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Explainable multimodal deep learning for predicting thyroid cancer lateral lymph node metastasis using ultrasound imaging.

Shen P, Yang Z, Sun J, Wang Y, Qiu C, Wang Y, Ren Y, Liu S, Cai W, Lu H, Yao S

pubmed logopapersAug 1 2025
Preoperative prediction of lateral lymph node metastasis is clinically crucial for guiding surgical strategy and prognosis assessment, yet precise prediction methods are lacking. We therefore develop Lateral Lymph Node Metastasis Network (LLNM-Net), a bidirectional-attention deep-learning model that fuses multimodal data (preoperative ultrasound images, radiology reports, pathological findings, and demographics) from 29,615 patients and 9836 surgical cases across seven centers. Integrating nodule morphology and position with clinical text, LLNM-Net achieves an Area Under the Curve (AUC) of 0.944 and 84.7% accuracy in multicenter testing, outperforming human experts (64.3% accuracy) and surpassing previous models by 7.4%. Here we show tumors within 0.25 cm of the thyroid capsule carry >72% metastasis risk, with middle and upper lobes as high-risk regions. Leveraging location, shape, echogenicity, margins, demographics, and clinician inputs, LLNM-Net further attains an AUC of 0.983 for identifying high-risk patients. The model is thus a promising for tool for preoperative screening and risk stratification.

Transparent brain tumor detection using DenseNet169 and LIME.

Abraham LA, Palanisamy G, Veerapu G

pubmed logopapersAug 1 2025
A crucial area of research in the field of medical imaging is that of brain tumor classification, which greatly aids diagnosis and facilitates treatment planning. This paper proposes DenseNet169-LIME-TumorNet, a model based on deep learning and an integrated combination of DenseNet169 with LIME to boost the performance of brain tumor classification and its interpretability. The model was trained and evaluated on the publicly available Brain Tumor MRI Dataset containing 2,870 images spanning three tumor types. Dense169-LIME-TumorNet achieves a classification accuracy of 98.78%, outperforming widely used architectures including Inception V3, ResNet50, MobileNet V2, EfficientNet variants, and other DenseNet configurations. The integration of LIME provides visual explanations that enhance transparency and reliability in clinical decision-making. Furthermore, the model demonstrates minimal computational overhead, enabling faster inference and deployment in resource-constrained clinical environments, thereby highlighting its practical utility for real-time diagnostic support. Work in the future should run towards creating generalization through the adoption of a multi-modal learning approach, hybrid deep learning development, and real-time application development for AI-assisted diagnosis.

Development and Validation of a Brain Aging Biomarker in Middle-Aged and Older Adults: Deep Learning Approach.

Li Z, Li J, Li J, Wang M, Xu A, Huang Y, Yu Q, Zhang L, Li Y, Li Z, Wu X, Bu J, Li W

pubmed logopapersAug 1 2025
Precise assessment of brain aging is crucial for early detection of neurodegenerative disorders and aiding clinical practice. Existing magnetic resonance imaging (MRI)-based methods excel in this task, but they still have room for improvement in capturing local morphological variations across brain regions and preserving the inherent neurobiological topological structures. To develop and validate a deep learning framework incorporating both connectivity and complexity for accurate brain aging estimation, facilitating early identification of neurodegenerative diseases. We used 5889 T1-weighted MRI scans from the Alzheimer's Disease Neuroimaging Initiative dataset. We proposed a novel brain vision graph neural network (BVGN), incorporating neurobiologically informed feature extraction modules and global association mechanisms to provide a sensitive deep learning-based imaging biomarker. Model performance was evaluated using mean absolute error (MAE) against benchmark models, while generalization capability was further validated on an external UK Biobank dataset. We calculated the brain age gap across distinct cognitive states and conducted multiple logistic regressions to compare its discriminative capacity against conventional cognitive-related variables in distinguishing cognitively normal (CN) and mild cognitive impairment (MCI) states. Longitudinal track, Cox regression, and Kaplan-Meier plots were used to investigate the longitudinal performance of the brain age gap. The BVGN model achieved an MAE of 2.39 years, surpassing current state-of-the-art approaches while obtaining an interpretable saliency map and graph theory supported by medical evidence. Furthermore, its performance was validated on the UK Biobank cohort (N=34,352) with an MAE of 2.49 years. The brain age gap derived from BVGN exhibited significant difference across cognitive states (CN vs MCI vs Alzheimer disease; P<.001), and demonstrated the highest discriminative capacity between CN and MCI than general cognitive assessments, brain volume features, and apolipoprotein E4 carriage (area under the receiver operating characteristic curve [AUC] of 0.885 vs AUC ranging from 0.646 to 0.815). Brain age gap exhibited clinical feasibility combined with Functional Activities Questionnaire, with improved discriminative capacity in models achieving lower MAEs (AUC of 0.945 vs 0.923 and 0.911; AUC of 0.935 vs 0.900 and 0.881). An increasing brain age gap identified by BVGN may indicate underlying pathological changes in the CN to MCI progression, with each unit increase linked to a 55% (hazard ratio=1.55, 95% CI 1.13-2.13; P=.006) higher risk of cognitive decline in individuals who are CN and a 29% (hazard ratio=1.29, 95% CI 1.09-1.51; P=.002) increase in individuals with MCI. BVGN offers a precise framework for brain aging assessment, demonstrates strong generalization on an external large-scale dataset, and proposes novel interpretability strategies to elucidate multiregional cooperative aging patterns. The brain age gap derived from BVGN is validated as a sensitive biomarker for early identification of MCI and predicting cognitive decline, offering substantial potential for clinical applications.

Contrast-Enhanced Ultrasound-Based Intratumoral and Peritumoral Radiomics for Discriminating Carcinoma In Situ and Invasive Carcinoma of the Breast.

Zheng Y, Song Y, Wu T, Chen J, Du Y, Liu H, Wu R, Kuang Y, Diao X

pubmed logopapersAug 1 2025
This study aimed to evaluate the efficacy of a diagnostic model integrating intratumoral and peritumoral radiomic features based on contrast-enhanced ultrasound (CEUS) for differentiation between carcinoma in situ (CIS) and invasive breast carcinoma (IBC). Consecutive cases confirmed by postoperative histopathological analysis were retrospectively gathered, comprising 143 cases of CIS from January 2018 to May 2024, and 186 cases of IBC from May 2022 to May 2024, totaling 322 patients with 329 lesion and complete preoperative CEUS imaging. Intratumoral regions of interest (ROI) were defined in CEUS peak-phase images deferring gray-scale mode, while peritumoral ROI were defined by expanding 2 mm, 5 mm, and 8 mm beyond the tumor margin for radiomic features extraction. Statistical and machine learning techniques were employed for feature selection. Logistic regression classifier was utilized to construct radiomic models integrating intratumoral, peritumoral, and clinical features. Model performance was assessed using the area under the curve (AUC). The model incorporating 5 mm peritumoral features with intratumoral and clinical data exhibited superior diagnostic performance, achieving AUCs of 0.927 and 0.911 in the training and test sets, respectively. It outperformed models based only on clinical features or other radiomic configurations, with the 5 mm peritumoral region proving most effective for lesions discrimination. This study highlights the significant potential of combined intratumoral and peritumoral CEUS radiomics for classifying CIS and IBC, with the integration of 5 mm peritumoral features notably enhancing diagnostic accuracy.

Segmentation of coronary calcifications with a domain knowledge-based lightweight 3D convolutional neural network.

Santos R, Castro R, Baeza R, Nunes F, Filipe VM, Renna F, Paredes H, Fontes-Carvalho R, Pedrosa J

pubmed logopapersAug 1 2025
Cardiovascular diseases are the leading cause of death in the world, with coronary artery disease being the most prevalent. Coronary artery calcifications are critical biomarkers for cardiovascular disease, and their quantification via non-contrast computed tomography is a widely accepted and heavily employed technique for risk assessment. Manual segmentation of these calcifications is a time-consuming task, subject to variability. State-of-the-art methods often employ convolutional neural networks for an automated approach. However, there is a lack of studies that perform these segmentations with 3D architectures that can gather important and necessary anatomical context to distinguish the different coronary arteries. This paper proposes a novel and automated approach that uses a lightweight three-dimensional convolutional neural network to perform efficient and accurate segmentations and calcium scoring. Results show that this method achieves Dice score coefficients of 0.93 ± 0.02, 0.93 ± 0.03, 0.84 ± 0.02, 0.63 ± 0.06 and 0.89 ± 0.03 for the foreground, left anterior descending artery (LAD), left circumflex artery (LCX), left main artery (LM) and right coronary artery (RCA) calcifications, respectively, outperforming other state-of-the-art architectures. An external cohort validation also showed the generalization of this method's performance and how it can be applied in different clinical scenarios. In conclusion, the proposed lightweight 3D convolutional neural network demonstrates high efficiency and accuracy, outperforming state-of-the-art methods and showcasing robust generalization potential.

A RF-based end-to-end Breast Cancer Prediction algorithm.

Win KN

pubmed logopapersAug 1 2025
Breast cancer became the primary cause of cancer-related deaths among women year by year. Early detection and accurate prediction of breast cancer play a crucial role in strengthening the quality of human life. Many scientists have concentrated on analyzing and conducting the development of many algorithms and progressing computer-aided diagnosis applications. Whereas many research have been conducted, feature research on cancer diagnosis is rare, especially regarding predicting the desired features by providing and feeding breast cancer features into the system. In this regard, this paper proposed a Breast Cancer Prediction (RF-BCP) algorithm based on Random Forest by taking inputs to predict cancer. For the experiment of the proposed algorithm, two datasets were utilized namely Breast Cancer dataset and a curated mammography dataset, and also compared the accuracy of the proposed algorithm with SVM, Gaussian NB, and KNN algorithms. Experimental results show that the proposed algorithm can predict well and outperform other existing machine learning algorithms to support decision-making.

Your other Left! Vision-Language Models Fail to Identify Relative Positions in Medical Images

Daniel Wolf, Heiko Hillenhagen, Billurvan Taskin, Alex Bäuerle, Meinrad Beer, Michael Götz, Timo Ropinski

arxiv logopreprintAug 1 2025
Clinical decision-making relies heavily on understanding relative positions of anatomical structures and anomalies. Therefore, for Vision-Language Models (VLMs) to be applicable in clinical practice, the ability to accurately determine relative positions on medical images is a fundamental prerequisite. Despite its importance, this capability remains highly underexplored. To address this gap, we evaluate the ability of state-of-the-art VLMs, GPT-4o, Llama3.2, Pixtral, and JanusPro, and find that all models fail at this fundamental task. Inspired by successful approaches in computer vision, we investigate whether visual prompts, such as alphanumeric or colored markers placed on anatomical structures, can enhance performance. While these markers provide moderate improvements, results remain significantly lower on medical images compared to observations made on natural images. Our evaluations suggest that, in medical imaging, VLMs rely more on prior anatomical knowledge than on actual image content for answering relative position questions, often leading to incorrect conclusions. To facilitate further research in this area, we introduce the MIRP , Medical Imaging Relative Positioning, benchmark dataset, designed to systematically evaluate the capability to identify relative positions in medical images.

Minimum Data, Maximum Impact: 20 annotated samples for explainable lung nodule classification

Luisa Gallée, Catharina Silvia Lisson, Christoph Gerhard Lisson, Daniela Drees, Felix Weig, Daniel Vogele, Meinrad Beer, Michael Götz

arxiv logopreprintAug 1 2025
Classification models that provide human-interpretable explanations enhance clinicians' trust and usability in medical image diagnosis. One research focus is the integration and prediction of pathology-related visual attributes used by radiologists alongside the diagnosis, aligning AI decision-making with clinical reasoning. Radiologists use attributes like shape and texture as established diagnostic criteria and mirroring these in AI decision-making both enhances transparency and enables explicit validation of model outputs. However, the adoption of such models is limited by the scarcity of large-scale medical image datasets annotated with these attributes. To address this challenge, we propose synthesizing attribute-annotated data using a generative model. We enhance the Diffusion Model with attribute conditioning and train it using only 20 attribute-labeled lung nodule samples from the LIDC-IDRI dataset. Incorporating its generated images into the training of an explainable model boosts performance, increasing attribute prediction accuracy by 13.4% and target prediction accuracy by 1.8% compared to training with only the small real attribute-annotated dataset. This work highlights the potential of synthetic data to overcome dataset limitations, enhancing the applicability of explainable models in medical image analysis.

LesiOnTime -- Joint Temporal and Clinical Modeling for Small Breast Lesion Segmentation in Longitudinal DCE-MRI

Mohammed Kamran, Maria Bernathova, Raoul Varga, Christian Singer, Zsuzsanna Bago-Horvath, Thomas Helbich, Georg Langs, Philipp Seeböck

arxiv logopreprintAug 1 2025
Accurate segmentation of small lesions in Breast Dynamic Contrast-Enhanced MRI (DCE-MRI) is critical for early cancer detection, especially in high-risk patients. While recent deep learning methods have advanced lesion segmentation, they primarily target large lesions and neglect valuable longitudinal and clinical information routinely used by radiologists. In real-world screening, detecting subtle or emerging lesions requires radiologists to compare across timepoints and consider previous radiology assessments, such as the BI-RADS score. We propose LesiOnTime, a novel 3D segmentation approach that mimics clinical diagnostic workflows by jointly leveraging longitudinal imaging and BIRADS scores. The key components are: (1) a Temporal Prior Attention (TPA) block that dynamically integrates information from previous and current scans; and (2) a BI-RADS Consistency Regularization (BCR) loss that enforces latent space alignment for scans with similar radiological assessments, thus embedding domain knowledge into the training process. Evaluated on a curated in-house longitudinal dataset of high-risk patients with DCE-MRI, our approach outperforms state-of-the-art single-timepoint and longitudinal baselines by 5% in terms of Dice. Ablation studies demonstrate that both TPA and BCR contribute complementary performance gains. These results highlight the importance of incorporating temporal and clinical context for reliable early lesion segmentation in real-world breast cancer screening. Our code is publicly available at https://github.com/cirmuw/LesiOnTime

Weakly Supervised Intracranial Aneurysm Detection and Segmentation in MR angiography via Multi-task UNet with Vesselness Prior

Erin Rainville, Amirhossein Rasoulian, Hassan Rivaz, Yiming Xiao

arxiv logopreprintAug 1 2025
Intracranial aneurysms (IAs) are abnormal dilations of cerebral blood vessels that, if ruptured, can lead to life-threatening consequences. However, their small size and soft contrast in radiological scans often make it difficult to perform accurate and efficient detection and morphological analyses, which are critical in the clinical care of the disorder. Furthermore, the lack of large public datasets with voxel-wise expert annotations pose challenges for developing deep learning algorithms to address the issues. Therefore, we proposed a novel weakly supervised 3D multi-task UNet that integrates vesselness priors to jointly perform aneurysm detection and segmentation in time-of-flight MR angiography (TOF-MRA). Specifically, to robustly guide IA detection and segmentation, we employ the popular Frangi's vesselness filter to derive soft cerebrovascular priors for both network input and an attention block to conduct segmentation from the decoder and detection from an auxiliary branch. We train our model on the Lausanne dataset with coarse ground truth segmentation, and evaluate it on the test set with refined labels from the same database. To further assess our model's generalizability, we also validate it externally on the ADAM dataset. Our results demonstrate the superior performance of the proposed technique over the SOTA techniques for aneurysm segmentation (Dice = 0.614, 95%HD =1.38mm) and detection (false positive rate = 1.47, sensitivity = 92.9%).
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