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Radiomics across modalities: a comprehensive review of neurodegenerative diseases.

Inglese M, Conti A, Toschi N

pubmed logopapersJun 1 2025
Radiomics allows extraction from medical images of quantitative features that are able to reveal tissue patterns that are generally invisible to human observers. Despite the challenges in visually interpreting radiomic features and the computational resources required to generate them, they hold significant value in downstream automated processing. For instance, in statistical or machine learning frameworks, radiomic features enhance sensitivity and specificity, making them indispensable for tasks such as diagnosis, prognosis, prediction, monitoring, image-guided interventions, and evaluating therapeutic responses. This review explores the application of radiomics in neurodegenerative diseases, with a focus on Alzheimer's disease, Parkinson's disease, Huntington's disease, and multiple sclerosis. While radiomics literature often focuses on magnetic resonance imaging (MRI) and computed tomography (CT), this review also covers its broader application in nuclear medicine, with use cases of positron emission tomography (PET) and single-photon emission computed tomography (SPECT) radiomics. Additionally, we review integrated radiomics, where features from multiple imaging modalities are fused to improve model performance. This review also highlights the growing integration of radiomics with artificial intelligence and the need for feature standardisation and reproducibility to facilitate its translation into clinical practice.

Assessing the diagnostic accuracy and prognostic utility of artificial intelligence detection and grading of coronary artery calcification on nongated computed tomography (CT) thorax.

Shear B, Graby J, Murphy D, Strong K, Khavandi A, Burnett TA, Charters PFP, Rodrigues JCL

pubmed logopapersJun 1 2025
This study assessed the diagnostic accuracy and prognostic implications of an artificial intelligence (AI) tool for coronary artery calcification (CAC) assessment on nongated, noncontrast thoracic computed tomography (CT). A single-centre retrospective analysis of 75 consecutive patients per age group (<40, 40-49, 50-59, 60-69, 70-79, 80-89, and ≥90 years) undergoing non-gated, non-contrast CT (January-December 2015) was conducted. AI analysis reported CAC presence and generated an Agatston score, and the performance was compared with baseline CT reports and a dedicated radiologist re-review. Interobserver variability between AI and radiologist assessments was measured using Cohen's κ. All-cause mortality was recorded, and its association with AI-detected CAC was tested. A total of 291 patients (mean age: 64 ± 19, 51% female) were included, with 80% (234/291) of AI reports passing radiologist quality assessment. CAC was reported on 7% (17/234) of initial clinical reports, 58% (135/234) on radiologist re-review, and 57% (134/234) by AI analysis. After manual quality assurance (QA) assessment, the AI tool demonstrated high sensitivity (96%), specificity (96%), positive predictive value (95%), and negative predictive value (97%) for CAC detection compared with radiologist re-review. Interobserver agreement was strong for CAC prevalence (κ = 0.92) and moderate for severity grading (κ = 0.60). AI-detected CAC presence and severity predicted all-cause mortality (p < 0.001). The AI tool exhibited feasible analysis potential for non-contrast, non-gated thoracic CTs, offering prognostic insights if integrated into routine practice. Nonetheless, manual quality assessment remains essential. This AI tool represents a potential enhancement to CAC detection and reporting on routine noncardiac chest CT.

A rule-based method to automatically locate lumbar vertebral bodies on MRI images.

Xiberta P, Vila M, Ruiz M, Julià I Juanola A, Puig J, Vilanova JC, Boada I

pubmed logopapersJun 1 2025
Segmentation is a critical process in medical image interpretation. It is also essential for preparing training datasets for machine learning (ML)-based solutions. Despite technological advancements, achieving fully automatic segmentation is still challenging. User interaction is required to initiate the process, either by defining points or regions of interest, or by verifying and refining the output. One of the complex structures that requires semi-automatic segmentation procedures or manually defined training datasets is the lumbar spine. Automating the placement of a point within each lumbar vertebral body could significantly reduce user interaction in these procedures. A new method for automatically locating lumbar vertebral bodies in sagittal magnetic resonance images (MRI) is presented. The method integrates different image processing techniques and relies on the vertebral body morphology. Testing was mainly performed using 50 MRI scans that were previously annotated manually by placing a point at the centre of each lumbar vertebral body. A complementary public dataset was also used to assess robustness. Evaluation metrics included the correct labelling of each structure, the inclusion of each point within the corresponding vertebral body area, and the accuracy of the locations relative to the vertebral body centres using root mean squared error (RMSE) and mean absolute error (MAE). A one-sample Student's t-test was also performed to find the distance beyond which differences are considered significant (α = 0.05). All lumbar vertebral bodies from the primary dataset were correctly labelled, and the average RMSE and MAE between the automatic and manual locations were less than 5 mm. Distances to the vertebral body centres were found to be significantly less than 4.33 mm with a p-value < 0.05, and significantly less than half the average minimum diameter of a lumbar vertebral body with a p-value < 0.00001. Results from the complementary public dataset include high labelling and inclusion rates (85.1% and 94.3%, respectively), and similar accuracy values. The proposed method successfully achieves robust and accurate automatic placement of points within each lumbar vertebral body. The automation of this process enables the transition from semi-automatic to fully automatic methods, thus reducing error-prone and time-consuming user interaction, and facilitating the creation of training datasets for ML-based solutions.

A magnetic resonance imaging (MRI)-based deep learning radiomics model predicts recurrence-free survival in lung cancer patients after surgical resection of brain metastases.

Li B, Li H, Chen J, Xiao F, Fang X, Guo R, Liang M, Wu Z, Mao J, Shen J

pubmed logopapersJun 1 2025
To develop and validate a magnetic resonance imaging (MRI)-based deep learning radiomics model (DLRM) to predict recurrence-free survival (RFS) in lung cancer patients after surgical resection of brain metastases (BrMs). A total of 215 lung cancer patients with BrMs confirmed by surgical pathology were retrospectively included in five centres, 167 patients were assigned to the training cohort, and 48 to the external test cohort. All patients underwent regular follow-up brain MRIs. Clinical and morphological MRI models for predicting RFS were built using univariate and multivariate Cox regressions, respectively. Handcrafted and deep learning (DL) signatures were constructed from BrMs pretreatment MR images using the least absolute shrinkage and selection operator (LASSO) method, respectively. A DLRM was established by integrating the clinical and morphological MRI predictors, handcrafted and DL signatures based on the multivariate Cox regression coefficients. The Harrell C-index, area under the receiver operating characteristic curve (AUC), and Kaplan-Meier's survival analysis were used to evaluate model performance. The DLRM showed satisfactory performance in predicting RFS and 6- to 18-month intracranial recurrence in lung cancer patients after BrMs resection, achieving a C-index of 0.79 and AUCs of 0.84-0.90 in the training set and a C-index of 0.74 and AUCs of 0.71-0.85 in the external test set. The DLRM outperformed the clinical model, morphological MRI model, handcrafted signature, DL signature, and clinical-morphological MRI model in predicting RFS (P < 0.05). The DLRM successfully classified patients into high-risk and low-risk intracranial recurrence groups (P < 0.001). This MRI-based DLRM could predict RFS in lung cancer patients after surgical resection of BrMs.

Metabolic Dysfunction-Associated Steatotic Liver Disease Is Associated With Accelerated Brain Ageing: A Population-Based Study.

Wang J, Yang R, Miao Y, Zhang X, Paillard-Borg S, Fang Z, Xu W

pubmed logopapersJun 1 2025
Metabolic dysfunction-associated steatotic liver disease (MASLD) is linked to cognitive decline and dementia risk. We aimed to investigate the association between MASLD and brain ageing and explore the role of low-grade inflammation. Within the UK Biobank, 30 386 chronic neurological disorders-free participants who underwent brain magnetic resonance imaging (MRI) scans were included. Individuals were categorised into no MASLD/related SLD and MASLD/related SLD (including subtypes of MASLD, MASLD with increased alcohol intake [MetALD] and MASLD with other combined aetiology). Brain age was estimated using machine learning by 1079 brain MRI phenotypes. Brain age gap (BAG) was calculated as the difference between brain age and chronological age. Low-grade inflammation (INFLA) was calculated based on white blood cell count, platelet, neutrophil granulocyte to lymphocyte ratio and C-reactive protein. Data were analysed using linear regression and structural equation models. At baseline, 7360 (24.2%) participants had MASLD/related SLD. Compared to participants with no MASLD/related SLD, those with MASLD/related SLD had significantly larger BAG (β = 0.86, 95% CI = 0.70, 1.02), as well as those with MASLD (β = 0.59, 95% CI = 0.41, 0.77) or MetALD (β = 1.57, 95% CI = 1.31, 1.83). The association between MASLD/related SLD and larger BAG was significant across middle-aged (< 60) and older (≥ 60) adults, males and females, and APOE ɛ4 carriers and non-carriers. INFLA mediated 13.53% of the association between MASLD/related SLD and larger BAG (p < 0.001). MASLD/related SLD, as well as MASLD and MetALD, is associated with accelerated brain ageing, even among middle-aged adults and APOE ɛ4 non-carriers. Low-grade systemic inflammation may partially mediate this association.

Leveraging GPT-4 enables patient comprehension of radiology reports.

van Driel MHE, Blok N, van den Brand JAJG, van de Sande D, de Vries M, Eijlers B, Smits F, Visser JJ, Gommers D, Verhoef C, van Genderen ME, Grünhagen DJ, Hilling DE

pubmed logopapersJun 1 2025
To assess the feasibility of using GPT-4 to simplify radiology reports into B1-level Dutch for enhanced patient comprehension. This study utilised GPT-4, optimised through prompt engineering in Microsoft Azure. The researchers iteratively refined prompts to ensure accurate and comprehensive translations of radiology reports. Two radiologists assessed the simplified outputs for accuracy, completeness, and patient suitability. A third radiologist independently validated the final versions. Twelve colorectal cancer patients were recruited from two hospitals in the Netherlands. Semi-structured interviews were conducted to evaluate patients' comprehension and satisfaction with AI-generated reports. The optimised GPT-4 tool produced simplified reports with high accuracy (mean score 3.33/4). Patient comprehension improved significantly from 2.00 (original reports) to 3.28 (simplified reports) and 3.50 (summaries). Correct classification of report outcomes increased from 63.9% to 83.3%. Patient satisfaction was high (mean 8.30/10), with most preferring the long simplified report. RADiANT successfully enhances patient understanding and satisfaction through automated AI-driven report simplification, offering a scalable solution for patient-centred communication in clinical practice. This tool reduces clinician workload and supports informed patient decision-making, demonstrating the potential of LLMs beyond English-based healthcare contexts.

Quantifying the Unknowns of Plaque Morphology: The Role of Topological Uncertainty in Coronary Artery Disease.

Singh Y, Hathaway QA, Dinakar K, Shaw LJ, Erickson B, Lopez-Jimenez F, Bhatt DL

pubmed logopapersJun 1 2025
This article aimed to explore topological uncertainty in medical imaging, particularly in assessing coronary artery calcification using artificial intelligence (AI). Topological uncertainty refers to ambiguities in spatial and structural characteristics of medical features, which can impact the interpretation of coronary plaques. The article discusses the challenges of integrating AI with topological considerations and the need for specialized methodologies beyond traditional performance metrics. It highlights advancements in quantifying topological uncertainty, including the use of persistent homology and topological data analysis techniques. The importance of standardization in methodologies and ethical considerations in AI deployment are emphasized. It also outlines various types of uncertainty in topological frameworks for coronary plaques, categorizing them as quantifiable and controllable or quantifiable and not controllable. Future directions include developing AI algorithms that incorporate topological insights, establishing standardized protocols, and exploring ethical implications to revolutionize cardiovascular care through personalized treatment plans guided by sophisticated topological analysis. Recognizing and quantifying topological uncertainty in medical imaging as AI emerges is critical. Exploring topological uncertainty in coronary artery disease will revolutionize cardiovascular care, promising enhanced precision and personalization in diagnostics and treatment for millions affected by cardiovascular diseases.

Predictive models of severe disease in patients with COVID-19 pneumonia at an early stage on CT images using topological properties.

Iwasaki T, Arimura H, Inui S, Kodama T, Cui YH, Ninomiya K, Iwanaga H, Hayashi T, Abe O

pubmed logopapersJun 1 2025
Prediction of severe disease (SVD) in patients with coronavirus disease (COVID-19) pneumonia at an early stage could allow for more appropriate triage and improve patient prognosis. Moreover, the visualization of the topological properties of COVID-19 pneumonia could help clinical physicians describe the reasons for their decisions. We aimed to construct predictive models of SVD in patients with COVID-19 pneumonia at an early stage on computed tomography (CT) images using SVD-specific features that can be visualized on accumulated Betti number (BN) maps. BN maps (b0 and b1 maps) were generated by calculating the BNs within a shifting kernel in a manner similar to a convolution. Accumulated BN maps were constructed by summing BN maps (b0 and b1 maps) derived from a range of multiple-threshold values. Topological features were computed as intrinsic topological properties of COVID-19 pneumonia from the accumulated BN maps. Predictive models of SVD were constructed with two feature selection methods and three machine learning models using nested fivefold cross-validation. The proposed model achieved an area under the receiver-operating characteristic curve of 0.854 and a sensitivity of 0.908 in a test fold. These results suggested that topological image features could characterize COVID-19 pneumonia at an early stage as SVD.

Prediction of mammographic breast density based on clinical breast ultrasound images using deep learning: a retrospective analysis.

Bunnell A, Valdez D, Wolfgruber TK, Quon B, Hung K, Hernandez BY, Seto TB, Killeen J, Miyoshi M, Sadowski P, Shepherd JA

pubmed logopapersJun 1 2025
Breast density, as derived from mammographic images and defined by the Breast Imaging Reporting & Data System (BI-RADS), is one of the strongest risk factors for breast cancer. Breast ultrasound is an alternative breast cancer screening modality, particularly useful in low-resource, rural contexts. To date, breast ultrasound has not been used to inform risk models that need breast density. The purpose of this study is to explore the use of artificial intelligence (AI) to predict BI-RADS breast density category from clinical breast ultrasound imaging. We compared deep learning methods for predicting breast density directly from breast ultrasound imaging, as well as machine learning models from breast ultrasound image gray-level histograms alone. The use of AI-derived breast ultrasound breast density as a breast cancer risk factor was compared to clinical BI-RADS breast density. Retrospective (2009-2022) breast ultrasound data were split by individual into 70/20/10% groups for training, validation, and held-out testing for reporting results. 405,120 clinical breast ultrasound images from 14,066 women (mean age 53 years, range 18-99 years) with clinical breast ultrasound exams were retrospectively selected for inclusion from three institutions: 10,393 training (302,574 images), 2593 validation (69,842), and 1074 testing (28,616). The AI model achieves AUROC 0.854 in breast density classification and statistically significantly outperforms all image statistic-based methods. In an existing clinical 5-year breast cancer risk model, breast ultrasound AI and clinical breast density predict 5-year breast cancer risk with 0.606 and 0.599 AUROC (DeLong's test p-value: 0.67), respectively. BI-RADS breast density can be estimated from breast ultrasound imaging with high accuracy. The AI model provided superior estimates to other machine learning approaches. Furthermore, we demonstrate that age-adjusted, AI-derived breast ultrasound breast density provides similar predictive power to mammographic breast density in our population. Estimated breast density from ultrasound may be useful in performing breast cancer risk assessment in areas where mammography may not be available. National Cancer Institute.

WAND: Wavelet Analysis-Based Neural Decomposition of MRS Signals for Artifact Removal.

Merkofer JP, van de Sande DMJ, Amirrajab S, Min Nam K, van Sloun RJG, Bhogal AA

pubmed logopapersJun 1 2025
Accurate quantification of metabolites in magnetic resonance spectroscopy (MRS) is challenged by low signal-to-noise ratio (SNR), overlapping metabolites, and various artifacts. Particularly, unknown and unparameterized baseline effects obscure the quantification of low-concentration metabolites, limiting MRS reliability. This paper introduces wavelet analysis-based neural decomposition (WAND), a novel data-driven method designed to decompose MRS signals into their constituent components: metabolite-specific signals, baseline, and artifacts. WAND takes advantage of the enhanced separability of these components within the wavelet domain. The method employs a neural network, specifically a U-Net architecture, trained to predict masks for wavelet coefficients obtained through the continuous wavelet transform. These masks effectively isolate desired signal components in the wavelet domain, which are then inverse-transformed to obtain separated signals. Notably, an artifact mask is created by inverting the sum of all known signal masks, enabling WAND to capture and remove even unpredictable artifacts. The effectiveness of WAND in achieving accurate decomposition is demonstrated through numerical evaluations using simulated spectra. Furthermore, WAND's artifact removal capabilities significantly enhance the quantification accuracy of linear combination model fitting. The method's robustness is further validated using data from the 2016 MRS Fitting Challenge and in vivo experiments.
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