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Localized FNO for Spatiotemporal Hemodynamic Upsampling in Aneurysm MRI

Kyriakos Flouris, Moritz Halter, Yolanne Y. R. Lee, Samuel Castonguay, Luuk Jacobs, Pietro Dirix, Jonathan Nestmann, Sebastian Kozerke, Ender Konukoglu

arxiv logopreprintJul 18 2025
Hemodynamic analysis is essential for predicting aneurysm rupture and guiding treatment. While magnetic resonance flow imaging enables time-resolved volumetric blood velocity measurements, its low spatiotemporal resolution and signal-to-noise ratio limit its diagnostic utility. To address this, we propose the Localized Fourier Neural Operator (LoFNO), a novel 3D architecture that enhances both spatial and temporal resolution with the ability to predict wall shear stress (WSS) directly from clinical imaging data. LoFNO integrates Laplacian eigenvectors as geometric priors for improved structural awareness on irregular, unseen geometries and employs an Enhanced Deep Super-Resolution Network (EDSR) layer for robust upsampling. By combining geometric priors with neural operator frameworks, LoFNO de-noises and spatiotemporally upsamples flow data, achieving superior velocity and WSS predictions compared to interpolation and alternative deep learning methods, enabling more precise cerebrovascular diagnostics.

Enhanced Image Quality and Comparable Diagnostic Performance of Prostate Fast Bi-MRI with Deep Learning Reconstruction.

Shen L, Yuan Y, Liu J, Cheng Y, Liao Q, Shi R, Xiong T, Xu H, Wang L, Yang Z

pubmed logopapersJul 18 2025
To evaluate image quality and diagnostic performance of prostate biparametric MRI (bi-MRI) with deep learning reconstruction (DLR). This prospective study included 61 adult male urological patients undergoing prostate MRI with standard-of-care (SOC) and fast protocols. Sequences included T2-weighted imaging (T2WI), diffusion-weighted imaging (DWI), and apparent diffusion coefficient (ADC) maps. DLR images were generated from FAST datasets. Three groups (SOC, FAST, DLR) were compared using: (1) five-point Likert scale, (2) signal-to-noise ratio (SNR), contrast-to-noise ratio (CNR), (3) lesion slope profiles, (4) dorsal capsule edge rise distance (ERD). PI-RADS scores were assigned to dominant lesions. ADC values were measured in histopathologically confirmed cases. Diagnostic performance was analyzed via receiver operating characteristic (ROC) curves (accuracy/sensitivity/specificity). Statistical tests included Friedman test, one-way ANOVA with post hoc analyses, and DeLong test for ROC comparisons (P<0.05). FAST scanning protocols reduced acquisition time by nearly half compared to the SOC scanning protocol. When compared to T2WI<sub>FAST</sub>, DLR significantly improved SNR, CNR, slope profile, and ERD (P < 0.05). Similarly, DLR significantly enhanced SNR, CNR, and image sharpness when compared to DWI<sub>FAST</sub> (P < 0.05). No significant differences were observed in PI-RADS scores and ADC values between groups (P > 0.05). The areas under the ROC curves, sensitivity, and specificity of ADC values for distinguishing benign and malignant lesions remained consistent (P > 0.05). DLR enhances image quality in fast prostate bi-MRI while preserving PI-RADS classification accuracy and ADC diagnostic performance.

Deep learning reconstruction enhances image quality in contrast-enhanced CT venography for deep vein thrombosis.

Asari Y, Yasaka K, Kurashima J, Katayama A, Kurokawa M, Abe O

pubmed logopapersJul 18 2025
This study aimed to evaluate and compare the diagnostic performance and image quality of deep learning reconstruction (DLR) with hybrid iterative reconstruction (Hybrid IR) and filtered back projection (FBP) in contrast-enhanced CT venography for deep vein thrombosis (DVT). A retrospective analysis was conducted on 51 patients who underwent lower limb CT venography, including 20 with DVT lesions and 31 without DVT lesions. CT images were reconstructed using DLR, Hybrid IR, and FBP. Quantitative image quality metrics, such as contrast-to-noise ratio (CNR) and image noise, were measured. Three radiologists independently assessed DVT lesion detection, depiction of DVT lesions and normal structures, subjective image noise, artifacts, and overall image quality using scoring systems. Diagnostic performance was evaluated using sensitivity and area under the receiver operating characteristic curve (AUC). The paired t-test and Wilcoxon signed-rank test compared the results for continuous variables and ordinal scales, respectively, between DLR and Hybrid IR as well as between DLR and FBP. DLR significantly improved CNR and reduced image noise compared to Hybrid IR and FBP (p < 0.001). AUC and sensitivity for DVT detection were not statistically different across reconstruction methods. Two readers reported improved lesion visualization with DLR. DLR was also rated superior in image quality, normal structure depiction, and noise suppression by all readers (p < 0.001). DLR enhances image quality and anatomical clarity in CT venography. These findings support the utility of DLR in improving diagnostic confidence and image interpretability in DVT assessment.

Deep learning reconstruction for improving image quality of pediatric abdomen MRI using a 3D T1 fast spoiled gradient echo acquisition.

Zucker EJ, Milshteyn E, Machado-Rivas FA, Tsai LL, Roberts NT, Guidon A, Gee MS, Victoria T

pubmed logopapersJul 18 2025
Deep learning (DL) reconstructions have shown utility for improving image quality of abdominal MRI in adult patients, but a paucity of literature exists in children. To compare image quality between three-dimensional fast spoiled gradient echo (SPGR) abdominal MRI acquisitions reconstructed conventionally and using a prototype method based on a commercial DL algorithm in a pediatric cohort. Pediatric patients (age < 18 years) who underwent abdominal MRI from 10/2023-3/2024 including gadolinium-enhanced accelerated 3D SPGR 2-point Dixon acquisitions (LAVA-Flex, GE HealthCare) were identified. Images were retrospectively generated using a prototype reconstruction method leveraging a commercial deep learning algorithm (AIR™ Recon DL, GE HealthCare) with the 75% noise reduction setting. For each case/reconstruction, three radiologists independently scored DL and non-DL image quality (overall and of selected structures) on a 5-point Likert scale (1-nondiagnostic, 5-excellent) and indicated reconstruction preference. The signal-to-noise ratio (SNR) and mean number of edges (inverse correlate of image sharpness) were also quantified. Image quality metrics and preferences were compared using Wilcoxon signed-rank, Fisher exact, and paired t-tests. Interobserver agreement was evaluated with the Kendall rank correlation coefficient (W). The final cohort consisted of 38 patients with mean ± standard deviation age of 8.6 ± 5.7 years, 23 males. Mean image quality scores for evaluated structures ranged from 3.8 ± 1.1 to 4.6 ± 0.6 in the DL group, compared to 3.1 ± 1.1 to 3.9 ± 0.6 in the non-DL group (all P < 0.001). All radiologists preferred DL in most cases (32-37/38, P < 0.001). There were a 2.3-fold increase in SNR and a 3.9% reduction in the mean number of edges in DL compared to non-DL images (both P < 0.001). In all scored anatomic structures except the spine and non-DL adrenals, interobserver agreement was moderate to substantial (W = 0.41-0.74, all P < 0.01). In a broad spectrum of pediatric patients undergoing contrast-enhanced Dixon abdominal MRI acquisitions, the prototype deep learning reconstruction is generally preferred to conventional methods with improved image quality across a wide range of structures.

Image quality and radiation dose of reduced-dose abdominopelvic computed tomography (CT) with silver filter and deep learning reconstruction.

Otgonbaatar C, Jeon SH, Cha SJ, Shim H, Kim JW, Ahn JH

pubmed logopapersJul 16 2025
To assess the image quality and radiation dose between reduced-dose CT with deep learning reconstruction (DLR) using SilverBeam filter and standard dose with iterative reconstruction (IR) in abdominopelvic CT. In total, 182 patients (mean age ± standard deviation, 63 ± 14 years; 100 men) were included. Standard-dose scanning was performed with a tube voltage of 100 kVp, automatic tube current modulation, and IR reconstruction, whereas reduced-dose scanning was performed with a tube voltage of 120 kVp, a SilverBeam filter, and DLR. Additionally, a contrast-enhanced (CE)-boost image was obtained for reduced-dose scanning. Radiation dose, objective, and subjective image analyses were performed in each body mass index (BMI) category. The radiation dose for SilverBeam with DLR was significantly lower than that of standard dose with IR, with an average reduction in the effective dose of 59.0% (1.87 vs. 4.57 mSv). Standard dose with IR (10.59 ± 1.75) and SilverBeam with DLR (10.60 ± 1.08) showed no significant difference in image noise (p = 0.99). In the obese group (BMI > 25 kg/m<sup>2</sup>), there were no significant differences in SNRs of the liver, pancreas, and spleen between standard dose with IR and SilverBeam with DLR. SilverBeam with DLR + CE-boost demonstrated significantly better SNRs and CNRs, compared with standard dose with IR and SilverBeam with DLR. DLR combined with silver filter is effective for routine abdominopelvic CT, achieving a clearly reduced radiation dose while providing image quality that is non-inferior to standard dose with IR.

Real-time, inline quantitative MRI enabled by scanner-integrated machine learning: a proof of principle with NODDI

Samuel Rot, Iulius Dragonu, Christina Triantafyllou, Matthew Grech-Sollars, Anastasia Papadaki, Laura Mancini, Stephen Wastling, Jennifer Steeden, John Thornton, Tarek Yousry, Claudia A. M. Gandini Wheeler-Kingshott, David L. Thomas, Daniel C. Alexander, Hui Zhang

arxiv logopreprintJul 16 2025
Purpose: The clinical feasibility and translation of many advanced quantitative MRI (qMRI) techniques are inhibited by their restriction to 'research mode', due to resource-intensive, offline parameter estimation. This work aimed to achieve 'clinical mode' qMRI, by real-time, inline parameter estimation with a trained neural network (NN) fully integrated into a vendor's image reconstruction environment, therefore facilitating and encouraging clinical adoption of advanced qMRI techniques. Methods: The Siemens Image Calculation Environment (ICE) pipeline was customised to deploy trained NNs for advanced diffusion MRI parameter estimation with Open Neural Network Exchange (ONNX) Runtime. Two fully-connected NNs were trained offline with data synthesised with the neurite orientation dispersion and density imaging (NODDI) model, using either conventionally estimated (NNMLE) or ground truth (NNGT) parameters as training labels. The strategy was demonstrated online with an in vivo acquisition and evaluated offline with synthetic test data. Results: NNs were successfully integrated and deployed natively in ICE, performing inline, whole-brain, in vivo NODDI parameter estimation in <10 seconds. DICOM parametric maps were exported from the scanner for further analysis, generally finding that NNMLE estimates were more consistent than NNGT with conventional estimates. Offline evaluation confirms that NNMLE has comparable accuracy and slightly better noise robustness than conventional fitting, whereas NNGT exhibits compromised accuracy at the benefit of higher noise robustness. Conclusion: Real-time, inline parameter estimation with the proposed generalisable framework resolves a key practical barrier to clinical uptake of advanced qMRI methods and enables their efficient integration into clinical workflows.

Super-resolution deep learning in pediatric CTA for congenital heart disease: enhancing intracardiac visualization under free-breathing conditions.

Zhou X, Xiong D, Liu F, Li J, Tan N, Duan X, Du X, Ouyang Z, Bao S, Ke T, Zhao Y, Tao J, Dong X, Wang Y, Liao C

pubmed logopapersJul 16 2025
This study assesses the effectiveness of super-resolution deep learning reconstruction (SR-DLR), conventional deep learning reconstruction (C-DLR), and hybrid iterative reconstruction (HIR) in enhancing image quality and diagnostic performance for pediatric congenital heart disease (CHD) in CT angiography (CCTA). A total of 91 pediatric patients aged 1-10 years, suspected of having CHD, were consecutively enrolled for CCTA under free-breathing conditions. Reconstructions were performed using SR-DLR, C-DLR, and HIR algorithms. Objective metrics-standard deviation (SD), signal-to-noise ratio (SNR), and contrast-to-noise ratio (CNR)-were quantified. Two radiologists provided blinded subjective image quality evaluations. The full width at half maximum of lesions was significantly larger on SR-DLR (9.50 ± 6.44 mm) than on C-DLR (9.08 ± 6.23 mm; p < 0.001) and HIR (8.98 ± 6.37 mm; p < 0.001). SR-DLR exhibited superior performance with significantly reduced SD and increased SNR and CNR, particularly in the left ventricle, left atrium, and right ventricle regions (p < 0.05). Subjective evaluations favored SR-DLR over C-DLR and HIR (p < 0.05). The accuracy (99.12%), sensitivity (99.07%), and negative predictive value (85.71%) of SR-DLR were the highest, significantly exceeding those of C-DLR (+7.01%, +7.40%, and +45.71%) and HIR (+20.17%, +21.29%, and +65.71%), with statistically significant differences (p < 0.05 and p < 0.001). In the detection of atrial septal defects (ASDs) and ventricular septal defects (VSDs), SR-DLR demonstrated significantly higher sensitivity compared to C-DLR (+8.96% and +9.09%) and HIR (+20.90% and +36.36%). For multi-perforated ASDs and VSDs, SR-DLR's sensitivity reached 85.71% and 100%, far surpassing C-DLR and HIR. SR-DLR significantly reduces image noise and enhances resolution, improving the diagnostic visualization of CHD structures in pediatric patients. It outperforms existing algorithms in detecting small lesions, achieving diagnostic accuracy close to that of ultrasound. Question Pediatric cardiac computed tomography angiography (CCTA) often fails to adequately visualize intracardiac structures, creating diagnostic challenges for CHD, particularly complex multi-perforated atrioventricular defects. Findings SR-DLR markedly improves image quality and diagnostic accuracy, enabling detailed visualization and precise detection of small congenital lesions. Clinical relevance SR-DLR enhances the diagnostic confidence and accuracy of CCTA in pediatric CHD, reducing missed diagnoses and improving the characterization of complex intracardiac anomalies, thus supporting better clinical decision-making.

Clinical Implementation of Sixfold-Accelerated Deep Learning Superresolution Knee MRI in Under 5 Minutes: Arthroscopy-Validated Diagnostic Performance.

Vosshenrich J, Breit HC, Donners R, Obmann MM, Walter SS, Serfaty A, Rodrigues TC, Recht M, Stern SE, Fritz J

pubmed logopapersJul 16 2025
<b>BACKGROUND</b>. Deep learning (DL) superresolution image reconstruction enables higher acceleration factors for combined parallel imaging-simultaneous multislice-accelerated knee MRI but requires performance validation against external reference standards. <b>OBJECTIVE</b>. The purpose of this study was to validate the clinical efficacy of six-fold-accelerated sub-5-minute 3-T knee MRI using combined threefold parallel imaging (PI) and twofold simultaneous multislice (SMS) acceleration and DL superresolution image reconstruction against arthroscopic surgery. <b>METHODS</b>. Consecutive adult patients with painful knee conditions who underwent sixfold PI-SMS-accelerated DL superresolution 3-T knee MRI and arthroscopic surgery between October 2022 and July 2023 were retrospectively included. Seven fellowship-trained musculoskeletal radiologists independently assessed the MRI studies for image-quality parameters; presence of artifacts; structural visibility (Likert scale: 1 [very bad/severe] to 5 [very good/absent]); and the presence of cruciate ligament tears, collateral ligament tears, meniscal tears, cartilage defects, and fractures. Statistical analyses included kappa-based interreader agreements and diagnostic performance testing. <b>RESULTS</b>. The final sample included 124 adult patients (mean age ± SD, 46 ± 17 years; 79 men, 45 women) who underwent knee MRI and arthroscopic surgery within a median of 28 days (range, 4-56 days). Overall image quality was good to very good (median, 4 [IQR, 4-5]) with very good interreader agreement (κ = 0.86). Motion artifacts were absent (median, 5 [IQR, 5-5]), and image noise was minimal (median, 4 [IQR, 4-5]). Visibility of anatomic structures was very good (median, 5 [IQR, 5-5]). Diagnostic performance for diagnosing arthroscopy-validated structural abnormalities was good to excellent (AUC ≥ 0.81) with at least good interreader agreement (κ ≥ 0.72). The sensitivity, specificity, accuracy, and AUC values were 100%, 99%, 99%, and 0.99 for anterior cruciate ligament tears; 100%, 100%, 100%, and 1.00 for posterior cruciate ligament tears; 90%, 95%, 94%, and 0.93 for medial meniscus tears; 76%, 97%, 90%, and 0.86 for lateral meniscus tears; and 85%, 88%, 88%, and 0.81 for articular cartilage defects, respectively. <b>CONCLUSION</b>. Sixfold PI-SMS-accelerated sub-5-minute DL superresolution 3-T knee MRI has excellent diagnostic performance for detecting internal derangement. <b>CLINICAL IMPACT</b>. Sixfold PI-SMS-accelerated PI-SMS DL superresolution 3-T knee MRI provides high efficiency through short scan times and high diagnostic performance.

Restore-RWKV: Efficient and Effective Medical Image Restoration with RWKV.

Yang Z, Li J, Zhang H, Zhao D, Wei B, Xu Y

pubmed logopapersJul 15 2025
Transformers have revolutionized medical image restoration, but the quadratic complexity still poses limitations for their application to high-resolution medical images. The recent advent of the Receptance Weighted Key Value (RWKV) model in the natural language processing field has attracted much attention due to its ability to process long sequences efficiently. To leverage its advanced design, we propose Restore-RWKV, the first RWKV-based model for medical image restoration. Since the original RWKV model is designed for 1D sequences, we make two necessary modifications for modeling spatial relations in 2D medical images. First, we present a recurrent WKV (Re-WKV) attention mechanism that captures global dependencies with linear computational complexity. Re-WKV incorporates bidirectional attention as basic for a global 16 receptive field and recurrent attention to effectively model 2D dependencies from various scan directions. Second, we develop an omnidirectional token shift (Omni-Shift) layer that enhances local dependencies by shifting tokens from all directions and across a wide context range. These adaptations make the proposed Restore-RWKV an efficient and effective model for medical image restoration. Even a lightweight variant of Restore-RWKV, with only 1.16 million parameters, achieves comparable or even superior results compared to existing state-of-the-art (SOTA) methods. Extensive experiments demonstrate that the resulting Restore-RWKV achieves SOTA performance across a range of medical image restoration tasks, including PET image synthesis, CT image denoising, MRI image superresolution, and all-in-one medical image restoration. Code is available at: https://github.com/Yaziwel/Restore-RWKV.

Ultrafast T2-weighted MR imaging of the urinary bladder using deep learning-accelerated HASTE at 3 Tesla.

Yan L, Tan Q, Kohnert D, Nickel MD, Weiland E, Kubicka F, Jahnke P, Geisel D, Wagner M, Walter-Rittel T

pubmed logopapersJul 15 2025
This prospective study aimed to assess the feasibility of a half-Fourier single-shot turbo spin echo sequence (HASTE) with deep learning (DL) reconstruction for ultrafast imaging of the bladder with reduced susceptibility to motion artifacts. 50 patients underwent pelvic T2w imaging at 3 Tesla using the following MR sequences in sagittal orientation without antiperistaltic premedication: T2-TSE (time of acquisition [TA]: 2.03-4.00 min), standard HASTE (TA: 0.65-1.10 min), and DL-HASTE (TA: 0.25-0.47 min), with a slice thickness of 3 mm and a varying number of slices (25-45). Three radiologists evaluated the image quality of the three sequences quantitatively and qualitatively. Overall image quality of DL-HASTE (average score: 5) was superior to HASTE and T2-TSE (p < .001). DL-HASTE provided the clearest bladder wall delineation, especially in the apical part of the bladder (p < .001). SNR (36.3 ± 6.3) and CNR (50.3 ± 19.7) were the highest on DL-HASTE, followed by T2-TSE (33.1 ± 6.3 and 44.3 ± 21.0, respectively; p < .05) and HASTE (21.7 ± 5.4 and 35.8 ± 17.5, respectively; p < .01). A limitation of DL-HASTE and HASTE was the susceptibility to urine flow artifact within the bladder, which was absent or only minimal on T2-TSE. Diagnostic confidence in assessment of the bladder was highest with the combination of DL-HASTE and T2-TSE (p < .05). DL-HASTE allows for ultrafast imaging of the bladder with high image quality and is a promising addition to T2-TSE.
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