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Automated Microbubble Discrimination in Ultrasound Localization Microscopy by Vision Transformer.

Wang R, Lee WN

pubmed logopapersMay 15 2025
Ultrasound localization microscopy (ULM) has revolutionized microvascular imaging by breaking the acoustic diffraction limit. However, different ULM workflows depend heavily on distinct prior knowledge, such as the impulse response and empirical selection of parameters (e.g., the number of microbubbles (MBs) per frame M), or the consistency of training-test dataset in deep learning (DL)-based studies. We hereby propose a general ULM pipeline that reduces priors. Our approach leverages a DL model that simultaneously distills microbubble signals and reduces speckle from every frame without estimating the impulse response and M. Our method features an efficient channel attention vision transformer (ViT) and a progressive learning strategy, enabling it to learn global information through training on progressively increasing patch sizes. Ample synthetic data were generated using the k-Wave toolbox to simulate various MB patterns, thus overcoming the deficiency of labeled data. The ViT output was further processed by a standard radial symmetry method for sub-pixel localization. Our method performed well on model-unseen public datasets: one in silico dataset with ground truth and four in vivo datasets of mouse tumor, rat brain, rat brain bolus, and rat kidney. Our pipeline outperformed conventional ULM, achieving higher positive predictive values (precision in DL, 0.88-0.41 vs. 0.83-0.16) and improved accuracy (root-mean-square errors: 0.25-0.14 λ vs. 0.31-0.13 λ) across a range of signal-to-noise ratios from 60 dB to 10 dB. Our model could detect more vessels in diverse in vivo datasets while achieving comparable resolutions to the standard method. The proposed ViT-based model, seamlessly integrated with state-of-the-art downstream ULM steps, improved the overall ULM performance with no priors.

[Orthodontics in the CBCT era: 25 years later, what are the guidelines?].

Foucart JM, Papelard N, Bourriau J

pubmed logopapersMay 15 2025
CBCT has become an essential tool in orthodontics, although its use must remain judicious and evidence-based. This study provides an updated analysis of international recommendations concerning the use of CBCT in orthodontics, with a particular focus on clinical indications, radiation dose reduction, and recent technological advancements. A systematic review of guidelines published between 2015 and 2025 was conducted following the PRISMA methodology. Inclusion criteria comprised official directives from recognized scientific societies and clinical studies evaluating low dose protocols in orthodontics. The analysis of the 19 retained recommendations reveals a consensus regarding the primary indications for CBCT in orthodontics, particularly for impacted teeth, skeletal anomalies, periodontal and upper airways assessment. Dose optimization and the integration of artificial intelligence emerge as major advancements, enabling significant radiation reduction while preserving diagnostic accuracy. The development of low dose protocols and advanced reconstruction algorithms presents promising perspectives for safer and more efficient imaging, increasingly replacing conventional 2D radiographic techniques. However, an international harmonization of recommendations for these new imaging sequences is imperative to standardize clinical practices and enhance patient radioprotection.

Scientific Evidence for Clinical Text Summarization Using Large Language Models: Scoping Review.

Bednarczyk L, Reichenpfader D, Gaudet-Blavignac C, Ette AK, Zaghir J, Zheng Y, Bensahla A, Bjelogrlic M, Lovis C

pubmed logopapersMay 15 2025
Information overload in electronic health records requires effective solutions to alleviate clinicians' administrative tasks. Automatically summarizing clinical text has gained significant attention with the rise of large language models. While individual studies show optimism, a structured overview of the research landscape is lacking. This study aims to present the current state of the art on clinical text summarization using large language models, evaluate the level of evidence in existing research and assess the applicability of performance findings in clinical settings. This scoping review complied with the PRISMA-ScR (Preferred Reporting Items for Systematic Reviews and Meta-Analyses extension for Scoping Reviews) guidelines. Literature published between January 1, 2019, and June 18, 2024, was identified from 5 databases: PubMed, Embase, Web of Science, IEEE Xplore, and ACM Digital Library. Studies were excluded if they did not describe transformer-based models, did not focus on clinical text summarization, did not engage with free-text data, were not original research, were nonretrievable, were not peer-reviewed, or were not in English, French, Spanish, or German. Data related to study context and characteristics, scope of research, and evaluation methodologies were systematically collected and analyzed by 3 authors independently. A total of 30 original studies were included in the analysis. All used observational retrospective designs, mainly using real patient data (n=28, 93%). The research landscape demonstrated a narrow research focus, often centered on summarizing radiology reports (n=17, 57%), primarily involving data from the intensive care unit (n=15, 50%) of US-based institutions (n=19, 73%), in English (n=26, 87%). This focus aligned with the frequent reliance on the open-source Medical Information Mart for Intensive Care dataset (n=15, 50%). Summarization methodologies predominantly involved abstractive approaches (n=17, 57%) on single-document inputs (n=4, 13%) with unstructured data (n=13, 43%), yet reporting on methodological details remained inconsistent across studies. Model selection involved both open-source models (n=26, 87%) and proprietary models (n=7, 23%). Evaluation frameworks were highly heterogeneous. All studies conducted internal validation, but external validation (n=2, 7%), failure analysis (n=6, 20%), and patient safety risks analysis (n=1, 3%) were infrequent, and none reported bias assessment. Most studies used both automated metrics and human evaluation (n=16, 53%), while 10 (33%) used only automated metrics, and 4 (13%) only human evaluation. Key barriers hinder the translation of current research into trustworthy, clinically valid applications. Current research remains exploratory and limited in scope, with many applications yet to be explored. Performance assessments often lack reliability, and clinical impact evaluations are insufficient raising concerns about model utility, safety, fairness, and data privacy. Advancing the field requires more robust evaluation frameworks, a broader research scope, and a stronger focus on real-world applicability.

Deep learning MRI-based radiomic models for predicting recurrence in locally advanced nasopharyngeal carcinoma after neoadjuvant chemoradiotherapy: a multi-center study.

Hu C, Xu C, Chen J, Huang Y, Meng Q, Lin Z, Huang X, Chen L

pubmed logopapersMay 15 2025
Local recurrence and distant metastasis were a common manifestation of locoregionally advanced nasopharyngeal carcinoma (LA-NPC) after neoadjuvant chemoradiotherapy (NACT). To validate the clinical value of MRI radiomic models based on deep learning for predicting the recurrence of LA-NPC patients. A total of 328 NPC patients from four hospitals were retrospectively included and divided into the training(n = 229) and validation (n = 99) cohorts randomly. Extracting 975 traditional radiomic features and 1000 deep radiomic features from contrast enhanced T1-weighted (T1WI + C) and T2-weighted (T2WI) sequences, respectively. Least absolute shrinkage and selection operator (LASSO) was applied for feature selection. Five machine learning classifiers were conducted to develop three models for LA-NPC prediction in training cohort, namely Model I: traditional radiomic features, Model II: combined the deep radiomic features with Model I, and Model III: combined Model II with clinical features. The predictive performance of these models were evaluated by receive operating characteristic (ROC) curve analysis, area under the curve (AUC), accuracy, sensitivity and specificity in both cohorts. The clinical characteristics in two cohorts showed no significant differences. Choosing 15 radiomic features and 6 deep radiomic features from T1WI + C. Choosing 9 radiomic features and 6 deep radiomic features from T2WI. In T2WI, the Model II based on Random forest (RF) (AUC = 0.87) performed best compared with other models in validation cohort. Traditional radiomic model combined with deep radiomic features shows excellent predictive performance. It could be used assist clinical doctors to predict curative effect for LA-NPC patients after NACT.

An Annotated Multi-Site and Multi-Contrast Magnetic Resonance Imaging Dataset for the study of the Human Tongue Musculature.

Ribeiro FL, Zhu X, Ye X, Tu S, Ngo ST, Henderson RD, Steyn FJ, Kiernan MC, Barth M, Bollmann S, Shaw TB

pubmed logopapersMay 14 2025
This dataset provides the first annotated, openly available MRI-based imaging dataset for investigations of tongue musculature, including multi-contrast and multi-site MRI data from non-disease participants. The present dataset includes 47 participants collated from three studies: BeLong (four participants; T2-weighted images), EATT4MND (19 participants; T2-weighted images), and BMC (24 participants; T1-weighted images). We provide manually corrected segmentations of five key tongue muscles: the superior longitudinal, combined transverse/vertical, genioglossus, and inferior longitudinal muscles. Other phenotypic measures, including age, sex, weight, height, and tongue muscle volume, are also available for use. This dataset will benefit researchers across domains interested in the structure and function of the tongue in health and disease. For instance, researchers can use this data to train new machine learning models for tongue segmentation, which can be leveraged for segmentation and tracking of different tongue muscles engaged in speech formation in health and disease. Altogether, this dataset provides the means to the scientific community for investigation of the intricate tongue musculature and its role in physiological processes and speech production.

Development of a deep learning method for phase retrieval image enhancement in phase contrast microcomputed tomography.

Ding XF, Duan X, Li N, Khoz Z, Wu FX, Chen X, Zhu N

pubmed logopapersMay 13 2025
Propagation-based imaging (one method of X-ray phase contrast imaging) with microcomputed tomography (PBI-µCT) offers the potential to visualise low-density materials, such as soft tissues and hydrogel constructs, which are difficult to be identified by conventional absorption-based contrast µCT. Conventional µCT reconstruction produces edge-enhanced contrast (EEC) images which preserve sharp boundaries but are susceptible to noise and do not provide consistent grey value representation for the same material. Meanwhile, phase retrieval (PR) algorithms can convert edge enhanced contrast to area contrast to improve signal-to-noise ratio (SNR), and contrast-to-noise ratio (CNR) but usually results to over-smoothing, thus creating inaccuracies in quantitative analysis. To alleviate these problems, this study developed a deep learning-based method called edge view enhanced phase retrieval (EVEPR), by strategically integrating the complementary spatial features of denoised EEC and PR images, and further applied this method to segment the hydrogel constructs in vivo and ex vivo. EVEPR used paired denoised EEC and PR images to train a deep convolutional neural network (CNN) on a dataset-to-dataset basis. The CNN had been trained on important high-frequency details, for example, edges and boundaries from the EEC image and area contrast from PR images. The CNN predicted result showed enhanced area contrast beyond conventional PR algorithms while improving SNR and CNR. The enhanced CNR especially allowed for the image to be segmented with greater efficiency. EVEPR was applied to in vitro and ex vivo PBI-µCT images of low-density hydrogel constructs. The enhanced visibility and consistency of hydrogel constructs was essential for segmenting such material which usually exhibit extremely poor contrast. The EVEPR images allowed for more accurate segmentation with reduced manual adjustments. The efficiency in segmentation allowed for the generation of a sizeable database of segmented hydrogel scaffolds which were used in conventional data-driven segmentation applications. EVEPR was demonstrated to be a robust post-image processing method capable of significantly enhancing image quality by training a CNN on paired denoised EEC and PR images. This method not only addressed the common issues of over-smoothing and noise susceptibility in conventional PBI-µCT image processing but also allowed for efficient and accurate in vitro and ex vivo image processing applications of low-density materials.

Unsupervised Out-of-Distribution Detection in Medical Imaging Using Multi-Exit Class Activation Maps and Feature Masking

Yu-Jen Chen, Xueyang Li, Yiyu Shi, Tsung-Yi Ho

arxiv logopreprintMay 13 2025
Out-of-distribution (OOD) detection is essential for ensuring the reliability of deep learning models in medical imaging applications. This work is motivated by the observation that class activation maps (CAMs) for in-distribution (ID) data typically emphasize regions that are highly relevant to the model's predictions, whereas OOD data often lacks such focused activations. By masking input images with inverted CAMs, the feature representations of ID data undergo more substantial changes compared to those of OOD data, offering a robust criterion for differentiation. In this paper, we introduce a novel unsupervised OOD detection framework, Multi-Exit Class Activation Map (MECAM), which leverages multi-exit CAMs and feature masking. By utilizing mult-exit networks that combine CAMs from varying resolutions and depths, our method captures both global and local feature representations, thereby enhancing the robustness of OOD detection. We evaluate MECAM on multiple ID datasets, including ISIC19 and PathMNIST, and test its performance against three medical OOD datasets, RSNA Pneumonia, COVID-19, and HeadCT, and one natural image OOD dataset, iSUN. Comprehensive comparisons with state-of-the-art OOD detection methods validate the effectiveness of our approach. Our findings emphasize the potential of multi-exit networks and feature masking for advancing unsupervised OOD detection in medical imaging, paving the way for more reliable and interpretable models in clinical practice.

An incremental algorithm for non-convex AI-enhanced medical image processing

Elena Morotti

arxiv logopreprintMay 13 2025
Solving non-convex regularized inverse problems is challenging due to their complex optimization landscapes and multiple local minima. However, these models remain widely studied as they often yield high-quality, task-oriented solutions, particularly in medical imaging, where the goal is to enhance clinically relevant features rather than merely minimizing global error. We propose incDG, a hybrid framework that integrates deep learning with incremental model-based optimization to efficiently approximate the $\ell_0$-optimal solution of imaging inverse problems. Built on the Deep Guess strategy, incDG exploits a deep neural network to generate effective initializations for a non-convex variational solver, which refines the reconstruction through regularized incremental iterations. This design combines the efficiency of Artificial Intelligence (AI) tools with the theoretical guarantees of model-based optimization, ensuring robustness and stability. We validate incDG on TpV-regularized optimization tasks, demonstrating its effectiveness in medical image deblurring and tomographic reconstruction across diverse datasets, including synthetic images, brain CT slices, and chest-abdomen scans. Results show that incDG outperforms both conventional iterative solvers and deep learning-based methods, achieving superior accuracy and stability. Moreover, we confirm that training incDG without ground truth does not significantly degrade performance, making it a practical and powerful tool for solving non-convex inverse problems in imaging and beyond.

DEMAC-Net: A Dual-Encoder Multiattention Collaborative Network for Cervical Nerve Pathway and Adjacent Anatomical Structure Segmentation.

Cui H, Duan J, Lin L, Wu Q, Guo W, Zang Q, Zhou M, Fang W, Hu Y, Zou Z

pubmed logopapersMay 13 2025
Currently, cervical anesthesia is performed using three main approaches: superficial cervical plexus block, deep cervical plexus block, and intermediate plexus nerve block. However, each technique carries inherent risks and demands significant clinical expertise. Ultrasound imaging, known for its real-time visualization capabilities and accessibility, is widely used in both diagnostic and interventional procedures. Nevertheless, accurate segmentation of small and irregularly shaped structures such as the cervical and brachial plexuses remains challenging due to image noise, complex anatomical morphology, and limited annotated training data. This study introduces DEMAC-Net-a dual-encoder, multiattention collaborative network-to significantly improve the segmentation accuracy of these neural structures. By precisely identifying the cervical nerve pathway (CNP) and adjacent anatomical tissues, DEMAC-Net aims to assist clinicians, especially those less experienced, in effectively guiding anesthesia procedures and accurately identifying optimal needle insertion points. Consequently, this improvement is expected to enhance clinical safety, reduce procedural risks, and streamline decision-making efficiency during ultrasound-guided regional anesthesia. DEMAC-Net combines a dual-encoder architecture with the Spatial Understanding Convolution Kernel (SUCK) and the Spatial-Channel Attention Module (SCAM) to extract multi-scale features effectively. Additionally, a Global Attention Gate (GAG) and inter-layer fusion modules refine relevant features while suppressing noise. A novel dataset, Neck Ultrasound Dataset (NUSD), was introduced, containing 1,500 annotated ultrasound images across seven anatomical regions. Extensive experiments were conducted on both NUSD and the BUSI public dataset, comparing DEMAC-Net to state-of-the-art models using metrics such as Dice Similarity Coefficient (DSC) and Intersection over Union (IoU). On the NUSD dataset, DEMAC-Net achieved a mean DSC of 93.3%, outperforming existing models. For external validation on the BUSI dataset, it demonstrated superior generalization, achieving a DSC of 87.2% and a mean IoU of 77.4%, surpassing other advanced methods. Notably, DEMAC-Net displayed consistent segmentation stability across all tested structures. The proposed DEMAC-Net significantly improves segmentation accuracy for small nerves and complex anatomical structures in ultrasound images, outperforming existing methods in terms of accuracy and computational efficiency. This framework holds great potential for enhancing ultrasound-guided procedures, such as peripheral nerve blocks, by providing more precise anatomical localization, ultimately improving clinical outcomes.

Evaluating the reference accuracy of large language models in radiology: a comparative study across subspecialties.

Güneş YC, Cesur T, Çamur E

pubmed logopapersMay 12 2025
This study aimed to compare six large language models (LLMs) [Chat Generative Pre-trained Transformer (ChatGPT)o1-preview, ChatGPT-4o, ChatGPT-4o with canvas, Google Gemini 1.5 Pro, Claude 3.5 Sonnet, and Claude 3 Opus] in generating radiology references, assessing accuracy, fabrication, and bibliographic completeness. In this cross-sectional observational study, 120 open-ended questions were administered across eight radiology subspecialties (neuroradiology, abdominal, musculoskeletal, thoracic, pediatric, cardiac, head and neck, and interventional radiology), with 15 questions per subspecialty. Each question prompted the LLMs to provide responses containing four references with in-text citations and complete bibliographic details (authors, title, journal, publication year/month, volume, issue, page numbers, and PubMed Identifier). References were verified using Medline, Google Scholar, the Directory of Open Access Journals, and web searches. Each bibliographic element was scored for correctness, and a composite final score [(FS): 0-36] was calculated by summing the correct elements and multiplying this by a 5-point verification score for content relevance. The FS values were then categorized into a 5-point Likert scale reference accuracy score (RAS: 0 = fabricated; 4 = fully accurate). Non-parametric tests (Kruskal-Wallis, Tamhane's T2, Wilcoxon signed-rank test with Bonferroni correction) were used for statistical comparisons. Claude 3.5 Sonnet demonstrated the highest reference accuracy, with 80.8% fully accurate references (RAS 4) and a fabrication rate of 3.1%, significantly outperforming all other models (<i>P</i> < 0.001). Claude 3 Opus ranked second, achieving 59.6% fully accurate references and a fabrication rate of 18.3% (<i>P</i> < 0.001). ChatGPT-based models (ChatGPT-4o, ChatGPT-4o with canvas, and ChatGPT o1-preview) exhibited moderate accuracy, with fabrication rates ranging from 27.7% to 52.9% and <8% fully accurate references. Google Gemini 1.5 Pro had the lowest performance, achieving only 2.7% fully accurate references and the highest fabrication rate of 60.6% (<i>P</i> < 0.001). Reference accuracy also varied by subspecialty, with neuroradiology and cardiac radiology outperforming pediatric and head and neck radiology. Claude 3.5 Sonnet significantly outperformed all other models in generating verifiable radiology references, and Claude 3 Opus showed moderate performance. In contrast, ChatGPT models and Google Gemini 1.5 Pro delivered substantially lower accuracy with higher rates of fabricated references, highlighting current limitations in automated academic citation generation. The high accuracy of Claude 3.5 Sonnet can improve radiology literature reviews, research, and education with dependable references. The poor performance of other models, with high fabrication rates, risks misinformation in clinical and academic settings and highlights the need for refinement to ensure safe and effective use.
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