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Deep learning-based lung cancer classification of CT images.

Faizi MK, Qiang Y, Wei Y, Qiao Y, Zhao J, Aftab R, Urrehman Z

pubmed logopapersJul 1 2025
Lung cancer remains a leading cause of cancer-related deaths worldwide, with accurate classification of lung nodules being critical for early diagnosis. Traditional radiological methods often struggle with high false-positive rates, underscoring the need for advanced diagnostic tools. In this work, we introduce DCSwinB, a novel deep learning-based lung nodule classifier designed to improve the accuracy and efficiency of benign and malignant nodule classification in CT images. Built on the Swin-Tiny Vision Transformer (ViT), DCSwinB incorporates several key innovations: a dual-branch architecture that combines CNNs for local feature extraction and Swin Transformer for global feature extraction, and a Conv-MLP module that enhances connections between adjacent windows to capture long-range dependencies in 3D images. Pretrained on the LUNA16 and LUNA16-K datasets, which consist of annotated CT scans from thousands of patients, DCSwinB was evaluated using ten-fold cross-validation. The model demonstrated superior performance, achieving 90.96% accuracy, 90.56% recall, 89.65% specificity, and an AUC of 0.94, outperforming existing models such as ResNet50 and Swin-T. These results highlight the effectiveness of DCSwinB in enhancing feature representation while optimizing computational efficiency. By improving the accuracy and reliability of lung nodule classification, DCSwinB has the potential to assist radiologists in reducing diagnostic errors, enabling earlier intervention and improved patient outcomes.

Deep learning radiomics and mediastinal adipose tissue-based nomogram for preoperative prediction of postoperative‌ brain metastasis risk in non-small cell lung cancer.

Niu Y, Jia HB, Li XM, Huang WJ, Liu PP, Liu L, Liu ZY, Wang QJ, Li YZ, Miao SD, Wang RT, Duan ZX

pubmed logopapersJul 1 2025
Brain metastasis (BM) significantly affects the prognosis of non-small cell lung cancer (NSCLC) patients. Increasing evidence suggests that adipose tissue influences cancer progression and metastasis. This study aimed to develop a predictive nomogram integrating mediastinal fat area (MFA) and deep learning (DL)-derived tumor characteristics to stratify postoperative‌ BM risk in NSCLC patients. A retrospective cohort of 585 surgically resected NSCLC patients was analyzed. Preoperative computed tomography (CT) scans were utilized to quantify MFA using ImageJ software (radiologist-validated measurements). Concurrently, a DL algorithm extracted tumor radiomic features, generating a deep learning brain metastasis score (DLBMS). Multivariate logistic regression identified independent BM predictors, which were incorporated into a nomogram. Model performance was assessed via area under the receiver operating characteristic curve (AUC), calibration plots, integrated discrimination improvement (IDI), net reclassification improvement (NRI), and decision curve analysis (DCA). Multivariate analysis identified N stage, EGFR mutation status, MFA, and DLBMS as independent predictors of BM. The nomogram achieved superior discriminative capacity (AUC: 0.947 in the test set), significantly outperforming conventional models. MFA contributed substantially to predictive accuracy, with IDI and NRI values confirming its incremental utility (IDI: 0.123, <i>P</i> < 0.001; NRI: 0.386, <i>P</i> = 0.023). Calibration analysis demonstrated strong concordance between predicted and observed BM probabilities, while DCA confirmed clinical net benefit across risk thresholds. This DL-enhanced nomogram, incorporating MFA and tumor radiomics, represents a robust and clinically useful tool for preoperative prediction of postoperative BM risk in NSCLC. The integration of adipose tissue metrics with advanced imaging analytics advances personalized prognostic assessment in NSCLC patients. The online version contains supplementary material available at 10.1186/s12885-025-14466-5.

Dual-threshold sample selection with latent tendency difference for label-noise-robust pneumoconiosis staging.

Zhang S, Ren X, Qiang Y, Zhao J, Qiao Y, Yue H

pubmed logopapersJul 1 2025
BackgroundThe precise pneumoconiosis staging suffers from progressive pair label noise (PPLN) in chest X-ray datasets, because adjacent stages are confused due to unidentifialble and diffuse opacities in the lung fields. As deep neural networks are employed to aid the disease staging, the performance is degraded under such label noise.ObjectiveThis study improves the effectiveness of pneumoconiosis staging by mitigating the impact of PPLN through network architecture refinement and sample selection mechanism adjustment.MethodsWe propose a novel multi-branch architecture that incorporates the dual-threshold sample selection. Several auxiliary branches are integrated in a two-phase module to learn and predict the <i>progressive feature tendency</i>. A novel difference-based metric is introduced to iteratively obtained the instance-specific thresholds as a complementary criterion of dynamic sample selection. All the samples are finally partitioned into <i>clean</i> and <i>hard</i> sets according to dual-threshold criteria and treated differently by loss functions with penalty terms.ResultsCompared with the state-of-the-art, the proposed method obtains the best metrics (accuracy: 90.92%, precision: 84.25%, sensitivity: 81.11%, F1-score: 82.06%, and AUC: 94.64%) under real-world PPLN, and is less sensitive to the rise of synthetic PPLN rate. An ablation study validates the respective contributions of critical modules and demonstrates how variations of essential hyperparameters affect model performance.ConclusionsThe proposed method achieves substantial effectiveness and robustness against PPLN in pneumoconiosis dataset, and can further assist physicians in diagnosing the disease with a higher accuracy and confidence.

Lung cancer screening with low-dose CT: definition of positive, indeterminate, and negative screen results. A nodule management recommendation from the European Society of Thoracic Imaging.

Snoeckx A, Silva M, Prosch H, Biederer J, Frauenfelder T, Gleeson F, Jacobs C, Kauczor HU, Parkar AP, Schaefer-Prokop C, Prokop M, Revel MP

pubmed logopapersJul 1 2025
Early detection of lung cancer through low-dose CT lung cancer screening in a high-risk population has proven to reduce lung cancer-specific mortality. Nodule management plays a pivotal role in early detection and further diagnostic approaches. The European Society of Thoracic Imaging (ESTI) has established a nodule management recommendation to improve the handling of pulmonary nodules detected during screening. For solid nodules, the primary method for assessing the likelihood of malignancy is to monitor nodule growth using volumetry software. For subsolid nodules, the aggressiveness is determined by measuring the solid part. The ESTI-recommendation enhances existing protocols but puts a stronger focus on lesion aggressiveness. The main goals are to minimise the overall number of follow-up examinations while preventing the risk of a major stage shift and reducing the risk of overtreatment. KEY POINTS: Question Assessment of nodule growth and management according to guidelines is essential in lung cancer screening. Findings Assessment of nodule aggressiveness defines follow-up in lung cancer screening. Clinical relevance The ESTI nodule management recommendation aims to reduce follow-up examinations while preventing major stage shift and overtreatment.

Gradual poisoning of a chest x-ray convolutional neural network with an adversarial attack and AI explainability methods.

Lee SB

pubmed logopapersJul 1 2025
Given artificial intelligence's transformative effects, studying safety is important to ensure it is implemented in a beneficial way. Convolutional neural networks are used in radiology research for prediction but can be corrupted through adversarial attacks. This study investigates the effect of an adversarial attack, through poisoned data. To improve generalizability, we create a generic ResNet pneumonia classification model and then use it as an example by subjecting it to BadNets adversarial attacks. The study uses various poisoned datasets of different compositions (2%, 16.7% and 100% ratios of poisoned data) and two different test sets (a normal set of test data and one that contained poisoned images) to study the effects of BadNets. To provide a visual effect of the progressing corruption of the models, SHapley Additive exPlanations (SHAP) were used. As corruption progressed, interval analysis revealed that performance on a valid test set decreased while the model learned to predict better on a poisoned test set. SHAP visualization showed focus on the trigger. In the 16.7% poisoned model, SHAP focus did not fixate on the trigger in the normal test set. Minimal effects were seen in the 2% model. SHAP visualization showed decreasing performance was correlated with increasing focus on the trigger. Corruption could potentially be masked in the 16.7% model unless subjected specifically to poisoned data. A minimum threshold for corruption may exist. The study demonstrates insights that can be further studied in future work and with future models. It also identifies areas of potential intervention for safeguarding models against adversarial attacks.

Enhanced pulmonary nodule detection with U-Net, YOLOv8, and swin transformer.

Wang X, Wu H, Wang L, Chen J, Li Y, He X, Chen T, Wang M, Guo L

pubmed logopapersJul 1 2025
Lung cancer remains the leading cause of cancer-related mortality worldwide, emphasizing the critical need for early pulmonary nodule detection to improve patient outcomes. Current methods encounter challenges in detecting small nodules and exhibit high false positive rates, placing an additional diagnostic burden on radiologists. This study aimed to develop a two-stage deep learning model integrating U-Net, Yolov8s, and the Swin transformer to enhance pulmonary nodule detection in computer tomography (CT) images, particularly for small nodules, with the goal of improving detection accuracy and reducing false positives. We utilized the LUNA16 dataset (888 CT scans) and an additional 308 CT scans from Tianjin Chest Hospital. Images were preprocessed for consistency. The proposed model first employs U-Net for precise lung segmentation, followed by Yolov8s augmented with the Swin transformer for nodule detection. The Shape-aware IoU (SIoU) loss function was implemented to improve bounding box predictions. For the LUNA16 dataset, the model achieved a precision of 0.898, a recall of 0.851, and a mean average precision at 50% IoU (mAP50) of 0.879, outperforming state-of-the-art models. The Tianjin Chest Hospital dataset has a precision of 0.855, a recall of 0.872, and an mAP50 of 0.862. This study presents a two-stage deep learning model that leverages U-Net, Yolov8s, and the Swin transformer for enhanced pulmonary nodule detection in CT images. The model demonstrates high accuracy and a reduced false positive rate, suggesting its potential as a useful tool for early lung cancer diagnosis and treatment.

2.5D deep learning radiomics and clinical data for predicting occult lymph node metastasis in lung adenocarcinoma.

Huang X, Huang X, Wang K, Bai H, Lu X, Jin G

pubmed logopapersJul 1 2025
Occult lymph node metastasis (OLNM) refers to lymph node involvement that remains undetectable by conventional imaging techniques, posing a significant challenge in the accurate staging of lung adenocarcinoma. This study aims to investigate the potential of combining 2.5D deep learning radiomics with clinical data to predict OLNM in lung adenocarcinoma. Retrospective contrast-enhanced CT images were collected from 1,099 patients diagnosed with lung adenocarcinoma across two centers. Multivariable analysis was performed to identify independent clinical risk factors for constructing clinical signatures. Radiomics features were extracted from the enhanced CT images to develop radiomics signatures. A 2.5D deep learning approach was used to extract deep learning features from the images, which were then aggregated using multi-instance learning (MIL) to construct MIL signatures. Deep learning radiomics (DLRad) signatures were developed by integrating the deep learning features with radiomic features. These were subsequently combined with clinical features to form the combined signatures. The performance of the resulting signatures was evaluated using the area under the curve (AUC). The clinical model achieved AUCs of 0.903, 0.866, and 0.785 in the training, validation, and external test cohorts The radiomics model yielded AUCs of 0.865, 0.892, and 0.796 in the training, validation, and external test cohorts. The MIL model demonstrated AUCs of 0.903, 0.900, and 0.852 in the training, validation, and external test cohorts, respectively. The DLRad model showed AUCs of 0.910, 0.908, and 0.875 in the training, validation, and external test cohorts. Notably, the combined model consistently outperformed all other models, achieving AUCs of 0.940, 0.923, and 0.898 in the training, validation, and external test cohorts. The integration of 2.5D deep learning radiomics with clinical data demonstrates strong capability for OLNM in lung adenocarcinoma, potentially aiding clinicians in developing more personalized treatment strategies.

Preoperative Prediction of STAS Risk in Primary Lung Adenocarcinoma Using Machine Learning: An Interpretable Model with SHAP Analysis.

Wang P, Cui J, Du H, Qian Z, Zhan H, Zhang H, Ye W, Meng W, Bai R

pubmed logopapersJul 1 2025
Accurate preoperative prediction of spread through air spaces (STAS) in primary lung adenocarcinoma (LUAD) is critical for optimizing surgical strategies and improving patient outcomes. To develop a machine learning (ML) based model to predict STAS using preoperative CT imaging features and clinicopathological data, while enhancing interpretability through shapley additive explanations (SHAP) analysis. This multicenter retrospective study included 1237 patients with pathologically confirmed primary LUAD from three hospitals. Patients from Center 1 (n=932) were divided into a training set (n=652) and an internal test set (n=280). Patients from Centers 2 (n=165) and 3 (n=140) formed external validation sets. CT imaging features and clinical variables were selected using Boruta and least absolute shrinkage and selection operator regression. Seven ML models were developed and evaluated using five-fold cross-validation. Performance was assessed using F1 score, recall, precision, specificity, sensitivity, and area under the receiver operating characteristic curve (AUC). The Extreme Gradient Boosting (XGB) model achieved AUCs of 0.973 (training set), 0.862 (internal test set), and 0.842/0.810 (external validation sets). SHAP analysis identified nodule type, carcinoembryonic antigen, maximum nodule diameter, and lobulated sign as key features for predicting STAS. Logistic regression analysis confirmed these as independent risk factors. The XGB model demonstrated high predictive accuracy and interpretability for STAS. By integrating widely available clinical and imaging features, this model offers a practical and effective tool for preoperative risk stratification, supporting personalized surgical planning in primary LUAD management.

Machine-Learning-Based Computed Tomography Radiomics Regression Model for Predicting Pulmonary Function.

Wang W, Sun Y, Wu R, Jin L, Shi Z, Tuersun B, Yang S, Li M

pubmed logopapersJul 1 2025
Chest computed tomography (CT) radiomics can be utilized for categorical predictions; however, models predicting pulmonary function indices directly are lacking. This study aimed to develop machine-learning-based regression models to predict pulmonary function using chest CT radiomics. This retrospective study enrolled patients who underwent chest CT and pulmonary function tests between January 2018 and April 2024. Machine-learning regression models were constructed and validated to predict pulmonary function indices, including forced vital capacity (FVC) and forced expiratory volume in 1 s (FEV<sub>1</sub>). The models incorporated radiomics of the whole lung and clinical features. Model performance was evaluated using mean absolute error, mean squared error, root mean squared error, concordance correlation coefficient (CCC), and R-squared (R<sup>2</sup>) value and compared to spirometry results. Individual explanations of the models' decisions were analyzed using an explainable approach based on SHapley Additive exPlanations. In total, 1585 cases were included in the analysis, with 102 of them being external cases. Across the training, validation, test, and external test sets, the combined model consistently achieved the best performance in the regression task for predicting FVC (e.g. external test set: CCC, 0.745 [95% confidence interval 0.642-0.818]; R<sup>2</sup>, 0.601 [0.453-0.707]) and FEV<sub>1</sub> (e.g. external test set: CCC, 0.744 [0.633-0.824]; R<sup>2</sup>, 0.527 [0.298-0.675]). Age, sex, and emphysema were important factors for both FVC and FEV<sub>1</sub>, while distinct radiomics features contributed to each. Whole-lung-based radiomics features can be used to construct regression models to improve pulmonary function prediction.

Deep Learning-enhanced Opportunistic Osteoporosis Screening in Ultralow-Voltage (80 kV) Chest CT: A Preliminary Study.

Li Y, Liu S, Zhang Y, Zhang M, Jiang C, Ni M, Jin D, Qian Z, Wang J, Pan X, Yuan H

pubmed logopapersJul 1 2025
To explore the feasibility of deep learning (DL)-enhanced, fully automated bone mineral density (BMD) measurement using the ultralow-voltage 80 kV chest CT scans performed for lung cancer screening. This study involved 987 patients who underwent 80 kV chest and 120 kV lumbar CT from January to July 2024. Patients were collected from six CT scanners and divided into the training, validation, and test sets 1 and 2 (561: 177: 112: 137). Four convolutional neural networks (CNNs) were employed for automated segmentation (3D VB-Net and SCN), region of interest extraction (3D VB-Net), and BMD calculation (DenseNet and ResNet) of the target vertebrae (T12-L2). The BMD values of T12-L2 were obtained using 80 and 120 kV quantitative CT (QCT), the latter serving as the standard reference. Linear regression and Bland-Altman analyses were used to compare BMD values between 120 kV QCT and 80 kV CNNs, and between 120 kV QCT and 80 kV QCT. Receiver operating characteristic curve analysis was used to assess the diagnostic performance of the 80 kV CNNs and 80 kV QCT for osteoporosis and low BMD from normal BMD. Linear regression and Bland-ltman analyses revealed a stronger correlation (R<sup>2</sup>=0.991-0.998 and 0.990-0.991, P<0.001) and better agreement (mean error, -1.36 to 1.62 and 1.72 to 2.27 mg/cm<sup>3</sup>; 95% limits of agreement, -9.73 to 7.01 and -5.71 to 10.19mg/cm<sup>3</sup>) for BMD between 120 kV QCT and 80 kV CNNs than between 120 kV QCT and 80 kV QCT. The areas under the curve of the 80 kV CNNs and 80 kV QCT in detecting osteoporosis and low BMD were 0.997-1.000 and 0.997-0.998, and 0.998-1.000 and 0.997, respectively. The DL method could achieve fully automated BMD calculation for opportunistic osteoporosis screening with high accuracy using ultralow-voltage 80 kV chest CT performed for lung cancer screening.
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