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PRO: Projection Domain Synthesis for CT Imaging

Kang Chen, Bin Huang, Xuebin Yang, Junyan Zhang, Qiegen Liu

arxiv logopreprintJun 16 2025
Synthesizing high quality CT projection data remains a significant challenge due to the limited availability of annotated data and the complex nature of CT imaging. In this work, we present PRO, a projection domain synthesis foundation model for CT imaging. To the best of our knowledge, this is the first study that performs CT synthesis in the projection domain. Unlike previous approaches that operate in the image domain, PRO learns rich structural representations from raw projection data and leverages anatomical text prompts for controllable synthesis. This projection domain strategy enables more faithful modeling of underlying imaging physics and anatomical structures. Moreover, PRO functions as a foundation model, capable of generalizing across diverse downstream tasks by adjusting its generative behavior via prompt inputs. Experimental results demonstrated that incorporating our synthesized data significantly improves performance across multiple downstream tasks, including low-dose and sparse-view reconstruction. These findings underscore the versatility and scalability of PRO in data generation for various CT applications. These results highlight the potential of projection domain synthesis as a powerful tool for data augmentation and robust CT imaging. Our source code is publicly available at: https://github.com/yqx7150/PRO.

Brain Imaging Foundation Models, Are We There Yet? A Systematic Review of Foundation Models for Brain Imaging and Biomedical Research

Salah Ghamizi, Georgia Kanli, Yu Deng, Magali Perquin, Olivier Keunen

arxiv logopreprintJun 16 2025
Foundation models (FMs), large neural networks pretrained on extensive and diverse datasets, have revolutionized artificial intelligence and shown significant promise in medical imaging by enabling robust performance with limited labeled data. Although numerous surveys have reviewed the application of FM in healthcare care, brain imaging remains underrepresented, despite its critical role in the diagnosis and treatment of neurological diseases using modalities such as MRI, CT, and PET. Existing reviews either marginalize brain imaging or lack depth on the unique challenges and requirements of FM in this domain, such as multimodal data integration, support for diverse clinical tasks, and handling of heterogeneous, fragmented datasets. To address this gap, we present the first comprehensive and curated review of FMs for brain imaging. We systematically analyze 161 brain imaging datasets and 86 FM architectures, providing information on key design choices, training paradigms, and optimizations driving recent advances. Our review highlights the leading models for various brain imaging tasks, summarizes their innovations, and critically examines current limitations and blind spots in the literature. We conclude by outlining future research directions to advance FM applications in brain imaging, with the aim of fostering progress in both clinical and research settings.

MultiViT2: A Data-augmented Multimodal Neuroimaging Prediction Framework via Latent Diffusion Model

Bi Yuda, Jia Sihan, Gao Yutong, Abrol Anees, Fu Zening, Calhoun Vince

arxiv logopreprintJun 16 2025
Multimodal medical imaging integrates diverse data types, such as structural and functional neuroimaging, to provide complementary insights that enhance deep learning predictions and improve outcomes. This study focuses on a neuroimaging prediction framework based on both structural and functional neuroimaging data. We propose a next-generation prediction model, \textbf{MultiViT2}, which combines a pretrained representative learning base model with a vision transformer backbone for prediction output. Additionally, we developed a data augmentation module based on the latent diffusion model that enriches input data by generating augmented neuroimaging samples, thereby enhancing predictive performance through reduced overfitting and improved generalizability. We show that MultiViT2 significantly outperforms the first-generation model in schizophrenia classification accuracy and demonstrates strong scalability and portability.

PRO: Projection Domain Synthesis for CT Imaging

Kang Chen, Bin Huang, Xuebin Yang, Junyan Zhang, Qiegen Liu

arxiv logopreprintJun 16 2025
Synthesizing high quality CT images remains a signifi-cant challenge due to the limited availability of annotat-ed data and the complex nature of CT imaging. In this work, we present PRO, a novel framework that, to the best of our knowledge, is the first to perform CT image synthesis in the projection domain using latent diffusion models. Unlike previous approaches that operate in the image domain, PRO learns rich structural representa-tions from raw projection data and leverages anatomi-cal text prompts for controllable synthesis. This projec-tion domain strategy enables more faithful modeling of underlying imaging physics and anatomical structures. Moreover, PRO functions as a foundation model, capa-ble of generalizing across diverse downstream tasks by adjusting its generative behavior via prompt inputs. Experimental results demonstrated that incorporating our synthesized data significantly improves perfor-mance across multiple downstream tasks, including low-dose and sparse-view reconstruction, even with limited training data. These findings underscore the versatility and scalability of PRO in data generation for various CT applications. These results highlight the potential of projection domain synthesis as a powerful tool for data augmentation and robust CT imaging. Our source code is publicly available at: https://github.com/yqx7150/PRO.

Ultrasound for breast cancer detection: A bibliometric analysis of global trends between 2004 and 2024.

Sun YY, Shi XT, Xu LL

pubmed logopapersJun 16 2025
With the advancement of computer technology and imaging equipment, ultrasound has emerged as a crucial tool in breast cancer diagnosis. To gain deeper insights into the research landscape of ultrasound in breast cancer diagnosis, this study employed bibliometric methods for a comprehensive analysis spanning from 2004 to 2024, analyzing 3523 articles from 2176 institutions in 82 countries/regions. Over this period, publications on ultrasound diagnosis of breast cancer showed a fluctuating growth trend from 2004 to 2024. Notably, China, Seoul National University and Kim EK emerged as leading contributors in ultrasound for breast cancer detection, with the most published and cited journals being Ultrasound Med Biol and Radiology. The research spots in this area included "breast lesion", "dense breast" and "breast-conserving surgery", while "machine learning", "ultrasonic imaging", "convolutional neural network", "case report", "pathological complete response", "deep learning", "artificial intelligence" and "classification" are anticipated to become future research frontiers. This groundbreaking bibliometric analysis and visualization of ultrasonic breast cancer diagnosis publications offer clinical medical professionals a reliable research focus and direction.

Interpretable deep fuzzy network-aided detection of central lymph node metastasis status in papillary thyroid carcinoma.

Wang W, Ning Z, Zhang J, Zhang Y, Wang W

pubmed logopapersJun 16 2025
The non-invasive assessment of central lymph node metastasis (CLNM) in patients with papillary thyroid carcinoma (PTC) plays a crucial role in assisting treatment decision and prognosis planning. This study aims to use an interpretable deep fuzzy network guided by expert knowledge to predict the CLNM status of patients with PTC from ultrasound images. A total of 1019 PTC patients were enrolled in this study, comprising 465 CLNM patients and 554 non-CLNM patients. Pathological diagnosis served as the gold standard to determine metastasis status. Clinical and morphological features of thyroid were collected as expert knowledge to guide the deep fuzzy network in predicting CLNM status. The network consisted of a region of interest (ROI) segmentation module, a knowledge-aware feature extraction module, and a fuzzy prediction module. The network was trained on 652 patients, validated on 163 patients and tested on 204 patients. The model exhibited promising performance in predicting CLNM status, achieving the area under the receiver operating characteristic curve (AUC), accuracy, precision, sensitivity and specificity of 0.786 (95% CI 0.720-0.846), 0.745 (95% CI 0.681-0.799), 0.727 (95% CI 0.636-0.819), 0.696 (95% CI 0.594-0.789), and 0.786 (95% CI 0.712-0.864), respectively. In addition, the rules of the fuzzy system in the model are easy to understand and explain, and have good interpretability. The deep fuzzy network guided by expert knowledge predicted CLNM status of PTC patients with high accuracy and good interpretability, and may be considered as an effective tool to guide preoperative clinical decision-making.

Classification of glioma grade and Ki-67 level prediction in MRI data: A SHAP-driven interpretation.

Bhuiyan EH, Khan MM, Hossain SA, Rahman R, Luo Q, Hossain MF, Wang K, Sumon MSI, Khalid S, Karaman M, Zhang J, Chowdhury MEH, Zhu W, Zhou XJ

pubmed logopapersJun 16 2025
This study focuses on artificial intelligence-driven classification of glioma and Ki-67 leveling using T2w-FLAIR MRI, exploring the association of Ki-67 biomarkers with deep learning (DL) features through explainable artificial intelligence (XAI) and SHapley Additive exPlanations (SHAP). This IRB-approved study included 101 patients with glioma brain tumor acquired MR images with the T2W-FLAIR sequence. We extracted DL bottleneck features using ResNet50 from glioma MR images. Principal component analysis (PCA) was deployed for dimensionality reduction. XAI was used to identify potential features. The XGBosst classified the histologic grades of the glioma and the level of Ki-67. We integrated potential DL features with patient demographics (age and sex) and Ki-67 biomarkers, utilizing SHAP to determine the model's essential features and interactions. Glioma grade classification and Ki-67 level predictions achieved overall accuracies of 0.94 and 0.91, respectively. It achieved precision scores of 0.92, 0.94, and 0.96 for glioma grades 2, 3, and 4, and 0.88, 0.94, and 0.97 for Ki-67 levels (low: 5%≤Ki-67<10%, moderate: 10%≤Ki-67≤20, and high: Ki-67>20%). Corresponding F1-scores were 0.95, 0.88, and 0.96 for glioma grades and 0.92, 0.93, and 0.87 for Ki-67 levels. SHAP analysis further highlighted a strong association between bottleneck DL features and Ki-67 biomarkers, demonstrating their potential to differentiate glioma grades and Ki-67 levels while offering valuable insights into glioma aggressiveness. This study demonstrates the precise classification of glioma grades and the prediction of Ki-67 levels to underscore the potential of AI-driven MRI analysis to enhance clinical decision-making in glioma management.

GM-LDM: Latent Diffusion Model for Brain Biomarker Identification through Functional Data-Driven Gray Matter Synthesis

Hu Xu, Yang Jingling, Jia Sihan, Bi Yuda, Calhoun Vince

arxiv logopreprintJun 15 2025
Generative models based on deep learning have shown significant potential in medical imaging, particularly for modality transformation and multimodal fusion in MRI-based brain imaging. This study introduces GM-LDM, a novel framework that leverages the latent diffusion model (LDM) to enhance the efficiency and precision of MRI generation tasks. GM-LDM integrates a 3D autoencoder, pre-trained on the large-scale ABCD MRI dataset, achieving statistical consistency through KL divergence loss. We employ a Vision Transformer (ViT)-based encoder-decoder as the denoising network to optimize generation quality. The framework flexibly incorporates conditional data, such as functional network connectivity (FNC) data, enabling personalized brain imaging, biomarker identification, and functional-to-structural information translation for brain diseases like schizophrenia.

MRI-CORE: A Foundation Model for Magnetic Resonance Imaging

Haoyu Dong, Yuwen Chen, Hanxue Gu, Nicholas Konz, Yaqian Chen, Qihang Li, Maciej A. Mazurowski

arxiv logopreprintJun 13 2025
The widespread use of Magnetic Resonance Imaging (MRI) and the rise of deep learning have enabled the development of powerful predictive models for a wide range of diagnostic tasks in MRI, such as image classification or object segmentation. However, training models for specific new tasks often requires large amounts of labeled data, which is difficult to obtain due to high annotation costs and data privacy concerns. To circumvent this issue, we introduce MRI-CORE (MRI COmprehensive Representation Encoder), a vision foundation model pre-trained using more than 6 million slices from over 110,000 MRI volumes across 18 main body locations. Experiments on five diverse object segmentation tasks in MRI demonstrate that MRI-CORE can significantly improve segmentation performance in realistic scenarios with limited labeled data availability, achieving an average gain of 6.97% 3D Dice Coefficient using only 10 annotated slices per task. We further demonstrate new model capabilities in MRI such as classification of image properties including body location, sequence type and institution, and zero-shot segmentation. These results highlight the value of MRI-CORE as a generalist vision foundation model for MRI, potentially lowering the data annotation resource barriers for many applications.

Exploring the Effectiveness of Deep Features from Domain-Specific Foundation Models in Retinal Image Synthesis

Zuzanna Skorniewska, Bartlomiej W. Papiez

arxiv logopreprintJun 13 2025
The adoption of neural network models in medical imaging has been constrained by strict privacy regulations, limited data availability, high acquisition costs, and demographic biases. Deep generative models offer a promising solution by generating synthetic data that bypasses privacy concerns and addresses fairness by producing samples for under-represented groups. However, unlike natural images, medical imaging requires validation not only for fidelity (e.g., Fr\'echet Inception Score) but also for morphological and clinical accuracy. This is particularly true for colour fundus retinal imaging, which requires precise replication of the retinal vascular network, including vessel topology, continuity, and thickness. In this study, we in-vestigated whether a distance-based loss function based on deep activation layers of a large foundational model trained on large corpus of domain data, colour fundus imaging, offers advantages over a perceptual loss and edge-detection based loss functions. Our extensive validation pipeline, based on both domain-free and domain specific tasks, suggests that domain-specific deep features do not improve autoen-coder image generation. Conversely, our findings highlight the effectiveness of con-ventional edge detection filters in improving the sharpness of vascular structures in synthetic samples.
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