a transformer-based deep learning framework that leverages multi-temporal CT images for the longitudinal prediction of GGNs, focusing on distinguishing between benign and malignant types. Additionally, we utilized 13 different machine learning algorithms to formulate clinical models, delta-radiomics models, and combined models that merge deep learning with CT semantic features. The predictive capabilities of the models were assessed using the receiver operating characteristic (ROC) curve and the area under the curve (AUC). The multiple time-series deep learning model based on CT images surpassed both the clinical model and the delta-radiomics model, showcasing strong predictive capabilities for GGNs across the training, validation, and test sets, with AUCs of 0.911 (95% CI, 0.879-0.939), 0.809 (95% CI,0.715-0.908), and 0.817 (95% CI,0.680-0.937), respectively. Furthermore, the models that integrated deep learning with CT semantic features achieved the highest performance, resulting in AUCs of 0.960 (95% CI, 0.912-0.977), 0.878 (95% CI,0.801-0.942), and 0.890(95% CI, 0.790-0.968). The multiple time-series deep learning model utilizing CT images was effective in predicting benign and malignant GGNs.

Popliteal sciatic nerve block is a widely used technique for lower limb anesthesia. However, despite ultrasound guidance, the complex anatomical structures of the popliteal fossa can present challenges, potentially leading to complications. To accurately identify the bifurcation of the sciatic nerve for nerve blockade, we propose MDEANet, a deep learning-based segmentation network designed for the precise localization of nerves, muscles, and arteries in ultrasound images of the popliteal region. MDEANet incorporates Cascaded Multi-scale Atrous Convolutions (CMAC) to enhance multi-scale feature extraction, Enhanced Spatial Attention Mechanism (ESAM) to focus on key anatomical regions, and Cross-level Feature Fusion (CLFF) to improve contextual representation. This integration markedly improves segmentation of nerves, muscles, and arteries. Experimental results demonstrate that MDEANet achieves an average Intersection over Union (IoU) of 88.60% and a Dice coefficient of 93.95% across all target structures, outperforming state-of-the-art models by 1.68% in IoU and 1.66% in Dice coefficient. Specifically, for nerve segmentation, the Dice coefficient reaches 93.31%, underscoring the effectiveness of our approach. MDEANet has the potential to provide decision-support assistance for anesthesiologists, thereby enhancing the accuracy and efficiency of ultrasound-guided nerve blockade procedures.

BackgroundCognitive dysfunction often co-occurs with psychopathology. Advances in neuroimaging and machine learning have led to neural indicators that predict individual differences in cognition with reasonable performance. We examined whether these neural indicators explain the relationship between cognition and mental health in the UK Biobank cohort (n > 14000). MethodsUsing machine learning, we quantified the covariation between general cognition and 133 mental health indices and derived neural indicators of cognition from 72 neuroimaging phenotypes across diffusion-weighted MRI (dwMRI), resting-state functional MRI (rsMRI), and structural MRI (sMRI). With commonality analyses, we investigated how much of the cognition-mental health covariation is captured by each neural indicator and neural indicators combined within and across MRI modalities. ResultsThe predictive association between mental health and cognition was at out-of-sample r = 0.3. Neuroimaging phenotypes captured 2.1% to 25.8% of the cognition-mental health covariation. The highest proportion of variance explained by dwMRI was attributed to the number of streamlines connecting cortical regions (19.3%), by rsMRI through functional connectivity between 55 large-scale networks (25.8%), and by sMRI via the volumetric characteristics of subcortical structures (21.8%). Combining neuroimaging phenotypes within modalities improved the explanation to 25.5% for dwMRI, 29.8% for rsMRI, and 31.6% for sMRI, and combining them across all MRI modalities enhanced the explanation to 48%. ConclusionsWe present an integrated approach to derive multimodal MRI markers of cognition that can be transdiagnostically linked to psychopathology. This demonstrates that the predictive ability of neural indicators extends beyond the prediction of cognition itself, enabling us to capture the cognition-mental health covariation.

This study compares the classification accuracy of novel transformer-based deep learning models (ViT and BEiT) on brain MRIs of gliomas and meningiomas through a feature-driven approach. Meta's Segment Anything Model was used for semi-automatic segmentation, therefore proposing a total neural network-based workflow for this classification task. ViT and BEiT models were finetuned to a publicly available brain MRI dataset. Gliomas/meningiomas cases (625/507) were used for training and 520 cases (260/260; gliomas/meningiomas) for testing. The extracted deep radiomic features from ViT and BEiT underwent normalization, dimensionality reduction based on the Pearson correlation coefficient (PCC), and feature selection using analysis of variance (ANOVA). A multi-layer perceptron (MLP) with 1 hidden layer, 100 units, rectified linear unit activation, and Adam optimizer was utilized. Hyperparameter tuning was performed via 5-fold cross-validation. The ViT model achieved the highest AUC on the validation dataset using 7 features, yielding an AUC of 0.985 and accuracy of 0.952. On the independent testing dataset, the model exhibited an AUC of 0.962 and an accuracy of 0.904. The BEiT model yielded an AUC of 0.939 and an accuracy of 0.871 on the testing dataset. This study demonstrates the effectiveness of transformer-based models, especially ViT, for glioma and meningioma classification, achieving high AUC scores and accuracy. However, the study is limited by the use of a single dataset, which may affect generalizability. Future work should focus on expanding datasets and further optimizing models to improve performance and applicability across different institutions. This study introduces a feature-driven methodology for glioma and meningioma classification, showcasing advancements in the accuracy and model robustness of transformer-based models.