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Sun Y, Li Y, Li M, Hu T, Wang J

pubmed logopapersSep 30 2025
Pancreatic cancer is one of the most aggressive and lethal malignancies of the digestive system and is characterized by an extremely low five-year survival rate. The perineural invasion (PNI) status in patients with pancreatic cancer is positively correlated with adverse prognoses, including overall survival and recurrence-free survival. Emerging radiomic methods can reveal subtle variations in tumor structure by analyzing preoperative contrast-enhanced computed tomography (CECT) imaging data. Therefore, we propose the development of a preoperative CECT-based radiomic model to predict the risk of PNI in patients with pancreatic cancer. This study enrolled patients with pancreatic malignancies who underwent radical resection. Computerized tools were employed to extract radiomic features from tumor regions of interest (ROIs). The optimal radiomic features associated with PNI were selected to construct a radiomic score (RadScore). The model's reliability was comprehensively evaluated by integrating clinical and follow-up information, with SHapley Additive exPlanations (SHAP)-based visualization to interpret the decision-making processes. A total of 167 patients with pancreatic malignancies were included. From the CECT images, 851 radiomic features were extracted, 22 of which were identified as most strongly correlated with PNI. These 22 features were evaluated using seven machine learning methods. We ultimately selected the Gaussian naive Bayes model, which demonstrated robust predictive performance in both the training and validation cohorts, and achieved area under the ROC curve (AUC) values of 0.899 and 0.813, respectively. Among the clinical features, maximum tumor diameter, CA-199 level, blood glucose concentration, and lymph node metastasis were found to be independent risk factors for PNI. The integrated model yielded AUCs of 0.945 (training cohort) and 0.881 (validation cohort). Decision curve analysis confirmed the clinical utility of the ensemble model to predict perineural invasion. The combined model integrating clinical and radiomic features exhibited excellent performance in predicting the probability of perineural invasion in patients with pancreatic cancer. This approach has significant potential to optimize therapeutic decision-making and prognostic evaluation in patients with PNI.

Chassagnon G, Marini R, Ong V, Da Silva J, Habip Gatenyo D, Honore I, Kanaan R, Carlier N, Fesenbeckh J, Burnet E, Revel MP, Martin C, Burgel PR

pubmed logopapersSep 30 2025
The purpose of this study was to evaluate the relationship between structural abnormalities on CT and lung function prior to and after initiation of elexacaftor-tezacaftor-ivacaftor (ETI) in adults with cystic fibrosis (CF) using a deep learning model. A deep learning quantification model was developed using 100 chest computed tomography (CT) examinations of patients with CF and 150 chest CT examinations of patients with various other bronchial diseases to quantify seven types of abnormalities. This model was then applied to an independent dataset of CT examinations of 218 adults with CF who were treated with ETI. The relationship between structural abnormalities and percent predicted forced expiratory volume in one second (ppFEV<sub>1</sub>) was examined using general linear regression models. The deep learning model performed as well as radiologists for the quantification of the seven types of abnormalities. Chest CT examinations obtained before to and one year after the initiation of ETI were analyzed. The independent structural predictors of ppFEV<sub>1</sub> prior to ETI were bronchial wall thickening (P = 0.011), mucus plugging (P < 0.001), consolidation/atelectasis (P < 0.001), and mosaic perfusion (P < 0.001). An increase in ppFEV<sub>1</sub> after initiation of ETI independently correlated with a decrease in bronchial wall thicknening (-49 %; P = 0.004), mucus plugging (-92 %; P < 0.001), centrilobular nodules (-78 %; P = 0.009) and mosaic perfusion (-14 %; P < 0.001). Younger age (P < 0.001), greater mucus plugging extent (P = 0.016), and centrilobular nodules (P < 0.001) prior to ETI initiation were independent predictors of ppFEV<sub>1</sub> improvement. A deep learning model can quantify CT lung abnormalities in adults with CF. Lung function impairment in adults with CF is associated with muco-inflammatory lesions on CT, which are largely reversible with ETI, and with mosaic perfusion, which appear less reversible and is presumably related to irreversible damage. Predictors of lung function improvement are a younger age and a greater extent of muco-inflammatory lesions obstructing the airways.

Miao Y, Wang J, Li X, Guo J, Ekblom MM, Sindi S, Zhang Q, Dove A

pubmed logopapersSep 30 2025
Poor-quality sleep has been linked to increased dementia risk. We investigated the relationship between healthy sleep pattern and older brain age, and the extent to which this is mediated by systemic inflammation. The study included 27,500 adults from the UK Biobank (mean age 54.7 y, 54.0% female). The presence of five self-reported healthy sleep characteristics (early chronotype, 7-8 h daily sleep, no insomnia, no snoring, no excessive daytime sleepiness) were summed into a healthy sleep score (0-5 pts) and used to define three sleep patterns: healthy (≥4 pts), intermediate (2-3 pts), and poor (≤1 pt). Low-grade inflammation was estimated using the INFLA-score, a composite index of inflammatory biomarkers. After a mean follow-up of 8.9 y, brain age was estimated using a machine learning model based on 1079 brain MRI phenotypes and used to calculate brain age gap (BAG; i.e., brain age minus chronological age). Data were analysed using linear regression and generalised structural equation models. At baseline, 898 (3.3%) participants had poor sleep, 15,283 (55.6%) had intermediate sleep, and 11,319 (41.2%) had healthy sleep. Compared to healthy sleep, intermediate (β = 0.25 [0.11, 0.40], P = 0.010) and poor (β = 0.46 [0.05, 0.87], P < 0.001) sleep were associated with significantly higher BAG. In mediation analysis, INFLA-score mediated 6.81% and 10.42% of the associations between intermediate and poor sleep and higher BAG. Poor sleep health may accelerate brain ageing. This may be driven by higher levels of systemic inflammation. Alzheimerfonden; Demensfonden; Loo and Hans Osterman Foundation for Medical Research; the Knowledge Foundation; Swedish Research Council.

Kim YT, Bak SH, Han SS, Son Y, Park J

pubmed logopapersSep 30 2025
Acute pulmonary embolism (PE) is a life-threatening condition often diagnosed using CT pulmonary angiography (CTPA). However, CTPA is contraindicated in patients with contrast allergies or at risk for contrast-induced nephropathy. This study explores an AI-driven approach to generate synthetic contrast-enhanced images from non-contrast CT scans for accurate diagnosis of acute PE without contrast agents. This retrospective study used dual-energy and standard CT datasets from two institutions. The internal dataset included 84 patients: 41 PE-negative cases for generative model training and 43 patients (30 PE-positive) for diagnostic evaluation. An external dataset of 62 patients (26 PE-positive) was used for further validation. We developed a generative adversarial network (GAN) based on U-Net, trained on paired non-contrast and contrast-enhanced images. The model was optimized using contrast-enhanced L1-loss with hyperparameter λ to improve anatomical accuracy. A ConvNeXt-based classifier trained on the RSNA dataset (N = 7,122) generated per-slice PE probabilities, which were aggregated for patient-level prediction via a Random Forest model. Diagnostic performance was assessed using five-fold cross-validation on both internal and external datasets. The GAN achieved optimal image similarity at λ = 0.5, with the lowest mean absolute error (0.0089) and highest MS-SSIM (0.9674). PE classification yielded AUCs of 0.861 and 0.836 in the internal dataset, and 0.787 and 0.680 in the external dataset, using real and synthetic images, respectively. No statistically significant differences were observed. Our findings demonstrate that synthetic contrast CT can serve as a viable alternative for PE diagnosis in patients contraindicated for CTPA, supporting safe and accessible imaging strategies.

Hao J, Shah NS, Zhou B

pubmed logopapersSep 30 2025
Coronary artery calcium (CAC) scoring plays a pivotal role in assessing the risk for cardiovascular disease events to guide the intensity of cardiovascular disease preventive efforts. Accurate CAC scoring from gated cardiac Computed Tomography (CT) relies on precise segmentation of calcification. However, the small size, irregular shape, and sparse distribution of calcification in 3D volumes present significant challenges for automated CAC assessment. Training reliable automatic segmentation models typically requires large-scale annotated datasets, yet the annotation process is resource-intensive, requiring highly trained specialists. To address this limitation, we propose S<sup>2</sup>CAC, a semi-supervised learning framework for CAC segmentation that achieves robust performance with minimal labeled data. First, we design a dual-path hybrid transformer architecture that jointly optimizes pixel-level segmentation and volume-level scoring through feature symbiosis, minimizing the information loss caused by down-sampling operations and enhancing the model's ability to preserve fine-grained calcification details. Second, we introduce a scoring-driven consistency mechanism that aligns pixel-level segmentation with volume-level CAC scores through differentiable score estimation, effectively leveraging unlabeled data. Third, we address the challenge of incorporating negative samples (cases without CAC) into training. Directly using these samples risks model collapse, as the sparse nature of CAC regions may lead the model to predict all-zero maps. To mitigate this, we design a dynamic weighted loss function that integrates negative samples into the training process while preserving the model's sensitivity to calcification. This approach effectively reduces over-segmentation and enhances overall model performance. We validate our framework on two public non-contrast gated CT datasets, achieving state-of-the-art performance over previous baseline methods. Additionally, the Agatston scores derived from our segmentation maps demonstrate strong concordance with manual annotations. These results highlight the potential of our approach to reduce dependence on annotated data while maintaining high accuracy in CAC scoring. Code and trained model weights are available at: https://github.com/JinkuiH/S2CAC.

Cesur T, Gunes YC, Camur E, Dağli M

pubmed logopapersSep 30 2025
This study evaluated the diagnostic accuracy and differential diagnostic capabilities of 12 Large Language Models (LLMs), one cardiac radiologist, and 3 general radiologists in cardiac radiology. The impact of the ChatGPT-4o assistance on radiologist performance was also investigated. We collected publicly available 80 "Cardiac Case of the Month" from the Society of Thoracic Radiology website. LLMs and Radiologist-III were provided with text-based information, whereas other radiologists visually assessed the cases with and without the ChatGPT-4o assistance. Diagnostic accuracy and differential diagnosis scores (DDx scores) were analyzed using the χ2, Kruskal-Wallis, Wilcoxon, McNemar, and Mann-Whitney U tests. The unassisted diagnostic accuracy of the cardiac radiologist was 72.5%, general radiologist-I was 53.8%, and general radiologist-II was 51.3%. With ChatGPT-4o, the accuracy improved to 78.8%, 70.0%, and 63.8%, respectively. The improvements for general radiologists-I and II were statistically significant (P≤0.006). All radiologists' DDx scores improved significantly with ChatGPT-4o assistance (P≤0.05). Remarkably, Radiologist-I's GPT-4o-assisted diagnostic accuracy and DDx score were not significantly different from the Cardiac Radiologist's unassisted performance (P>0.05).Among the LLMs, Claude 3 Opus and Claude 3.5 Sonnet had the highest accuracy (81.3%), followed by Claude 3 Sonnet (70.0%). Regarding the DDx score, Claude 3 Opus outperformed all models and radiologist-III (P<0.05). The accuracy of the general radiologist-III significantly improved from 48.8% to 63.8% with GPT4o assistance (P<0.001). ChatGPT-4o may enhance the diagnostic performance of general radiologists in cardiac imaging, suggesting its potential as a diagnostic support tool. Further studies are required to assess the clinical integration.

Naomi Fridman, Anat Goldstein

arxiv logopreprintSep 30 2025
Breast magnetic resonance imaging is a critical tool for cancer detection and treatment planning, but its clinical utility is hindered by poor specificity, leading to high false-positive rates and unnecessary biopsies. This study introduces a transformer-based framework for automated classification of breast lesions in dynamic contrast-enhanced MRI, addressing the challenge of distinguishing benign from malignant findings. We implemented a SegFormer architecture that achieved an AUC of 0.92 for lesion-level classification, with 100% sensitivity and 67% specificity at the patient level - potentially eliminating one-third of unnecessary biopsies without missing malignancies. The model quantifies malignant pixel distribution via semantic segmentation, producing interpretable spatial predictions that support clinical decision-making. To establish reproducible benchmarks, we curated BreastDCEDL_AMBL by transforming The Cancer Imaging Archive's AMBL collection into a standardized deep learning dataset with 88 patients and 133 annotated lesions (89 benign, 44 malignant). This resource addresses a key infrastructure gap, as existing public datasets lack benign lesion annotations, limiting benign-malignant classification research. Training incorporated an expanded cohort of over 1,200 patients through integration with BreastDCEDL datasets, validating transfer learning approaches despite primary tumor-only annotations. Public release of the dataset, models, and evaluation protocols provides the first standardized benchmark for DCE-MRI lesion classification, enabling methodological advancement toward clinical deployment.

Craine, A., Simon, K., Severance, L., Alshawabkeh, L., Kim, N. H., Adler, E. D., Narezkina, A., Ben-Yehuda, O., Contijoch, F.

medrxiv logopreprintSep 30 2025
BackgroundRight ventricular (RV) function is a key factor in the diagnosis and prognosis of heart disease. However, current advanced CT-based assessments rely on semi-automated segmentation of the RV blood pool and manual delineation of the RV free and septal wall boundaries. Both of these steps are time-consuming and prone to inter- and intra-observer variability. MethodsWe developed and evaluated a fully automated pipeline consisting of two deep learning methods to automate volumetric and regional strain analysis of the RV from contrast-enhanced, ECG-gated cineCT images. The Right Heart Blood Segmenter (RHBS) is a 3D high resolution configuration of nnU-Net to define the endocardial boundary, while the Right Ventricular Wall Labeler (RVWL) is a 3D point cloud-based deep learning method to label the free and septal walls. We trained our models using a diverse cohort of patients with different RV phenotypes and tested in an independent cohort of patients with aortic stenosis undergoing TAVR. ResultsOur approach demonstrated high accuracy in both cross-validation and independent validation cohorts. RHBS and RVWL both yielded Dice scores of 0.96, and accurate volumetry metrics. RVWL achieved high Dice scores (>0.90) and high accuracy (>93%) for wall labeling. The combination of RHBS and RVWL provided accurate assessment of free and septal wall regional strain, with a median cosine similarity value of 0.97 in the independent cohort. ConclusionsA fully automated 3D cineCT-based RV regional strain analysis pipeline has the potential to significantly enhance the efficiency and reproducibility of RV function assessment, enabling the evaluation of large cohorts and multi-center studies. Key PointsO_LIRV endocardial segmentation of contrast enhanced CT scans can be utilized to perform volumetry, and when paired with labeling of free and septal walls, regional evaluation of surface strain. C_LIO_LIHowever, this has previously been performed using time-intensive semi-automated segmentation methods and manually labeling free wall and septal wall regions.. C_LIO_LIHere, we describe an automated, deep learning-based approach which uses two separate DL models to define the endocardial boundary (in 3D) and then label the free and septal walls on the endocardial surface. C_LIO_LIOur approach facilitates rapid and automatic advanced phenotyping of patients. This reduces prior limitations of potential interobserver variability and challenges associated with evaluating large cohorts. C_LI

Gao, S., Wang, S., Gao, Y., Wang, B., Zhuang, X., Warren, A., Stewart, G., Jones, J., Crispin-Ortuzar, M.

medrxiv logopreprintSep 30 2025
To evaluate the translational capabilities of foundation models, we develop a pathological concept learning approach focused on kidney cancer. By leveraging TNM staging guidelines and pathology reports, we build comprehensive pathological concepts for kidney cancer. Then, we extract deep features from whole slide images using foundation models, construct pathological graphs to capture spatial correlations, and trained graph neural networks to identify these concepts. Finally, we demonstrate the effectiveness of this approach in kidney cancer survival analysis, highlighting its explainability and fairness in identifying low- and high-risk patients. The source code has been released by https://github.com/shangqigao/RadioPath.

Titikhsha, A., Akhtar, M., Mollah, A. M.

medrxiv logopreprintSep 30 2025
Clinical machine learning (CML) in brain MRI analysis often assumes that "more data = better performance." However, when added samples derive from a different distribution than the training set, accuracy can decline--a phenomenon known as the Data Addition Dilemma. Here, we present the first systematic study of this dilemma in longitudinal traumatic brain injury (TBI) MRI, where acute baseline scans (session 1, S1) and follow-up scans (session 2, S2) exhibit pronounced distributional shifts. We make three key contributions. First, we quantify how intra-subject shifts (S1 [-&gt;] S2) and inter-subject variability jointly affect classifier performance in a 14-subject (28-scan) cohort spanning mild to severe TBI. Second, we compare four training schemes--(1) intra-session upper bound (S1 [-&gt;] S1), (2) cross-session OOD test (S1 [-&gt;] S2), (3) pooled training (S1+S2 [-&gt;] S1, S2), and (4) LOSO-IPA, which augments training with one unlabeled S2 scan per patient--using a lightweight logistic-regression model on five-component PCA features. Third, we derive actionable deployment insights: naive pooling can impair accuracy; pooled training trades baseline performance for robustness; and LOSO-IPA recovers near-intra-session accuracy. Accordingly, we recommend unlabeled per-subject follow-up anchoring and diagonal CORrelation ALignment (CORAL) covariance adjustment prior to inference. These findings clarify when additional data aid versus hinder CML in medical imaging and establish a minimally invasive framework for reliable longitudinal severity assessment in TBI.
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