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Pretraining Deformable Image Registration Networks with Random Images

Junyu Chen, Shuwen Wei, Yihao Liu, Aaron Carass, Yong Du

arxiv logopreprintMay 30 2025
Recent advances in deep learning-based medical image registration have shown that training deep neural networks~(DNNs) does not necessarily require medical images. Previous work showed that DNNs trained on randomly generated images with carefully designed noise and contrast properties can still generalize well to unseen medical data. Building on this insight, we propose using registration between random images as a proxy task for pretraining a foundation model for image registration. Empirical results show that our pretraining strategy improves registration accuracy, reduces the amount of domain-specific data needed to achieve competitive performance, and accelerates convergence during downstream training, thereby enhancing computational efficiency.

ACM-UNet: Adaptive Integration of CNNs and Mamba for Efficient Medical Image Segmentation

Jing Huang, Yongkang Zhao, Yuhan Li, Zhitao Dai, Cheng Chen, Qiying Lai

arxiv logopreprintMay 30 2025
The U-shaped encoder-decoder architecture with skip connections has become a prevailing paradigm in medical image segmentation due to its simplicity and effectiveness. While many recent works aim to improve this framework by designing more powerful encoders and decoders, employing advanced convolutional neural networks (CNNs) for local feature extraction, Transformers or state space models (SSMs) such as Mamba for global context modeling, or hybrid combinations of both, these methods often struggle to fully utilize pretrained vision backbones (e.g., ResNet, ViT, VMamba) due to structural mismatches. To bridge this gap, we introduce ACM-UNet, a general-purpose segmentation framework that retains a simple UNet-like design while effectively incorporating pretrained CNNs and Mamba models through a lightweight adapter mechanism. This adapter resolves architectural incompatibilities and enables the model to harness the complementary strengths of CNNs and SSMs-namely, fine-grained local detail extraction and long-range dependency modeling. Additionally, we propose a hierarchical multi-scale wavelet transform module in the decoder to enhance feature fusion and reconstruction fidelity. Extensive experiments on the Synapse and ACDC benchmarks demonstrate that ACM-UNet achieves state-of-the-art performance while remaining computationally efficient. Notably, it reaches 85.12% Dice Score and 13.89mm HD95 on the Synapse dataset with 17.93G FLOPs, showcasing its effectiveness and scalability. Code is available at: https://github.com/zyklcode/ACM-UNet.

CCTA-Derived coronary plaque burden offers enhanced prognostic value over CAC scoring in suspected CAD patients.

Dahdal J, Jukema RA, Maaniitty T, Nurmohamed NS, Raijmakers PG, Hoek R, Driessen RS, Twisk JWR, Bär S, Planken RN, van Royen N, Nijveldt R, Bax JJ, Saraste A, van Rosendael AR, Knaapen P, Knuuti J, Danad I

pubmed logopapersMay 30 2025
To assess the prognostic utility of coronary artery calcium (CAC) scoring and coronary computed tomography angiography (CCTA)-derived quantitative plaque metrics for predicting adverse cardiovascular outcomes. The study enrolled 2404 patients with suspected coronary artery disease (CAD) but without a prior history of CAD. All participants underwent CAC scoring and CCTA, with plaque metrics quantified using an artificial intelligence (AI)-based tool (Cleerly, Inc). Percent atheroma volume (PAV) and non-calcified plaque volume percentage (NCPV%), reflecting total plaque burden and the proportion of non-calcified plaque volume normalized to vessel volume, were evaluated. The primary endpoint was a composite of all-cause mortality and non-fatal myocardial infarction (MI). Cox proportional hazard models, adjusted for clinical risk factors and early revascularization, were employed for analysis. During a median follow-up of 7.0 years, 208 patients (8.7%) experienced the primary endpoint, including 73 cases of MI (3%). The model incorporating PAV demonstrated superior discriminatory power for the composite endpoint (AUC = 0.729) compared to CAC scoring (AUC = 0.706, P = 0.016). In MI prediction, PAV (AUC = 0.791) significantly outperformed CAC (AUC = 0.699, P < 0.001), with NCPV% showing the highest prognostic accuracy (AUC = 0.814, P < 0.001). AI-driven assessment of coronary plaque burden enhances prognostic accuracy for future adverse cardiovascular events, highlighting the critical role of comprehensive plaque characterization in refining risk stratification strategies.

Comparative analysis of natural language processing methodologies for classifying computed tomography enterography reports in Crohn's disease patients.

Dai J, Kim MY, Sutton RT, Mitchell JR, Goebel R, Baumgart DC

pubmed logopapersMay 30 2025
Imaging is crucial to assess disease extent, activity, and outcomes in inflammatory bowel disease (IBD). Artificial intelligence (AI) image interpretation requires automated exploitation of studies at scale as an initial step. Here we evaluate natural language processing to classify Crohn's disease (CD) on CTE. From our population representative IBD registry a sample of CD patients (male: 44.6%, median age: 50 IQR37-60) and controls (n = 981 each) CTE reports were extracted and split into training- (n = 1568), development- (n = 196), and testing (n = 198) datasets each with around 200 words and balanced numbers of labels, respectively. Predictive classification was evaluated with CNN, Bi-LSTM, BERT-110M, LLaMA-3.3-70B-Instruct and DeepSeek-R1-Distill-LLaMA-70B. While our custom IBDBERT finetuned on expert IBD knowledge (i.e. ACG, AGA, ECCO guidelines), outperformed rule- and rationale extraction-based classifiers (accuracy 88.6% with pre-tuning learning rate 0.00001, AUC 0.945) in predictive performance, LLaMA, but not DeepSeek achieved overall superior results (accuracy 91.2% vs. 88.9%, F1 0.907 vs. 0.874).

The value of artificial intelligence in PSMA PET: a pathway to improved efficiency and results.

Dadgar H, Hong X, Karimzadeh R, Ibragimov B, Majidpour J, Arabi H, Al-Ibraheem A, Khalaf AN, Anwar FM, Marafi F, Haidar M, Jafari E, Zarei A, Assadi M

pubmed logopapersMay 30 2025
This systematic review investigates the potential of artificial intelligence (AI) in improving the accuracy and efficiency of prostate-specific membrane antigen positron emission tomography (PSMA PET) scans for detecting metastatic prostate cancer. A comprehensive literature search was conducted across Medline, Embase, and Web of Science, adhering to PRISMA guidelines. Key search terms included "artificial intelligence," "machine learning," "deep learning," "prostate cancer," and "PSMA PET." The PICO framework guided the selection of studies focusing on AI's application in evaluating PSMA PET scans for staging lymph node and distant metastasis in prostate cancer patients. Inclusion criteria prioritized original English-language articles published up to October 2024, excluding studies using non-PSMA radiotracers, those analyzing only the CT component of PSMA PET-CT, studies focusing solely on intra-prostatic lesions, and non-original research articles. The review included 22 studies, with a mix of prospective and retrospective designs. AI algorithms employed included machine learning (ML), deep learning (DL), and convolutional neural networks (CNNs). The studies explored various applications of AI, including improving diagnostic accuracy, sensitivity, differentiation from benign lesions, standardization of reporting, and predicting treatment response. Results showed high sensitivity (62% to 97%) and accuracy (AUC up to 98%) in detecting metastatic disease, but also significant variability in positive predictive value (39.2% to 66.8%). AI demonstrates significant promise in enhancing PSMA PET scan analysis for metastatic prostate cancer, offering improved efficiency and potentially better diagnostic accuracy. However, the variability in performance and the "black box" nature of some algorithms highlight the need for larger prospective studies, improved model interpretability, and the continued involvement of experienced nuclear medicine physicians in interpreting AI-assisted results. AI should be considered a valuable adjunct, not a replacement, for expert clinical judgment.

Machine learning-based hemodynamics quantitative assessment of pulmonary circulation using computed tomographic pulmonary angiography.

Xie H, Zhao X, Zhang N, Liu J, Yang G, Cao Y, Xu J, Xu L, Sun Z, Wen Z, Chai S, Liu D

pubmed logopapersMay 30 2025
Pulmonary hypertension (pH) is a malignant pulmonary circulation disease. Right heart catheterization (RHC) is the gold standard procedure for quantitative evaluation of pulmonary hemodynamics. Accurate and noninvasive quantitative evaluation of pulmonary hemodynamics is challenging due to the limitations of currently available assessment methods. Patients who underwent computed tomographic pulmonary angiography (CTPA) and RHC examinations within 2 weeks were included. The dataset was randomly divided into a training set and a test set at an 8:2 ratio. A radiomic feature model and another two-dimensional (2D) feature model aimed to quantitatively evaluate of pulmonary hemodynamics were constructed. The performance of models was determined by calculating the mean squared error, the intraclass correlation coefficient (ICC) and the area under the precision-recall curve (AUC-PR) and performing Bland-Altman analyses. 345 patients: 271 patients with PH (mean age 50 ± 17 years, 93 men) and 74 without PH (mean age 55 ± 16 years, 26 men) were identified. The predictive results of pulmonary hemodynamics of radiomic feature model integrating 5 2D features and other 30 radiomic features were consistent with the results from RHC, and outperformed another 2D feature model. The radiomic feature model exhibited moderate to good reproducibility to predict pulmonary hemodynamic parameters (ICC reached 0.87). In addition, pH can be accurately identified based on a classification model (AUC-PR =0.99). This study provides a noninvasive method for comprehensively and quantitatively evaluating pulmonary hemodynamics using CTPA images, which has the potential to serve as an alternative to RHC, pending further validation.

Deep learning-driven modality imputation and subregion segmentation to enhance high-grade glioma grading.

Yu J, Liu Q, Xu C, Zhou Q, Xu J, Zhu L, Chen C, Zhou Y, Xiao B, Zheng L, Zhou X, Zhang F, Ye Y, Mi H, Zhang D, Yang L, Wu Z, Wang J, Chen M, Zhou Z, Wang H, Wang VY, Wang E, Xu D

pubmed logopapersMay 30 2025
This study aims to develop a deep learning framework that leverages modality imputation and subregion segmentation to improve grading accuracy in high-grade gliomas. A retrospective analysis was conducted using data from 1,251 patients in the BraTS2021 dataset as the main cohort and 181 clinical cases collected from a medical center between April 2013 and June 2018 (51 years ± 17; 104 males) as the external test set. We propose a PatchGAN-based modality imputation network with an Aggregated Residual Transformer (ART) module combining Transformer self-attention and CNN feature extraction via residual links, paired with a U-Net variant for segmentation. Generative accuracy used PSNR and SSIM for modality conversions, while segmentation performance was measured with DSC and HD95 across necrotic core (NCR), edema (ED), and enhancing tumor (ET) regions. Senior radiologists conducted a comprehensive Likert-based assessment, with diagnostic accuracy evaluated by AUC. Statistical analysis was performed using the Wilcoxon signed-rank test and the DeLong test. The best source-target modality pairs for imputation were T1 to T1ce and T1ce to T2 (p < 0.001). In subregion segmentation, the overall DSC was 0.878 and HD95 was 19.491, with the ET region showing the highest segmentation accuracy (DSC: 0.877, HD95: 12.149). Clinical validation revealed an improvement in grading accuracy by the senior radiologist, with the AUC increasing from 0.718 to 0.913 (P < 0.001) when using the combined imputation and segmentation models. The proposed deep learning framework improves high-grade glioma grading by modality imputation and segmentation, aiding the senior radiologist and offering potential to advance clinical decision-making.

Deep learning enables fast and accurate quantification of MRI-guided near-infrared spectral tomography for breast cancer diagnosis.

Feng J, Tang Y, Lin S, Jiang S, Xu J, Zhang W, Geng M, Dang Y, Wei C, Li Z, Sun Z, Jia K, Pogue BW, Paulsen KD

pubmed logopapersMay 29 2025
The utilization of magnetic resonance (MR) im-aging to guide near-infrared spectral tomography (NIRST) shows significant potential for improving the specificity and sensitivity of breast cancer diagnosis. However, the ef-ficiency and accuracy of NIRST image reconstruction have been limited by the complexities of light propagation mod-eling and MRI image segmentation. To address these chal-lenges, we developed and evaluated a deep learning-based approach for MR-guided 3D NIRST image reconstruction (DL-MRg-NIRST). Using a network trained on synthetic data, the DL-MRg-NIRST system reconstructed images from data acquired during 38 clinical imaging exams of pa-tients with breast abnormalities. Statistical analysis of the results demonstrated a sensitivity of 87.5%, a specificity of 92.9%, and a diagnostic accuracy of 89.5% in distinguishing pathologically defined benign from malignant lesions. Ad-ditionally, the combined use of MRI and DL-MRg-NIRST di-agnoses achieved an area under the receiver operating characteristic (ROC) curve of 0.98. Remarkably, the DL-MRg-NIRST image reconstruction process required only 1.4 seconds, significantly faster than state-of-the-art MR-guided NIRST methods.

Deep Learning-Based Breast Cancer Detection in Mammography: A Multi-Center Validation Study in Thai Population

Isarun Chamveha, Supphanut Chaiyungyuen, Sasinun Worakriangkrai, Nattawadee Prasawang, Warasinee Chaisangmongkon, Pornpim Korpraphong, Voraparee Suvannarerg, Shanigarn Thiravit, Chalermdej Kannawat, Kewalin Rungsinaporn, Suwara Issaragrisil, Payia Chadbunchachai, Pattiya Gatechumpol, Chawiporn Muktabhant, Patarachai Sereerat

arxiv logopreprintMay 29 2025
This study presents a deep learning system for breast cancer detection in mammography, developed using a modified EfficientNetV2 architecture with enhanced attention mechanisms. The model was trained on mammograms from a major Thai medical center and validated on three distinct datasets: an in-domain test set (9,421 cases), a biopsy-confirmed set (883 cases), and an out-of-domain generalizability set (761 cases) collected from two different hospitals. For cancer detection, the model achieved AUROCs of 0.89, 0.96, and 0.94 on the respective datasets. The system's lesion localization capability, evaluated using metrics including Lesion Localization Fraction (LLF) and Non-Lesion Localization Fraction (NLF), demonstrated robust performance in identifying suspicious regions. Clinical validation through concordance tests showed strong agreement with radiologists: 83.5% classification and 84.0% localization concordance for biopsy-confirmed cases, and 78.1% classification and 79.6% localization concordance for out-of-domain cases. Expert radiologists' acceptance rate also averaged 96.7% for biopsy-confirmed cases, and 89.3% for out-of-domain cases. The system achieved a System Usability Scale score of 74.17 for source hospital, and 69.20 for validation hospitals, indicating good clinical acceptance. These results demonstrate the model's effectiveness in assisting mammogram interpretation, with the potential to enhance breast cancer screening workflows in clinical practice.

Super-temporal-resolution Photoacoustic Imaging with Dynamic Reconstruction through Implicit Neural Representation in Sparse-view

Youshen Xiao, Yiling Shi, Ruixi Sun, Hongjiang Wei, Fei Gao, Yuyao Zhang

arxiv logopreprintMay 29 2025
Dynamic Photoacoustic Computed Tomography (PACT) is an important imaging technique for monitoring physiological processes, capable of providing high-contrast images of optical absorption at much greater depths than traditional optical imaging methods. However, practical instrumentation and geometric constraints limit the number of acoustic sensors available around the imaging target, leading to sparsity in sensor data. Traditional photoacoustic (PA) image reconstruction methods, when directly applied to sparse PA data, produce severe artifacts. Additionally, these traditional methods do not consider the inter-frame relationships in dynamic imaging. Temporal resolution is crucial for dynamic photoacoustic imaging, which is fundamentally limited by the low repetition rate (e.g., 20 Hz) and high cost of high-power laser technology. Recently, Implicit Neural Representation (INR) has emerged as a powerful deep learning tool for solving inverse problems with sparse data, by characterizing signal properties as continuous functions of their coordinates in an unsupervised manner. In this work, we propose an INR-based method to improve dynamic photoacoustic image reconstruction from sparse-views and enhance temporal resolution, using only spatiotemporal coordinates as input. Specifically, the proposed INR represents dynamic photoacoustic images as implicit functions and encodes them into a neural network. The weights of the network are learned solely from the acquired sparse sensor data, without the need for external training datasets or prior images. Benefiting from the strong implicit continuity regularization provided by INR, as well as explicit regularization for low-rank and sparsity, our proposed method outperforms traditional reconstruction methods under two different sparsity conditions, effectively suppressing artifacts and ensuring image quality.
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