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Proportional Sensitivity in Generative Adversarial Network (GAN)-Augmented Brain Tumor Classification Using Convolutional Neural Network

Mahin Montasir Afif, Abdullah Al Noman, K. M. Tahsin Kabir, Md. Mortuza Ahmmed, Md. Mostafizur Rahman, Mufti Mahmud, Md. Ashraful Babu

arxiv logopreprintJun 20 2025
Generative Adversarial Networks (GAN) have shown potential in expanding limited medical imaging datasets. This study explores how different ratios of GAN-generated and real brain tumor MRI images impact the performance of a CNN in classifying healthy vs. tumorous scans. A DCGAN was used to create synthetic images which were mixed with real ones at various ratios to train a custom CNN. The CNN was then evaluated on a separate real-world test set. Our results indicate that the model maintains high sensitivity and precision in tumor classification, even when trained predominantly on synthetic data. When only a small portion of GAN data was added, such as 900 real images and 100 GAN images, the model achieved excellent performance, with test accuracy reaching 95.2%, and precision, recall, and F1-score all exceeding 95%. However, as the proportion of GAN images increased further, performance gradually declined. This study suggests that while GANs are useful for augmenting limited datasets especially when real data is scarce, too much synthetic data can introduce artifacts that affect the model's ability to generalize to real world cases.

TextBraTS: Text-Guided Volumetric Brain Tumor Segmentation with Innovative Dataset Development and Fusion Module Exploration

Xiaoyu Shi, Rahul Kumar Jain, Yinhao Li, Ruibo Hou, Jingliang Cheng, Jie Bai, Guohua Zhao, Lanfen Lin, Rui Xu, Yen-wei Chen

arxiv logopreprintJun 20 2025
Deep learning has demonstrated remarkable success in medical image segmentation and computer-aided diagnosis. In particular, numerous advanced methods have achieved state-of-the-art performance in brain tumor segmentation from MRI scans. While recent studies in other medical imaging domains have revealed that integrating textual reports with visual data can enhance segmentation accuracy, the field of brain tumor analysis lacks a comprehensive dataset that combines radiological images with corresponding textual annotations. This limitation has hindered the exploration of multimodal approaches that leverage both imaging and textual data. To bridge this critical gap, we introduce the TextBraTS dataset, the first publicly available volume-level multimodal dataset that contains paired MRI volumes and rich textual annotations, derived from the widely adopted BraTS2020 benchmark. Building upon this novel dataset, we propose a novel baseline framework and sequential cross-attention method for text-guided volumetric medical image segmentation. Through extensive experiments with various text-image fusion strategies and templated text formulations, our approach demonstrates significant improvements in brain tumor segmentation accuracy, offering valuable insights into effective multimodal integration techniques. Our dataset, implementation code, and pre-trained models are publicly available at https://github.com/Jupitern52/TextBraTS.

TextBraTS: Text-Guided Volumetric Brain Tumor Segmentation with Innovative Dataset Development and Fusion Module Exploration

Xiaoyu Shi, Rahul Kumar Jain, Yinhao Li, Ruibo Hou, Jingliang Cheng, Jie Bai, Guohua Zhao, Lanfen Lin, Rui Xu, Yen-wei Chen

arxiv logopreprintJun 20 2025
Deep learning has demonstrated remarkable success in medical image segmentation and computer-aided diagnosis. In particular, numerous advanced methods have achieved state-of-the-art performance in brain tumor segmentation from MRI scans. While recent studies in other medical imaging domains have revealed that integrating textual reports with visual data can enhance segmentation accuracy, the field of brain tumor analysis lacks a comprehensive dataset that combines radiological images with corresponding textual annotations. This limitation has hindered the exploration of multimodal approaches that leverage both imaging and textual data. To bridge this critical gap, we introduce the TextBraTS dataset, the first publicly available volume-level multimodal dataset that contains paired MRI volumes and rich textual annotations, derived from the widely adopted BraTS2020 benchmark. Building upon this novel dataset, we propose a novel baseline framework and sequential cross-attention method for text-guided volumetric medical image segmentation. Through extensive experiments with various text-image fusion strategies and templated text formulations, our approach demonstrates significant improvements in brain tumor segmentation accuracy, offering valuable insights into effective multimodal integration techniques. Our dataset, implementation code, and pre-trained models are publicly available at https://github.com/Jupitern52/TextBraTS.

DSA-NRP: No-Reflow Prediction from Angiographic Perfusion Dynamics in Stroke EVT

Shreeram Athreya, Carlos Olivares, Ameera Ismail, Kambiz Nael, William Speier, Corey Arnold

arxiv logopreprintJun 20 2025
Following successful large-vessel recanalization via endovascular thrombectomy (EVT) for acute ischemic stroke (AIS), some patients experience a complication known as no-reflow, defined by persistent microvascular hypoperfusion that undermines tissue recovery and worsens clinical outcomes. Although prompt identification is crucial, standard clinical practice relies on perfusion magnetic resonance imaging (MRI) within 24 hours post-procedure, delaying intervention. In this work, we introduce the first-ever machine learning (ML) framework to predict no-reflow immediately after EVT by leveraging previously unexplored intra-procedural digital subtraction angiography (DSA) sequences and clinical variables. Our retrospective analysis included AIS patients treated at UCLA Medical Center (2011-2024) who achieved favorable mTICI scores (2b-3) and underwent pre- and post-procedure MRI. No-reflow was defined as persistent hypoperfusion (Tmax > 6 s) on post-procedural imaging. From DSA sequences (AP and lateral views), we extracted statistical and temporal perfusion features from the target downstream territory to train ML classifiers for predicting no-reflow. Our novel method significantly outperformed a clinical-features baseline(AUC: 0.7703 $\pm$ 0.12 vs. 0.5728 $\pm$ 0.12; accuracy: 0.8125 $\pm$ 0.10 vs. 0.6331 $\pm$ 0.09), demonstrating that real-time DSA perfusion dynamics encode critical insights into microvascular integrity. This approach establishes a foundation for immediate, accurate no-reflow prediction, enabling clinicians to proactively manage high-risk patients without reliance on delayed imaging.

Research hotspots and development trends in molecular imaging of glioma (2014-2024): A bibliometric review.

Zhou H, Luo Y, Li S, Zhang G, Zeng X

pubmed logopapersJun 20 2025
This study aims to explore research hotspots and development trends in molecular imaging of glioma from 2014 to 2024. A total of 2957 publications indexed in the web of science core collection (WoSCC) were analyzed using bibliometric techniques. To visualize the research landscape, co-citation clustering, keyword analysis, and technological trend mapping were performed using CiteSpace and Excel. Publication output peaked in 2021. Emerging research trends included the integration of radiomics and artificial intelligence and the application of novel imaging modalities such as positron emission tomography and magnetic resonance spectroscopy. Significant progress was observed in blood-brain barrier disruption techniques and the development of molecular probes, especially those targeting IDH and MGMT mutations. Molecular imaging has been pivotal in advancing glioma research, contributing to improved diagnostic accuracy and personalized treatment strategies. However, challenges such as clinical translation and standardization remain. Future studies should focus on integrating advanced technologies into routine clinical practice to enhance patient care.

Segmentation of clinical imagery for improved epidural stimulation to address spinal cord injury

Matelsky, J. K., Sharma, P., Johnson, E. C., Wang, S., Boakye, M., Angeli, C., Forrest, G. F., Harkema, S. J., Tenore, F.

medrxiv logopreprintJun 20 2025
Spinal cord injury (SCI) can severely impair motor and autonomic function, with long-term consequences for quality of life. Epidural stimulation has emerged as a promising intervention, offering partial recovery by activating neural circuits below the injury. To make this therapy effective in practice, precise placement of stimulation electrodes is essential -- and that requires accurate segmentation of spinal cord structures in MRI data. We present a protocol for manual segmentation tailored to SCI anatomy, and evaluated a deep learning approach using a U-Net architecture to automate this segmentation process. Our approach yields accurate, efficient segmentation that identify potential electrode placement sites with high fidelity. Preliminary results suggest that this framework can accelerate SCI MRI analysis and improve planning for epidural stimulation, helping bridge the gap between advanced neurotechnologies and real-world clinical application with faster surgeries and more accurate electrode placement.

DSA-NRP: No-Reflow Prediction from Angiographic Perfusion Dynamics in Stroke EVT

Shreeram Athreya, Carlos Olivares, Ameera Ismail, Kambiz Nael, William Speier, Corey Arnold

arxiv logopreprintJun 20 2025
Following successful large-vessel recanalization via endovascular thrombectomy (EVT) for acute ischemic stroke (AIS), some patients experience a complication known as no-reflow, defined by persistent microvascular hypoperfusion that undermines tissue recovery and worsens clinical outcomes. Although prompt identification is crucial, standard clinical practice relies on perfusion magnetic resonance imaging (MRI) within 24 hours post-procedure, delaying intervention. In this work, we introduce the first-ever machine learning (ML) framework to predict no-reflow immediately after EVT by leveraging previously unexplored intra-procedural digital subtraction angiography (DSA) sequences and clinical variables. Our retrospective analysis included AIS patients treated at UCLA Medical Center (2011-2024) who achieved favorable mTICI scores (2b-3) and underwent pre- and post-procedure MRI. No-reflow was defined as persistent hypoperfusion (Tmax > 6 s) on post-procedural imaging. From DSA sequences (AP and lateral views), we extracted statistical and temporal perfusion features from the target downstream territory to train ML classifiers for predicting no-reflow. Our novel method significantly outperformed a clinical-features baseline(AUC: 0.7703 $\pm$ 0.12 vs. 0.5728 $\pm$ 0.12; accuracy: 0.8125 $\pm$ 0.10 vs. 0.6331 $\pm$ 0.09), demonstrating that real-time DSA perfusion dynamics encode critical insights into microvascular integrity. This approach establishes a foundation for immediate, accurate no-reflow prediction, enabling clinicians to proactively manage high-risk patients without reliance on delayed imaging.

Data extraction from free-text stroke CT reports using GPT-4o and Llama-3.3-70B: the impact of annotation guidelines.

Wihl J, Rosenkranz E, Schramm S, Berberich C, Griessmair M, Woźnicki P, Pinto F, Ziegelmayer S, Adams LC, Bressem KK, Kirschke JS, Zimmer C, Wiestler B, Hedderich D, Kim SH

pubmed logopapersJun 19 2025
To evaluate the impact of an annotation guideline on the performance of large language models (LLMs) in extracting data from stroke computed tomography (CT) reports. The performance of GPT-4o and Llama-3.3-70B in extracting ten imaging findings from stroke CT reports was assessed in two datasets from a single academic stroke center. Dataset A (n = 200) was a stratified cohort including various pathological findings, whereas dataset B (n = 100) was a consecutive cohort. Initially, an annotation guideline providing clear data extraction instructions was designed based on a review of cases with inter-annotator disagreements in dataset A. For each LLM, data extraction was performed under two conditions: with the annotation guideline included in the prompt and without it. GPT-4o consistently demonstrated superior performance over Llama-3.3-70B under identical conditions, with micro-averaged precision ranging from 0.83 to 0.95 for GPT-4o and from 0.65 to 0.86 for Llama-3.3-70B. Across both models and both datasets, incorporating the annotation guideline into the LLM input resulted in higher precision rates, while recall rates largely remained stable. In dataset B, the precision of GPT-4o and Llama-3-70B improved from 0.83 to 0.95 and from 0.87 to 0.94, respectively. Overall classification performance with and without the annotation guideline was significantly different in five out of six conditions. GPT-4o and Llama-3.3-70B show promising performance in extracting imaging findings from stroke CT reports, although GPT-4o steadily outperformed Llama-3.3-70B. We also provide evidence that well-defined annotation guidelines can enhance LLM data extraction accuracy. Annotation guidelines can improve the accuracy of LLMs in extracting findings from radiological reports, potentially optimizing data extraction for specific downstream applications. LLMs have utility in data extraction from radiology reports, but the role of annotation guidelines remains underexplored. Data extraction accuracy from stroke CT reports by GPT-4o and Llama-3.3-70B improved when well-defined annotation guidelines were incorporated into the model prompt. Well-defined annotation guidelines can improve the accuracy of LLMs in extracting imaging findings from radiological reports.

Machine learning-based MRI radiomics predict IL18 expression and overall survival of low-grade glioma patients.

Zhang Z, Xiao Y, Liu J, Xiao F, Zeng J, Zhu H, Tu W, Guo H

pubmed logopapersJun 19 2025
Interleukin-18 has broad immune regulatory functions. Genomic data and enhanced Magnetic Resonance Imaging data related to LGG patients were downloaded from The Cancer Genome Atlas and Cancer Imaging Archive, and the constructed model was externally validated using hospital MRI enhanced images and clinical pathological features. Radiomic feature extraction was performed using "PyRadiomics", feature selection was conducted using Maximum Relevance Minimum Redundancy and Recursive Feature Elimination methods, and a model was built using the Gradient Boosting Machine algorithm to predict the expression status of IL18. The constructed radiomics model achieved areas under the receiver operating characteristic curve of 0.861, 0.788, and 0.762 in the TCIA training dataset (n = 98), TCIA validation dataset (n = 41), and external validation dataset (n = 50). Calibration curves and decision curve analysis demonstrated the calibration and high clinical utility of the model. The radiomics model based on enhanced MRI can effectively predict the expression status of IL18 and the prognosis of LGG.

Optimization of Photon-Counting CT Myelography for the Detection of CSF-Venous Fistulas Using Convolutional Neural Network Denoising: A Comparative Analysis of Reconstruction Techniques.

Madhavan AA, Zhou Z, Farnsworth PJ, Thorne J, Amrhein TJ, Kranz PG, Brinjikji W, Cutsforth-Gregory JK, Kodet ML, Weber NM, Thompson G, Diehn FE, Yu L

pubmed logopapersJun 19 2025
Photon-counting detector CT myelography (PCD-CTM) is a recently described technique used for detecting spinal CSF leaks, including CSF-venous fistulas. Various image reconstruction techniques, including smoother-versus-sharper kernels and virtual monoenergetic images, are available with photon-counting CT. Moreover, denoising algorithms have shown promise in improving sharp kernel images. No prior studies have compared image quality of these different reconstructions on photon-counting CT myelography. Here, we sought to compare several image reconstructions using various parameters important for the detection of CSF-venous fistulas. We performed a retrospective review of all consecutive decubitus PCD-CTM between February 1, 2022, and August 1, 2024, at 1 institution. We included patients whose studies had the following reconstructions: Br48-40 keV virtual monoenergetic reconstruction, Br56 low-energy threshold (T3D), Qr89-T3D denoised with quantum iterative reconstruction, and Qr89-T3D denoised with a convolutional neural network algorithm. We excluded patients who had extradural CSF on preprocedural imaging or a technically unsatisfactory myelogram-. All 4 reconstructions were independently reviewed by 2 neuroradiologists. Each reviewer rated spatial resolution, noise, the presence of artifacts, image quality, and diagnostic confidence (whether positive or negative) on a 1-5 scale. These metrics were compared using the Friedman test. Additionally, noise and contrast were quantitatively assessed by a third reviewer and compared. The Qr89 reconstructions demonstrated higher spatial resolution than their Br56 or Br48-40keV counterparts. Qr89 with convolutional neural network denoising had less noise, better image quality, and improved diagnostic confidence compared with Qr89 with quantum iterative reconstruction denoising. The Br48-40keV reconstruction had the highest contrast-to-noise ratio quantitatively. In our study, the sharpest quantitative kernel (Qr89-T3D) with convolutional neural network denoising demonstrated the best performance regarding spatial resolution, noise level, image quality, and diagnostic confidence for detecting or excluding the presence of a CSF-venous fistula.
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