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MedPrompt: LLM-CNN Fusion with Weight Routing for Medical Image Segmentation and Classification

Shadman Sobhan, Kazi Abrar Mahmud, Abduz Zami

arxiv logopreprintJun 26 2025
Current medical image analysis systems are typically task-specific, requiring separate models for classification and segmentation, and lack the flexibility to support user-defined workflows. To address these challenges, we introduce MedPrompt, a unified framework that combines a few-shot prompted Large Language Model (Llama-4-17B) for high-level task planning with a modular Convolutional Neural Network (DeepFusionLab) for low-level image processing. The LLM interprets user instructions and generates structured output to dynamically route task-specific pretrained weights. This weight routing approach avoids retraining the entire framework when adding new tasks-only task-specific weights are required, enhancing scalability and deployment. We evaluated MedPrompt across 19 public datasets, covering 12 tasks spanning 5 imaging modalities. The system achieves a 97% end-to-end correctness in interpreting and executing prompt-driven instructions, with an average inference latency of 2.5 seconds, making it suitable for near real-time applications. DeepFusionLab achieves competitive segmentation accuracy (e.g., Dice 0.9856 on lungs) and strong classification performance (F1 0.9744 on tuberculosis). Overall, MedPrompt enables scalable, prompt-driven medical imaging by combining the interpretability of LLMs with the efficiency of modular CNNs.

Clinician-Led Code-Free Deep Learning for Detecting Papilloedema and Pseudopapilloedema Using Optic Disc Imaging

Shenoy, R., Samra, G. S., Sekhri, R., Yoon, H.-J., Teli, S., DeSilva, I., Tu, Z., Maconachie, G. D., Thomas, M. G.

medrxiv logopreprintJun 26 2025
ImportanceDifferentiating pseudopapilloedema from papilloedema is challenging, but critical for prompt diagnosis and to avoid unnecessary invasive procedures. Following diagnosis of papilloedema, objectively grading severity is important for determining urgency of management and therapeutic response. Automated machine learning (AutoML) has emerged as a promising tool for diagnosis in medical imaging and may provide accessible opportunities for consistent and accurate diagnosis and severity grading of papilloedema. ObjectiveThis study evaluates the feasibility of AutoML models for distinguishing the presence and severity of papilloedema using near infrared reflectance images (NIR) obtained from standard optical coherence tomography (OCT), comparing the performance of different AutoML platforms. Design, setting and participantsA retrospective cohort study was conducted using data from University Hospitals of Leicester, NHS Trust. The study involved 289 adults and children patients (813 images) who underwent optic nerve head-centred OCT imaging between 2021 and 2024. The dataset included patients with normal optic discs (69 patients, 185 images), papilloedema (135 patients, 372 images), and optic disc drusen (ODD) (85 patients, 256 images). AutoML platforms - Amazon Rekognition, Medic Mind (MM) and Google Vertex were evaluated for their ability to classify and grade papilloedema severity. Main outcomes and measuresTwo classification tasks were performed: (1) distinguishing papilloedema from normal discs and ODD; (2) grading papilloedema severity (mild/moderate vs. severe). Model performance was evaluated using area under the curve (AUC), precision, recall, F1 score, and confusion matrices for all six models. ResultsAmazon Rekognition outperformed the other platforms, achieving the highest AUC (0.90) and F1 score (0.81) in distinguishing papilloedema from normal/ODD. For papilloedema severity grading, Amazon Rekognition also performed best, with an AUC of 0.90 and F1 score of 0.79. Google Vertex and Medic Mind demonstrated good performance but had slightly lower accuracy and higher misclassification rates. Conclusions and relevanceThis evaluation of three widely available AutoML platforms using NIR images obtained from standard OCT shows promise in distinguishing and grading papilloedema. These models provide an accessible, scalable solution for clinical teams without coding expertise to feasibly develop intelligent diagnostic systems to recognise and characterise papilloedema. Further external validation and prospective testing is needed to confirm their clinical utility and applicability in diverse settings. Key PointsQuestion: Can clinician-led, code-free deep learning models using automated machine learning (AutoML) accurately differentiate papilloedema from pseudopapilloedema using optic disc imaging? Findings: Three widely available AutoML platforms were used to develop models that successfully distinguish the presence and severity of papilloedema on optic disc imaging, with Amazon Rekognition demonstrating the highest performance. Meaning: AutoML may assist clinical teams, even those with limited coding expertise, in diagnosing papilloedema, potentially reducing the need for invasive investigations.

Enhancing Diagnostic Precision: Utilising a Large Language Model to Extract U Scores from Thyroid Sonography Reports.

Watts E, Pournik O, Allington R, Ding X, Boelaert K, Sharma N, Ghalichi L, Arvanitis TN

pubmed logopapersJun 26 2025
This study evaluates the performance of ChatGPT-4, a Large Language Model (LLM), in automatically extracting U scores from free-text thyroid ultrasound reports collected from University Hospitals Birmingham (UHB), UK, between 2014 and 2024. The LLM was provided with guidelines on the U classification system and extracted U scores independently from 14,248 de-identified reports, without access to human-assigned scores. The LLM-extracted scores were compared to initial clinician-assigned and refined U scores provided by expert reviewers. The LLM achieved 97.7% agreement with refined human U scores, successfully identifying the highest U score in 98.1% of reports with multiple nodules. Most discrepancies (2.5%) were linked to ambiguous descriptions, multi-nodule reports, and cases with human-documented uncertainty. While the results demonstrate the potential for LLMs to improve reporting consistency and reduce manual workload, ethical and governance challenges such as transparency, privacy, and bias must be addressed before routine clinical deployment. Embedding LLMs into reporting workflows, such as Online Analytical Processing (OLAP) tools, could further enhance reporting quality and consistency.

Harnessing Generative AI for Lung Nodule Spiculation Characterization.

Wang Y, Patel C, Tchoua R, Furst J, Raicu D

pubmed logopapersJun 26 2025
Spiculation, characterized by irregular, spike-like projections from nodule margins, serves as a crucial radiological biomarker for malignancy assessment and early cancer detection. These distinctive stellate patterns strongly correlate with tumor invasiveness and are vital for accurate diagnosis and treatment planning. Traditional computer-aided diagnosis (CAD) systems are limited in their capability to capture and use these patterns given their subtlety, difficulty in quantifying them, and small datasets available to learn these patterns. To address these challenges, we propose a novel framework leveraging variational autoencoders (VAE) to discover, extract, and vary disentangled latent representations of lung nodule images. By gradually varying the latent representations of non-spiculated nodule images, we generate augmented datasets containing spiculated nodule variations that, we hypothesize, can improve the diagnostic classification of lung nodules. Using the National Institutes of Health/National Cancer Institute Lung Image Database Consortium (LIDC) dataset, our results show that incorporating these spiculated image variations into the classification pipeline significantly improves spiculation detection performance up to 7.53%. Notably, this enhancement in spiculation detection is achieved while preserving the classification performance of non-spiculated cases. This approach effectively addresses class imbalance and enhances overall classification outcomes. The gradual attenuation of spiculation characteristics demonstrates our model's ability to both capture and generate clinically relevant semantic features in an algorithmic manner. These findings suggest that the integration of semantic-based latent representations into CAD models not only enhances diagnostic accuracy but also provides insights into the underlying morphological progression of spiculated nodules, enabling more informed and clinically meaningful AI-driven support systems.

Deep transfer learning radiomics combined with explainable machine learning for preoperative thymoma risk prediction based on CT.

Wu S, Fan L, Wu Y, Xu J, Guo Y, Zhang H, Xu Z

pubmed logopapersJun 26 2025
To develop and validate a computerized tomography (CT)‑based deep transfer learning radiomics model combined with explainable machine learning for preoperative risk prediction of thymoma. This retrospective study included 173 pathologically confirmed thymoma patients from our institution in the training group and 93 patients from two external centers in the external validation group. Tumors were classified according to the World Health Organization simplified criteria as low‑risk types (A, AB, and B1) or high‑risk types (B2 and B3). Radiomics features and deep transfer learning features were extracted from venous‑phase contrast‑enhanced CT images by using a modified Inception V3 network. Principal component analysis and least absolute shrinkage and selection operator regression identified 20 key predictors. Six classifiers-decision tree, gradient boosting machine, k‑nearest neighbors, naïve Bayes, random forest (RF), and support vector machine-were trained on five feature sets: CT imaging model, radiomics feature model, deep transfer learning feature model, combined feature model, and combined model. Interpretability was assessed with SHapley Additive exPlanations (SHAP), and an interactive web application was developed for real‑time individualized risk prediction and visualization. In the external validation group, the RF classifier achieved the highest area under the receiver operating characteristic curve (AUC) value of 0.956. In the training group, the AUC values for the CT imaging model, radiomics feature model, deep transfer learning feature model, combined feature model, and combined model were 0.684, 0.831, 0.815, 0.893, and 0.910, respectively. The corresponding AUC values in the external validation group were 0.604, 0.865, 0.880, 0.934, and 0.956, respectively. SHAP visualizations revealed the relative contribution of each feature, while the web application provided real‑time individual prediction probabilities with interpretative outputs. We developed a CT‑based deep transfer learning radiomics model combined with explainable machine learning and an interactive web application; this model achieved high accuracy and transparency for preoperative thymoma risk stratification, facilitating personalized clinical decision‑making.

Recent Advances in Generative Models for Synthetic Brain MRI Image Generation.

Ding X, Bai L, Abbasi SF, Pournik O, Arvanitis T

pubmed logopapersJun 26 2025
With the use of artificial intelligence (AI) for image analysis of Magnetic Resonance Imaging (MRI), the lack of training data has become an issue. Realistic synthetic MRI images can serve as a solution and generative models have been proposed. This study investigates the most recent advances on synthetic brain MRI image generation with AI-based generative models. A search has been conducted on the relevant studies published within the last three years, followed by a narrative review on the identified articles. Popular models from the search results have been discussed in this study, including Generative Adversarial Networks (GANs), diffusion models, Variational Autoencoders (VAEs), and transformers.

Self-supervised learning for MRI reconstruction: a review and new perspective.

Li X, Huang J, Sun G, Yang Z

pubmed logopapersJun 26 2025
To review the latest developments in self-supervised deep learning (DL) techniques for magnetic resonance imaging (MRI) reconstruction, emphasizing their potential to overcome the limitations of supervised methods dependent on fully sampled k-space data. While DL has significantly advanced MRI, supervised approaches require large amounts of fully sampled k-space data for training-a major limitation given the impracticality and expense of acquiring such data clinically. Self-supervised learning has emerged as a promising alternative, enabling model training using only undersampled k-space data, thereby enhancing feasibility and driving research interest. We conducted a comprehensive literature review to synthesize recent progress in self-supervised DL for MRI reconstruction. The analysis focused on methods and architectures designed to improve image quality, reduce scanning time, and address data scarcity challenges, drawing from peer-reviewed publications and technical innovations in the field. Self-supervised DL holds transformative potential for MRI reconstruction, offering solutions to data limitations while maintaining image quality and accelerating scans. Key challenges include robustness across diverse anatomies, standardization of validation, and clinical integration. Future research should prioritize hybrid methodologies, domain-specific adaptations, and rigorous clinical validation. This review consolidates advancements and unresolved issues, providing a foundation for next-generation medical imaging technologies.

Contrast-enhanced image synthesis using latent diffusion model for precise online tumor delineation in MRI-guided adaptive radiotherapy for brain metastases.

Ma X, Ma Y, Wang Y, Li C, Liu Y, Chen X, Dai J, Bi N, Men K

pubmed logopapersJun 25 2025
&#xD;Magnetic resonance imaging-guided adaptive radiotherapy (MRIgART) is a promising technique for long-course RT of large-volume brain metastasis (BM), due to the capacity to track tumor changes throughout treatment course. Contrast-enhanced T1-weighted (T1CE) MRI is essential for BM delineation, yet is often unavailable during online treatment concerning the requirement of contrast agent injection. This study aims to develop a synthetic T1CE (sT1CE) generation method to facilitate accurate online adaptive BM delineation.&#xD;Approach:&#xD;We developed a novel ControlNet-coupled latent diffusion model (CTN-LDM) combined with a personalized transfer learning strategy and a denoising diffusion implicit model (DDIM) inversion method to generate high quality sT1CE images from online T2-weighted (T2) or fluid attenuated inversion recovery (FLAIR) images. Visual quality of sT1CE images generated by the CTN-LDM was compared with classical deep learning models. BM delineation results using the combination of our sT1CE images and online T2/FLAIR images were compared with the results solely using online T2/FLAIR images, which is the current clinical method.&#xD;Main results:&#xD;Visual quality of sT1CE images from our CTN-LDM was superior to classical models both quantitatively and qualitatively. Leveraging sT1CE images, radiation oncologists achieved significant higher precision of adaptive BM delineation, with average Dice similarity coefficient of 0.93 ± 0.02 vs. 0.86 ± 0.04 (p < 0.01), compared with only using online T2/FLAIR images. &#xD;Significance:&#xD;The proposed method could generate high quality sT1CE images and significantly improve accuracy of online adaptive tumor delineation for long-course MRIgART of large-volume BM, potentially enhancing treatment outcomes and minimizing toxicity.

BronchoGAN: anatomically consistent and domain-agnostic image-to-image translation for video bronchoscopy.

Soliman A, Keuth R, Himstedt M

pubmed logopapersJun 25 2025
Purpose The limited availability of bronchoscopy images makes image synthesis particularly interesting for training deep learning models. Robust image translation across different domains-virtual bronchoscopy, phantom as well as in vivo and ex vivo image data-is pivotal for clinical applications. Methods This paper proposes BronchoGAN introducing anatomical constraints for image-to-image translation being integrated into a conditional GAN. In particular, we force bronchial orifices to match across input and output images. We further propose to use foundation model-generated depth images as intermediate representation ensuring robustness across a variety of input domains establishing models with substantially less reliance on individual training datasets. Moreover, our intermediate depth image representation allows to easily construct paired image data for training. Results Our experiments showed that input images from different domains (e.g., virtual bronchoscopy, phantoms) can be successfully translated to images mimicking realistic human airway appearance. We demonstrated that anatomical settings (i.e., bronchial orifices) can be robustly preserved with our approach which is shown qualitatively and quantitatively by means of improved FID, SSIM and dice coefficients scores. Our anatomical constraints enabled an improvement in the Dice coefficient of up to 0.43 for synthetic images. Conclusion Through foundation models for intermediate depth representations and bronchial orifice segmentation integrated as anatomical constraints into conditional GANs, we are able to robustly translate images from different bronchoscopy input domains. BronchoGAN allows to incorporate public CT scan data (virtual bronchoscopy) in order to generate large-scale bronchoscopy image datasets with realistic appearance. BronchoGAN enables to bridge the gap of missing public bronchoscopy images.

Integrating handheld ultrasound in rheumatology: A review of benefits and drawbacks.

Sabido-Sauri R, Eder L, Emery P, Aydin SZ

pubmed logopapersJun 25 2025
Musculoskeletal ultrasound is a key tool in rheumatology for diagnosing and managing inflammatory arthritis. Traditional ultrasound systems, while effective, can be cumbersome and costly, limiting their use in many clinical settings. Handheld ultrasound (HHUS) devices, which are portable, affordable, and user-friendly, have emerged as a promising alternative. This review explores the role of HHUS in rheumatology, specifically evaluating its impact on diagnostic accuracy, ease of use, and utility in screening for inflammatory arthritis. The review also addresses key challenges, such as image quality, storage and data security, and the potential for integrating artificial intelligence to improve device performance. We compare HHUS devices to cart-based ultrasound machines, discuss their advantages and limitations, and examine the potential for widespread adoption. Our findings suggest that HHUS devices can effectively support musculoskeletal assessments and offer significant benefits in resource-limited settings. However, proper training, standardized protocols, and continued technological advancements are essential for optimizing their use in clinical practice.
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