High-resolution magnetic resonance imaging (MRI) is essential for diagnosing and treating brain diseases. Transformer-based approaches demonstrate strong potential in MRI super-resolution by capturing long-range dependencies effectively. However, existing Transformer-based super-resolution methods face several challenges: (1) they primarily focus on low-frequency information, neglecting the utilization of high-frequency information; (2) they lack effective mechanisms to integrate both low-frequency and high-frequency information; (3) they struggle to effectively eliminate redundant information during the reconstruction process. To address these issues, we propose the Cross-fusion Adaptive Feature Enhancement Transformer (CAFET). Our model maximizes the potential of both CNNs and Transformers. It consists of four key blocks: a high-frequency enhancement block for extracting high-frequency information; a hybrid attention block for capturing global information and local fitting, which includes channel attention and shifted rectangular window attention; a large-window fusion attention block for integrating local high-frequency features and global low-frequency features; and an adaptive sparse overlapping attention block for dynamically retaining key information and enhancing the aggregation of cross-window features. Extensive experiments validate the effectiveness of the proposed method. On the BraTS and IXI datasets, with an upsampling factor of ×2, the proposed method achieves a maximum PSNR improvement of 2.4 dB and 1.3 dB compared to state-of-the-art methods, along with an SSIM improvement of up to 0.16% and 1.42%. Similarly, at an upsampling factor of ×4, the proposed method achieves a maximum PSNR improvement of 1.04 dB and 0.3 dB over the current leading methods, along with an SSIM improvement of up to 0.25% and 1.66%. Our method is capable of reconstructing high-quality super-resolution brain MRI images, demonstrating significant clinical potential.

To introduce MATI (Microstructural Analysis Toolbox for Imaging), a versatile MATLAB-based toolbox that combines both simulation and data fitting capabilities for microstructural dMRI research. MATI provides a user-friendly, graphical user interface that enables researchers, including those without much programming experience, to perform advanced simulations and data analyses for microstructural MRI research. For simulation, MATI supports arbitrary microstructural tissues and pulse sequences. For data fitting, MATI supports a range of fitting methods, including traditional non-linear least squares, Bayesian approaches, machine learning, and dictionary matching methods, allowing users to tailor analyses based on specific research needs. Optimized with vectorized matrix operations and high-performance numerical libraries, MATI achieves high computational efficiency, enabling rapid simulations and data fitting on CPU and GPU hardware. While designed for microstructural dMRI, MATI's generalized framework can be extended to other imaging methods, making it a flexible and scalable tool for quantitative MRI research. MATI offers a significant step toward translating advanced microstructural MRI techniques into clinical applications.

Alzheimer's disease (AD) is a neurodegenerative disorder characterized by a progressive cognitive decline, necessitating early diagnosis for effective treatment. This study presents the Relational Bi-level Aggregation Graph Convolutional Network with Dynamic Graph Learning and Puzzle Optimization for Alzheimer's Classification (RBAGCN-DGL-PO-AC), using denoised T1-weighted Magnetic Resonance Images (MRIs) collected from Alzheimer's Disease Neuroimaging Initiative (ADNI) repository. Addressing the impact of noise in medical imaging, the method employs advanced denoising techniques includes: the Modified Spline-Kernelled Chirplet Transform (MSKCT), Jump Gain Integral Recurrent Neural Network (JGIRNN), and Newton Time Extracting Wavelet Transform (NTEWT), to enhance the image quality. Key brain regions, crucial for classification such as hippocampal, lateral ventricle and posterior cingulate cortex are segmented using Attention Guided Generalized Intuitionistic Fuzzy C-Means Clustering (AG-GIFCMC). Feature extraction and classification using segmented outputs are performed with RBAGCN-DGL and puzzle optimization, categorize input images into Healthy Controls (HC), Early Mild Cognitive Impairment (EMCI), Late Mild Cognitive Impairment (LMCI), and Alzheimer's Disease (AD). To assess the effectiveness of the proposed method, we systematically examined the structural modifications to the RBAGCN-DGL-PO-AC model through extensive ablation studies. Experimental findings highlight that RBAGCN-DGL-PO-AC state-of-the art performance, with 99.25 % accuracy, outperforming existing methods including MSFFGCN_ADC, CNN_CAD_DBMRI, and FCNN_ADC, while reducing training time by 28.5 % and increasing inference speed by 32.7 %. Hence, the RBAGCN-DGL-PO-AC method enhances AD classification by integrating denoising, segmentation, and dynamic graph-based feature extraction, achieving superior accuracy and making it a valuable tool for clinical applications, ultimately improving patient outcomes and disease management.

To develop machine learning (ML) models incorporating explanatory cardiac magnetic resonance (CMR) parameters for predicting the prognosis of myocarditis in pediatric patients. 77 patients with pediatric myocarditis diagnosed clinically between January 2020 and December 2023 were enrolled retrospectively. All patients were examined by ultrasound, electrocardiogram (ECG), serum biomarkers on admission, and CMR scan to obtain 16 explanatory CMR parameters. All patients underwent follow-up echocardiography and CMR. Patients were divided into two groups according to the occurrence of adverse cardiac events (ACE) during follow-up: the poor prognosis group (n = 23) and the good prognosis group (n = 54). Four models were established, including logistic regression (LR), random forest (RF), support vector machine classifier (SVC), and extreme gradient boosting (XGBoost) model. The performance of each model was evaluated by the area under the receiver operating characteristic curve (AUC). Model interpretation was generated by Shapley additive interpretation (Shap). Among the four models, the three most important features were late gadolinium enhancement (LGE), left ventricular ejection fraction (LVEF), and SAXPeak Global Circumferential Strain (SAXGCS). In addition, LGE, LVEF, SAXGCS, and LAXPeak Global Longitudinal Strain (LAXGLS) were selected as the key predictors for all four models. Four interpretable CMR parameters were extracted, among which the LR model had the best prediction performance. The AUC, sensitivity, and specificity were 0.893, 0.820, and 0.944, respectively. The findings indicate that the presence of LGE on CMR imaging, along with reductions in LVEF, SAXGCS, and LAXGLS, are predictive of poor prognosis in patients with acute myocarditis. ML models, particularly the LR model, demonstrate the potential to predict the prognosis of children with myocarditis. These findings provide valuable insights for cardiologists, supporting more informed clinical decision-making and potentially enhancing patient outcomes in pediatric myocarditis cases.

To develop and validate an interpretable machine learning model based on clinicoradiological features and radiomic features based on magnetic resonance imaging (MRI) to predict the failure of conservative treatment in lateral epicondylitis (LE). This retrospective study included 420 patients with LE from three hospitals, divided into a training cohort (n = 245), an internal validation cohort (n = 115), and an external validation cohort (n = 60). Patients were categorized into conservative treatment failure (n = 133) and conservative treatment success (n = 287) groups based on the outcome of conservative treatment. We developed two predictive models: one utilizing clinicoradiological features, and another integrating clinicoradiological and radiomic features. Seven machine learning algorithms were evaluated to determine the optimal model for predicting the failure of conservative treatment. Model performance was assessed using ROC, and model interpretability was examined using SHapley Additive exPlanations (SHAP). The LightGBM algorithm was selected as the optimal model because of its superior performance. The combined model demonstrated enhanced predictive accuracy with an area under the ROC curve (AUC) of 0.96 (95% CI: 0.91, 0.99) in the external validation cohort. SHAP analysis identified the radiological feature "CET coronal tear size" and the radiomic feature "AX_log-sigma-1-0-mm-3D_glszm_SmallAreaEmphasis" as key predictors of conservative treatment failure. We developed and validated an interpretable LightGBM machine learning model that integrates clinicoradiological and radiomic features to predict the failure of conservative treatment in LE. The model demonstrates high predictive accuracy and offers valuable insights into key prognostic factors.

Image-derived machine learning (ML) is a robust and growing field in diagnostic imaging systems for both clinicians and radiologists. Accurate preoperative radiological evaluation of the invasive ability of endometrial cancer (EC) can increase the degree of clinical benefit. The present study aimed to investigate the diagnostic performance of magnetic resonance imaging (MRI)-derived artificial intelligence for accurate preoperative assessment of the invasive risk. The PubMed, Embase, Cochrane Library and Web of Science databases were searched, and pertinent English-language papers were collected. The pooled sensitivity, specificity, diagnostic odds ratio (DOR), and positive and negative likelihood ratios (PLR and NLR, respectively) of all the papers were calculated using Stata software. The results were plotted on a summary receiver operating characteristic (SROC) curve, publication bias and threshold effects were evaluated, and meta-regression and subgroup analyses were conducted to explore the possible causes of intratumoral heterogeneity. MRI-based radiomics revealed pooled sensitivity (SEN) and specificity (SPE) values of 0.85 and 0.82 for the prediction of high-grade EC; 0.80 and 0.85 for deep myometrial invasion (DMI); 0.85 and 0.73 for lymphovascular space invasion (LVSI); 0.79 and 0.85 for microsatellite instability (MSI); and 0.90 and 0.72 for lymph node metastasis (LNM), respectively. For LVSI prediction and high-grade histological analysis, meta-regression revealed that the image segmentation and MRI-based radiomics modeling contributed to heterogeneity (p = 0.003 and 0.04). Through a systematic review and meta-analysis of the reported literature, preoperative MRI-derived ML could help clinicians accurately evaluate EC risk factors, potentially guiding individual treatment thereafter.

AI-based MRI reconstruction techniques improve efficiency by reducing acquisition times whilst maintaining or improving image quality. Recent recommendations from professional bodies suggest centres should perform quality assessments on AI tools. However, monitoring long-term performance presents challenges, due to model drift or system updates. Radiologist-based assessments are resource-intensive and may be subjective, highlighting the need for efficient quality control (QC) measures. This study explores using image quality metrics (IQMs) to assess AI-based reconstructions. 58 patients undergoing standard-of-care rectal MRI were imaged using AI-based and conventional T2-weighted sequences. Paired and unpaired IQMs were calculated. Sensitivity of IQMs to detect retrospective perturbations in AI-based reconstructions was assessed using control charts, and statistical comparisons between the four MR systems in the evaluation were performed. Two radiologists evaluated the image quality of the perturbed images, giving an indication of their clinical relevance. Paired IQMs demonstrated sensitivity to changes in AI-reconstruction settings, identifying deviations outside ± 2 standard deviations of the reference dataset. Unpaired metrics showed less sensitivity. Paired IQMs showed no difference in performance between 1.5 T and 3 T systems (p > 0.99), whilst minor but significant (p < 0.0379) differences were noted for unpaired IQMs. IQMs are effective for QC of AI-based MR reconstructions, offering resource-efficient alternatives to repeated radiologist evaluations. Future work should expand this to other imaging applications and assess additional measures.

Different types of sports training can induce distinct changes in brain activity and function; however, it remains unclear if there are commonalities across various sports disciplines. Moreover, the relationship between these brain activity alterations and the duration of sports training requires further investigation. This study employed resting-state functional magnetic resonance imaging (rs-fMRI) techniques to analyze spontaneous brain activity using the amplitude of low-frequency fluctuations (ALFF) and fractional amplitude of low-frequency fluctuations (fALFF) in 86 highly trained athletes compared to 74 age- and gender-matched non-athletes. Our findings revealed significantly higher ALFF values in the Insula_R (Right Insula), OFCpost_R (Right Posterior orbital gyrus), and OFClat_R (Right Lateral orbital gyrus) in athletes compared to controls, whereas fALFF in the Postcentral_R (Right Postcentral) was notably higher in controls. Additionally, we identified a significant negative correlation between fALFF values in the Postcentral_R of athletes and their years of professional training. Utilizing machine learning algorithms, we achieved accurate classification of brain activity patterns distinguishing athletes from non-athletes with over 96.97% accuracy. These results suggest that the functional reorganization observed in athletes' brains may signify an adaptation to prolonged training, potentially reflecting enhanced processing efficiency. This study emphasizes the importance of examining the impact of long-term sports training on brain function, which could influence cognitive and sensory systems crucial for optimal athletic performance. Furthermore, machine learning methods could be used in the future to select athletes based on differences in brain activity.

High-quality 3D fetal brain MRI reconstruction from motion-corrupted 2D slices is crucial for clinical diagnosis. Reliable slice-to-volume registration (SVR)-based motion correction and super-resolution reconstruction (SRR) methods are essential. Deep learning (DL) has demonstrated potential in enhancing SVR and SRR when compared to conventional methods. However, it requires large-scale external training datasets, which are difficult to obtain for clinical fetal MRI. To address this issue, we propose an unsupervised iterative SVR-SRR framework for isotropic HR volume reconstruction. Specifically, SVR is formulated as a function mapping a 2D slice and a 3D target volume to a rigid transformation matrix, which aligns the slice to the underlying location in the target volume. The function is parameterized by a convolutional neural network, which is trained by minimizing the difference between the volume slicing at the predicted position and the input slice. In SRR, a decoding network embedded within a deep image prior framework is incorporated with a comprehensive image degradation model to produce the high-resolution (HR) volume. The deep image prior framework offers a local consistency prior to guide the reconstruction of HR volumes. By performing a forward degradation model, the HR volume is optimized by minimizing loss between predicted slices and the observed slices. Comprehensive experiments conducted on large-magnitude motion-corrupted simulation data and clinical data demonstrate the superior performance of the proposed framework over state-of-the-art fetal brain reconstruction frameworks.

The explosive growth of available high-quality imaging data coupled with new progress in hardware capabilities has enabled a new era of unprecedented performance in brain segmentation tasks. Despite the explosion of new data released by consortiums and groups around the world, most published, closed, or openly available segmentation models have either a limited or an unknown role in pediatric brains. This study explores the utility of state-of-the-art automated ventricular segmentation tools applied to pediatric hydrocephalus. Two popular, fast, whole-brain segmentation tools were used (FastSurfer and QuickNAT) to automatically segment the lateral ventricles and evaluate their accuracy in children with hydrocephalus. Forty scans from 32 patients were included in this study. The patients underwent imaging at the University of Minnesota Medical Center or satellite clinics, were between 0 and 18 years old, had an ICD-10 diagnosis that included the word hydrocephalus, and had at least one T1-weighted pre- or postcontrast MPRAGE sequence. Patients with poor quality scans were excluded. Dice similarity coefficient (DSC) scores were used to compare segmentation outputs against manually segmented lateral ventricles. Overall, both models performed poorly with DSCs of 0.61 for each segmentation tool. No statistically significant difference was noted between model performance (p = 0.86). Using a multivariate linear regression to examine factors associated with higher DSC performance, male gender (p = 0.66), presence of ventricular catheter (p = 0.72), and MRI magnet strength (p = 0.23) were not statistically significant factors. However, younger age (p = 0.03) and larger ventricular volumes (p = 0.01) were significantly associated with lower DSC values. A large-scale visualization of 196 scans in both models showed characteristic patterns of segmentation failure in larger ventricles. Significant gaps exist in current cutting-edge segmentation models when applied to pediatric hydrocephalus. Researchers will need to address these types of gaps in performance through thoughtful consideration of their training data before reaching the ultimate goal of clinical deployment.