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SealPrint: The Anatomically Replicated Seal-and-Support Socket Abutment Technique A Proof-of-Concept with 12 months follow-up.

Lahoud P, Castro A, Walter E, Jacobs W, De Greef A, Jacobs R

pubmed logopapersJul 2 2025
This study aimed at investigating a novel technique for designing and manufacturing a sealing socket abutment (SSA) using artificial intelligence (AI)-driven tooth segmentation and 3D printing technologies. A validated AI-powered module was used to segment the tooth to be replaced on the presurgical Cone Beam Computed Tomography (CBCT) scan. Following virtual surgical planning, the CBCT and intraoral scan (IOS) were imported into Mimics software. The AI-segmented tooth was aligned with the IOS, sliced horizontally at the temporary abutment's neck, and further trimmed 2 mm above the gingival margin to capture the emergence profile. A conical cut, 2 mm wider than the temporary abutment with a 5° taper, was applied for a passive fit. This process produced a custom sealing socket abutment, which was then 3D-printed. After atraumatic tooth extraction and immediate implant placement, the temporary abutment was positioned, followed by the SealPrint atop. A flowable composite was used to fill the gap between the temporary abutment and the SealPrint; the whole structure sealing the extraction socket, providing by design support for the interdental papilla and protecting the implant and (bio)materials used. True to planning, the SealPrint passively fits on the temporary abutment. It provides an optimal seal over the entire surface of the extraction socket, preserving the emergence profile of the extracted tooth, protecting the dental implant and stabilizing the graft material and blood clot. The SealPrint technique provides a reliable and fast solution for protection and preservation of the soft-, hard-tissues and emergence profile following immediate implant placement.

Towards reliable WMH segmentation under domain shift: An application study using maximum entropy regularization to improve uncertainty estimation.

Matzkin F, Larrazabal A, Milone DH, Dolz J, Ferrante E

pubmed logopapersJul 2 2025
Accurate segmentation of white matter hyperintensities (WMH) is crucial for clinical decision-making, particularly in the context of multiple sclerosis. However, domain shifts, such as variations in MRI machine types or acquisition parameters, pose significant challenges to model calibration and uncertainty estimation. This comparative study investigates the impact of domain shift on WMH segmentation, proposing maximum-entropy regularization techniques to enhance model calibration and uncertainty estimation. The purpose is to identify errors appearing after model deployment in clinical scenarios using predictive uncertainty as a proxy measure, since it does not require ground-truth labels to be computed. We conducted experiments using a classic U-Net architecture and evaluated maximum entropy regularization schemes to improve model calibration under domain shift on two publicly available datasets: the WMH Segmentation Challenge and the 3D-MR-MS dataset. Performance is assessed with Dice coefficient, Hausdorff distance, expected calibration error, and entropy-based uncertainty estimates. Entropy-based uncertainty estimates can anticipate segmentation errors, both in-distribution and out-of-distribution, with maximum-entropy regularization further strengthening the correlation between uncertainty and segmentation performance, while also improving model calibration under domain shift. Maximum-entropy regularization improves uncertainty estimation for WMH segmentation under domain shift. By strengthening the relationship between predictive uncertainty and segmentation errors, these methods allow models to better flag unreliable predictions without requiring ground-truth annotations. Additionally, maximum-entropy regularization contributes to better model calibration, supporting more reliable and safer deployment of deep learning models in multi-center and heterogeneous clinical environments.

Urethra contours on MRI: multidisciplinary consensus educational atlas and reference standard for artificial intelligence benchmarking

song, y., Nguyen, L., Dornisch, A., Baxter, M. T., Barrett, T., Dale, A., Dess, R. T., Harisinghani, M., Kamran, S. C., Liss, M. A., Margolis, D. J., Weinberg, E. P., Woolen, S. A., Seibert, T. M.

medrxiv logopreprintJul 2 2025
IntroductionThe urethra is a recommended avoidance structure for prostate cancer treatment. However, even subspecialist physicians often struggle to accurately identify the urethra on available imaging. Automated segmentation tools show promise, but a lack of reliable ground truth or appropriate evaluation standards has hindered validation and clinical adoption. This study aims to establish a reference-standard dataset with expert consensus contours, define clinically meaningful evaluation metrics, and assess the performance and generalizability of a deep-learning-based segmentation model. Materials and MethodsA multidisciplinary panel of four experienced subspecialists in prostate MRI generated consensus contours of the male urethra for 71 patients across six imaging centers. Four of those cases were previously used in an international study (PURE-MRI), wherein 62 physicians attempted to contour the prostate and urethra on the patient images. Separately, we developed a deep-learning AI model for urethra segmentation using another 151 cases from one center and evaluated it against the consensus reference standard and compared to human performance using Dice Score, percent urethra Coverage, and Maximum 2D (axial, in-plane) Hausdorff Distance (HD) from the reference standard. ResultsIn the PURE-MRI dataset, the AI model outperformed most physicians, achieving a median Dice of 0.41 (vs. 0.33 for physicians), Coverage of 81% (vs. 36%), and Max 2D HD of 1.8 mm (vs. 1.6 mm). In the larger dataset, performance remained consistent, with a Dice of 0.40, Coverage of 89%, and Max 2D HD of 2.0 mm, indicating strong generalizability across a broader patient population and more varied imaging conditions. ConclusionWe established a multidisciplinary consensus benchmark for segmentation of the urethra. The deep-learning model performs comparably to specialist physicians and demonstrates consistent results across multiple institutions. It shows promise as a clinical decision-support tool for accurate and reliable urethra segmentation in prostate cancer radiotherapy planning and studies of dose-toxicity associations.

A deep learning-based computed tomography reading system for the diagnosis of lung cancer associated with cystic airspaces.

Hu Z, Zhang X, Yang J, Zhang B, Chen H, Shen W, Li H, Zhou Y, Zhang J, Qiu K, Xie Z, Xu G, Tan J, Pang C

pubmed logopapersJul 2 2025
To propose a deep learning model and explore its performance in the auxiliary diagnosis of lung cancer associated with cystic airspaces (LCCA) in computed tomography (CT) images. This study is a retrospective analysis that incorporated a total of 342 CT series, comprising 272 series from patients diagnosed with LCCA and 70 series from patients with pulmonary bulla. A deep learning model named LungSSFNet, developed based on nnUnet, was utilized for image recognition and segmentation by experienced thoracic surgeons. The dataset was divided into a training set (245 series), a validation set (62 series), and a test set (35 series). The performance of LungSSFNet was compared with other models such as UNet, M2Snet, TANet, MADGNet, and nnUnet to evaluate its effectiveness in recognizing and segmenting LCCA and pulmonary bulla. LungSSFNet achieved an intersection over union of 81.05% and a Dice similarity coefficient of 75.15% for LCCA, and 93.03% and 92.04% for pulmonary bulla, respectively. These outcomes demonstrate that LungSSFNet outperformed many existing models in segmentation tasks. Additionally, it attained an accuracy of 96.77%, a precision of 100%, and a sensitivity of 96.15%. LungSSFNet, a new deep-learning model, substantially improved the diagnosis of early-stage LCCA and is potentially valuable for auxiliary clinical decision-making. Our LungSSFNet code is available at https://github.com/zx0412/LungSSFNet .

PanTS: The Pancreatic Tumor Segmentation Dataset

Wenxuan Li, Xinze Zhou, Qi Chen, Tianyu Lin, Pedro R. A. S. Bassi, Szymon Plotka, Jaroslaw B. Cwikla, Xiaoxi Chen, Chen Ye, Zheren Zhu, Kai Ding, Heng Li, Kang Wang, Yang Yang, Yucheng Tang, Daguang Xu, Alan L. Yuille, Zongwei Zhou

arxiv logopreprintJul 2 2025
PanTS is a large-scale, multi-institutional dataset curated to advance research in pancreatic CT analysis. It contains 36,390 CT scans from 145 medical centers, with expert-validated, voxel-wise annotations of over 993,000 anatomical structures, covering pancreatic tumors, pancreas head, body, and tail, and 24 surrounding anatomical structures such as vascular/skeletal structures and abdominal/thoracic organs. Each scan includes metadata such as patient age, sex, diagnosis, contrast phase, in-plane spacing, slice thickness, etc. AI models trained on PanTS achieve significantly better performance in pancreatic tumor detection, localization, and segmentation compared to those trained on existing public datasets. Our analysis indicates that these gains are directly attributable to the 16x larger-scale tumor annotations and indirectly supported by the 24 additional surrounding anatomical structures. As the largest and most comprehensive resource of its kind, PanTS offers a new benchmark for developing and evaluating AI models in pancreatic CT analysis.

World of Forms: Deformable geometric templates for one-shot surface meshing in coronary CT angiography.

van Herten RLM, Lagogiannis I, Wolterink JM, Bruns S, Meulendijks ER, Dey D, de Groot JR, Henriques JP, Planken RN, Saitta S, Išgum I

pubmed logopapersJul 1 2025
Deep learning-based medical image segmentation and surface mesh generation typically involve a sequential pipeline from image to segmentation to meshes, often requiring large training datasets while making limited use of prior geometric knowledge. This may lead to topological inconsistencies and suboptimal performance in low-data regimes. To address these challenges, we propose a data-efficient deep learning method for direct 3D anatomical object surface meshing using geometric priors. Our approach employs a multi-resolution graph neural network that operates on a prior geometric template which is deformed to fit object boundaries of interest. We show how different templates may be used for the different surface meshing targets, and introduce a novel masked autoencoder pretraining strategy for 3D spherical data. The proposed method outperforms nnUNet in a one-shot setting for segmentation of the pericardium, left ventricle (LV) cavity and the LV myocardium. Similarly, the method outperforms other lumen segmentation operating on multi-planar reformatted images. Results further indicate that mesh quality is on par with or improves upon marching cubes post-processing of voxel mask predictions, while remaining flexible in the choice of mesh triangulation prior, thus paving the way for more accurate and topologically consistent 3D medical object surface meshing.

Photon-counting detector CT of the brain reduces variability of Hounsfield units and has a mean offset compared with energy-integrating detector CT.

Stein T, Lang F, Rau S, Reisert M, Russe MF, Schürmann T, Fink A, Kellner E, Weiss J, Bamberg F, Urbach H, Rau A

pubmed logopapersJul 1 2025
Distinguishing gray matter (GM) from white matter (WM) is essential for CT of the brain. The recently established photon-counting detector CT (PCD-CT) technology employs a novel detection technique that might allow more precise measurement of tissue attenuation for an improved delineation of attenuation values (Hounsfield units - HU) and improved image quality in comparison with energy-integrating detector CT (EID-CT). To investigate this, we compared HU, GM vs. WM contrast, and image noise using automated deep learning-based brain segmentations. We retrospectively included patients who received either PCD-CT or EID-CT and did not display a cerebral pathology. A deep learning-based segmentation of the GM and WM was used to extract HU. From this, the gray-to-white ratio and contrast-to-noise ratio were calculated. We included 329 patients with EID-CT (mean age 59.8 ± 20.2 years) and 180 with PCD-CT (mean age 64.7 ± 16.5 years). GM and WM showed significantly lower HU in PCD-CT (GM: 40.4 ± 2.2 HU; WM: 33.4 ± 1.5 HU) compared to EID-CT (GM: 45.1 ± 1.6 HU; WM: 37.4 ± 1.6 HU, p < .001). Standard deviations of HU were also lower in PCD-CT (GM and WM both p < .001) and contrast-tonoise ratio was significantly higher in PCD-CT compared to EID-CT (p < .001). Gray-to-white matter ratios were not significantly different across both modalities (p > .99). In an age-matched subset (n = 157 patients from both cohorts), all findings were replicated. This comprehensive comparison of HU in cerebral gray and white matter revealed substantially reduced image noise and an average offset with lower HU in PCD-CT while the ratio between GM and WM remained constant. The potential need to adapt windowing presets based on this finding should be investigated in future studies. CNR = Contrast-to-Noise Ratio; CTDIvol = Volume Computed Tomography Dose Index; EID = Energy-Integrating Detector; GWR = Gray-to-White Matter Ratio; HU = Hounsfield Units; PCD = Photon-Counting Detector; ROI = Region of Interest; VMI = Virtual Monoenergetic Images.

MedScale-Former: Self-guided multiscale transformer for medical image segmentation.

Karimijafarbigloo S, Azad R, Kazerouni A, Merhof D

pubmed logopapersJul 1 2025
Accurate medical image segmentation is crucial for enabling automated clinical decision procedures. However, existing supervised deep learning methods for medical image segmentation face significant challenges due to their reliance on extensive labeled training data. To address this limitation, our novel approach introduces a dual-branch transformer network operating on two scales, strategically encoding global contextual dependencies while preserving local information. To promote self-supervised learning, our method leverages semantic dependencies between different scales, generating a supervisory signal for inter-scale consistency. Additionally, it incorporates a spatial stability loss within each scale, fostering self-supervised content clustering. While intra-scale and inter-scale consistency losses enhance feature uniformity within clusters, we introduce a cross-entropy loss function atop the clustering score map to effectively model cluster distributions and refine decision boundaries. Furthermore, to account for pixel-level similarities between organ or lesion subpixels, we propose a selective kernel regional attention module as a plug and play component. This module adeptly captures and outlines organ or lesion regions, slightly enhancing the definition of object boundaries. Our experimental results on skin lesion, lung organ, and multiple myeloma plasma cell segmentation tasks demonstrate the superior performance of our method compared to state-of-the-art approaches.

HALSR-Net: Improving CNN Segmentation of Cardiac Left Ventricle MRI with Hybrid Attention and Latent Space Reconstruction.

Fakhfakh M, Sarry L, Clarysse P

pubmed logopapersJul 1 2025
Accurate cardiac MRI segmentation is vital for detailed cardiac analysis, yet the manual process is labor-intensive and prone to variability. Despite advancements in MRI technology, there remains a significant need for automated methods that can reliably and efficiently segment cardiac structures. This paper introduces HALSR-Net, a novel multi-level segmentation architecture designed to improve the accuracy and reproducibility of cardiac segmentation from Cine-MRI acquisitions, focusing on the left ventricle (LV). The methodology consists of two main phases: first, the extraction of the region of interest (ROI) using a regression model that accurately predicts the location of a bounding box around the LV; second, the semantic segmentation step based on HALSR-Net architecture. This architecture incorporates a Hybrid Attention Pooling Module (HAPM) that merges attention and pooling mechanisms to enhance feature extraction and capture contextual information. Additionally, a reconstruction module leverages latent space features to further improve segmentation accuracy. Experiments conducted on an in-house clinical dataset and two public datasets (ACDC and LVQuan19) demonstrate that HALSR-Net outperforms state-of-the-art architectures, achieving up to 98% accuracy and F1-score for the segmentation of the LV cavity and myocardium. The proposed approach effectively addresses the limitations of existing methods, offering a more accurate and robust solution for cardiac MRI segmentation, thereby likely to improve cardiac function analysis and patient care.
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