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2.5D deep learning radiomics and clinical data for predicting occult lymph node metastasis in lung adenocarcinoma.

Huang X, Huang X, Wang K, Bai H, Lu X, Jin G

pubmed logopapersJul 1 2025
Occult lymph node metastasis (OLNM) refers to lymph node involvement that remains undetectable by conventional imaging techniques, posing a significant challenge in the accurate staging of lung adenocarcinoma. This study aims to investigate the potential of combining 2.5D deep learning radiomics with clinical data to predict OLNM in lung adenocarcinoma. Retrospective contrast-enhanced CT images were collected from 1,099 patients diagnosed with lung adenocarcinoma across two centers. Multivariable analysis was performed to identify independent clinical risk factors for constructing clinical signatures. Radiomics features were extracted from the enhanced CT images to develop radiomics signatures. A 2.5D deep learning approach was used to extract deep learning features from the images, which were then aggregated using multi-instance learning (MIL) to construct MIL signatures. Deep learning radiomics (DLRad) signatures were developed by integrating the deep learning features with radiomic features. These were subsequently combined with clinical features to form the combined signatures. The performance of the resulting signatures was evaluated using the area under the curve (AUC). The clinical model achieved AUCs of 0.903, 0.866, and 0.785 in the training, validation, and external test cohorts The radiomics model yielded AUCs of 0.865, 0.892, and 0.796 in the training, validation, and external test cohorts. The MIL model demonstrated AUCs of 0.903, 0.900, and 0.852 in the training, validation, and external test cohorts, respectively. The DLRad model showed AUCs of 0.910, 0.908, and 0.875 in the training, validation, and external test cohorts. Notably, the combined model consistently outperformed all other models, achieving AUCs of 0.940, 0.923, and 0.898 in the training, validation, and external test cohorts. The integration of 2.5D deep learning radiomics with clinical data demonstrates strong capability for OLNM in lung adenocarcinoma, potentially aiding clinicians in developing more personalized treatment strategies.

Evaluation of a fusion model combining deep learning models based on enhanced CT images with radiological and clinical features in distinguishing lipid-poor adrenal adenoma from metastatic lesions.

Wang SC, Yin SN, Wang ZY, Ding N, Ji YD, Jin L

pubmed logopapersJul 1 2025
To evaluate the diagnostic performance of a machine learning model combining deep learning models based on enhanced CT images with radiological and clinical features in differentiating lipid-poor adrenal adenomas from metastatic tumors, and to explain the model's prediction results through SHAP(Shapley Additive Explanations) analysis. A retrospective analysis was conducted on abdominal contrast-enhanced CT images and clinical data from 416 pathologically confirmed adrenal tumor patients at our hospital from July 2019 to December 2024. Patients were randomly divided into training and testing sets in a 7:3 ratio. Six convolutional neural network (CNN)-based deep learning models were employed, and the model with the highest diagnostic performance was selected based on the area under curve(AUC) of the ROC. Subsequently, multiple machine learning models incorporating clinical and radiological features were developed and evaluated using various indicators and AUC.The best-performing machine learning model was further analyzed using SHAP plots to enhance interpretability and quantify feature contributions. All six deep learning models demonstrated excellent diagnostic performance, with AUC values exceeding 0.8, among which ResNet50 achieved the highest AUC. Among the 10 machine learning models incorporating clinical and imaging features, the extreme gradient boosting(XGBoost) model exhibited the best accuracy(ACC), sensitivity, and AUC, indicating superior diagnostic performance.SHAP analysis revealed contributions from ResNet50, RPW, age, and other key features in model predictions. Machine learning models based on contrast-enhanced CT combined with clinical and imaging features exhibit outstanding diagnostic performance in differentiating lipid-poor adrenal adenomas from metastases.

Computed tomography-based radiomics predicts prognostic and treatment-related levels of immune infiltration in the immune microenvironment of clear cell renal cell carcinoma.

Song S, Ge W, Qi X, Che X, Wang Q, Wu G

pubmed logopapersJul 1 2025
The composition of the tumour microenvironment is very complex, and measuring the extent of immune cell infiltration can provide an important guide to clinically significant treatments for cancer, such as immune checkpoint inhibition therapy and targeted therapy. We used multiple machine learning (ML) models to predict differences in immune infiltration in clear cell renal cell carcinoma (ccRCC), with computed tomography (CT) imaging pictures serving as a model for machine learning. We also statistically analysed and compared the results of multiple typing models and explored an excellent non-invasive and convenient method for treatment of ccRCC patients and explored a better, non-invasive and convenient prediction method for ccRCC patients. The study included 539 ccRCC samples with clinicopathological information and associated genetic information from The Cancer Genome Atlas (TCGA) database. The Single Sample Gene Set Enrichment Analysis (ssGSEA) algorithm was used to obtain the immune cell infiltration results as well as the cluster analysis results. ssGSEA-based analysis was used to obtain the immune cell infiltration levels, and the Boruta algorithm was further used to downscale the obtained positive/negative gene sets to obtain the immune infiltration level groupings. Multifactor Cox regression analysis was used to calculate the immunotherapy response of subgroups according to Tumor Immune Dysfunction and Exclusion (TIDE) algorithm and subgraph algorithm to detect the difference in survival time and immunotherapy response of ccRCC patients with immune infiltration. Radiomics features were screened using LASSO analysis. Eight ML algorithms were selected for diagnostic analysis of the test set. Receiver operating characteristic (ROC) curve was used to evaluate the performance of the model. Draw decision curve analysis (DCA) to evaluate the clinical personalized medical value of the predictive model. The high/low subtypes of immune infiltration levels obtained by optimisation based on the Boruta algorithm were statistically different in the survival analysis of ccRCC patients. Multifactorial immune infiltration level combined with clinical factors better predicted survival of ccRCC patients, and ccRCC with high immune infiltration may benefit more from anti-PD-1 therapy. Among the eight machine learning models, ExtraTrees had the highest test and training set ROC AUCs of 1.000 and 0.753; in the test set, LR and LightGBM had the highest sensitivity of 0.615; LR, SVM, ExtraTrees, LightGBM and MLP had higher specificities of 0.789, 1.000, 0.842, 0.789 and 0.789, respectively; and LR, ExtraTrees and LightGBM had the highest accuracy of 0. 719, 0.688 and 0.719 respectively. Therefore, the CT-based ML achieved good predictive results in predicting immune infiltration in ccRCC, with the ExtraTrees machine learning algorithm being optimal. The use of radiomics model based on renal CT images can be noninvasively used to predict the immune infiltration level of ccRCC as well as combined with clinical information to create columnar plots predicting total survival in people with ccRCC and to predict responsiveness to ICI therapy, findings that may be useful in stratifying the prognosis of patients with ccRCC and guiding clinical practitioners to develop individualized regimens in the treatment of their patients.

Development and validation of a machine learning model for central compartmental lymph node metastasis in solitary papillary thyroid microcarcinoma via ultrasound imaging features and clinical parameters.

Han H, Sun H, Zhou C, Wei L, Xu L, Shen D, Hu W

pubmed logopapersJul 1 2025
Papillary thyroid microcarcinoma (PTMC) is the most common malignant subtype of thyroid cancer. Preoperative assessment of the risk of central compartment lymph node metastasis (CCLNM) can provide scientific support for personalized treatment decisions prior to microwave ablation of thyroid nodules. The objective of this study was to develop a predictive model for CCLNM in patients with solitary PTMC on the basis of a combination of ultrasound radiomics and clinical parameters. We retrospectively analyzed data from 480 patients diagnosed with PTMC via postoperative pathological examination. The patients were randomly divided into a training set (n = 336) and a validation set (n = 144) at a 7:3 ratio. The cohort was stratified into a metastasis group and a nonmetastasis group on the basis of postoperative pathological results. Ultrasound radiomic features were extracted from routine thyroid ultrasound images, and multiple feature selection methods were applied to construct radiomic models for each group. Independent risk factors, along with radiomics features identified through multivariate logistic regression analysis, were subsequently refined through additional feature selection techniques to develop combined predictive models. The performance of each model was then evaluated. The combined model, which incorporates age, the presence of Hashimoto's thyroiditis (HT), and radiomics features selected via an optimal feature selection approach (percentage-based), exhibited superior predictive efficacy, with AUC values of 0.767 (95% CI: 0.716-0.818) in the training set and 0.729 (95% CI: 0.648-0.810) in the validation set. A machine learning-based model combining ultrasound radiomics and clinical variables shows promise for the preoperative risk stratification of CCLNM in patients with PTMC. However, further validation in larger, more diverse cohorts is needed before clinical application. Not applicable.

Development and validation of CT-based fusion model for preoperative prediction of invasion and lymph node metastasis in adenocarcinoma of esophagogastric junction.

Cao M, Xu R, You Y, Huang C, Tong Y, Zhang R, Zhang Y, Yu P, Wang Y, Chen W, Cheng X, Zhang L

pubmed logopapersJul 1 2025
In the context of precision medicine, radiomics has become a key technology in solving medical problems. For adenocarcinoma of esophagogastric junction (AEG), developing a preoperative CT-based prediction model for AEG invasion and lymph node metastasis is crucial. We retrospectively collected 256 patients with AEG from two centres. The radiomics features were extracted from the preoperative diagnostic CT images, and the feature selection method and machine learning method were applied to reduce the feature size and establish the predictive imaging features. By comparing the three machine learning methods, the best radiomics nomogram was selected, and the average AUC was obtained by 20 repeats of fivefold cross-validation for comparison. The fusion model was constructed by logistic regression combined with clinical factors. On this basis, ROC curve, calibration curve and decision curve of the fusion model are constructed. The predictive efficacy of fusion model for tumour invasion depth was higher than that of radiomics nomogram, with an AUC of 0.764 vs. 0.706 in the test set, P < 0.001, internal validation set 0.752 vs. 0.697, P < 0.001, and external validation set 0.756 vs. 0.687, P < 0.001, respectively. The predictive efficacy of the lymph node metastasis fusion model was higher than that of the radiomics nomogram, with an AUC of 0.809 vs. 0.732 in the test set, P < 0.001, internal validation set 0.841 vs. 0.718, P < 0.001, and external validation set 0.801 vs. 0.680, P < 0.001, respectively. We have developed a fusion model combining radiomics and clinical risk factors, which is crucial for the accurate preoperative diagnosis and treatment of AEG, advancing precision medicine. It may also spark discussions on the imaging feature differences between AEG and GC (Gastric cancer).

Differential dementia detection from multimodal brain images in a real-world dataset.

Leming M, Im H

pubmed logopapersJul 1 2025
Artificial intelligence (AI) models have been applied to differential dementia detection tasks in brain images from curated, high-quality benchmark databases, but not real-world data in hospitals. We describe a deep learning model specially trained for disease detection in heterogeneous clinical images from electronic health records without focusing on confounding factors. It encodes up to 14 multimodal images, alongside age and demographics, and outputs the likelihood of vascular dementia, Alzheimer's, Lewy body dementia, Pick's disease, mild cognitive impairment, and unspecified dementia. We use data from Massachusetts General Hospital (183,018 images from 11,015 patients) for training and external data (125,493 images from 6,662 patients) for testing. Performance ranged between 0.82 and 0.94 area under the curve (AUC) on data from 1003 sites. Analysis shows that the model focused on subcortical brain structures as the basis for its decisions. By detecting biomarkers in real-world data, the presented techniques will help with clinical translation of disease detection AI. Our artificial intelligence (AI) model can detect neurodegenerative disorders in brain imaging electronic health record (EHR) data. It encodes up to 14 brain images and text information from a single patient's EHR. Attention maps show that the model focuses on subcortical brain structures. Performance ranged from 0.82 to 0.94 area under the curve (AUC) on data from 1003 external sites.

Radiomics and machine learning for osteoporosis detection using abdominal computed tomography: a retrospective multicenter study.

Liu Z, Li Y, Zhang C, Xu H, Zhao J, Huang C, Chen X, Ren Q

pubmed logopapersJul 1 2025
This study aimed to develop and validate a predictive model to detect osteoporosis using radiomic features and machine learning (ML) approaches from lumbar spine computed tomography (CT) images during an abdominal CT examination. A total of 509 patients who underwent both quantitative CT (QCT) and abdominal CT examinations (training group, n = 279; internal validation group, n = 120; external validation group, n = 110) were analyzed in this retrospective study from two centers. Radiomic features were extracted from the lumbar spine CT images. Seven radiomic-based ML models, including logistic regression (LR), Bernoulli, Gaussian NB, SGD, decision tree, support vector machine (SVM), and K-nearest neighbor (KNN) models, were constructed. The performance of the models was assessed using the area under the curve (AUC) of receiver operating characteristic (ROC) curve analysis and decision curve analysis (DCA). The radiomic model based on LR in the internal validation group and external validation group had excellent performance, with an AUC of 0.960 and 0.786 for differentiating osteoporosis from normal BMD and osteopenia, respectively. The radiomic model based on LR in the internal validation group and Gaussian NB model in the external validation group yielded the highest performance, with an AUC of 0.905 and 0.839 for discriminating normal BMD from osteopenia and osteoporosis, respectively. DCA in the internal validation group revealed that the LR model had greater net benefit than the other models in differentiating osteoporosis from normal BMD and osteopenia. Radiomic-based ML approaches may be used to predict osteoporosis from abdominal CT images and as a tool for opportunistic osteoporosis screening.

Contrast-enhanced mammography-based interpretable machine learning model for the prediction of the molecular subtype breast cancers.

Ma M, Xu W, Yang J, Zheng B, Wen C, Wang S, Xu Z, Qin G, Chen W

pubmed logopapersJul 1 2025
This study aims to establish a machine learning prediction model to explore the correlation between contrast-enhanced mammography (CEM) imaging features and molecular subtypes of mass-type breast cancer. This retrospective study included women with breast cancer who underwent CEM preoperatively between 2018 and 2021. We included 241 patients, which were randomly assigned to either a training or a test set in a 7:3 ratio. Twenty-one features were visually described, including four clinical features and seventeen radiological features, these radiological features which extracted from the CEM. Three binary classifications of subtypes were performed: Luminal vs. non-Luminal, HER2-enriched vs. non-HER2-enriched, and triple-negative (TNBC) vs. non-triple-negative. A multinomial naive Bayes (MNB) machine learning scheme was employed for the classification, and the least absolute shrink age and selection operator method were used to select the most predictive features for the classifiers. The classification performance was evaluated using the area under the receiver operating characteristic curve. We also utilized SHapley Additive exPlanation (SHAP) values to explain the prediction model. The model that used a combination of low energy (LE) and dual-energy subtraction (DES) achieved the best performance compared to using either of the two images alone, yielding an area under the receiver operating characteristic curve of 0.798 for Luminal vs. non-Luminal subtypes, 0.695 for TNBC vs. non-TNBC, and 0.773 for HER2-enriched vs. non-HER2-enriched. The SHAP algorithm shows that "LE_mass_margin_spiculated," "DES_mass_enhanced_margin_spiculated," and "DES_mass_internal_enhancement_homogeneous" have the most significant impact on the model's performance in predicting Luminal and non-Luminal breast cancer. "mass_calcification_relationship_no," "calcification_ type_no," and "LE_mass_margin_spiculated" have a considerable impact on the model's performance in predicting HER2 and non-HER2 breast cancer. The radiological characteristics of breast tumors extracted from CEM were found to be associated with breast cancer subtypes in our study. Future research is needed to validate these findings.

Multimodal deep learning-based radiomics for meningioma consistency prediction: integrating T1 and T2 MRI in a multi-center study.

Lin H, Yue Y, Xie L, Chen B, Li W, Yang F, Zhang Q, Chen H

pubmed logopapersJul 1 2025
Meningioma consistency critically impacts surgical planning, as soft tumors are easier to resect than hard tumors. Current assessments of tumor consistency using MRI are subjective and lack quantitative accuracy. Integrating deep learning and radiomics could enhance the predictive accuracy of meningioma consistency. A retrospective study analyzed 204 meningioma patients from two centers: the Second Affiliated Hospital of Guangzhou Medical University and the Southern Theater Command Hospital PLA. Three models-a radiomics model (Rad_Model), a deep learning model (DL_Model), and a combined model (DLR_Model)-were developed. Model performance was evaluated using AUC, accuracy, sensitivity, specificity, and precision. The DLR_Model outperformed other models across all cohorts. In the training set, it achieved AUC 0.957, accuracy of 0.908, and precision of 0.965. In the external test cohort, it maintained superior performance with an AUC of 0.854, accuracy of 0.778, and precision of 0.893, surpassing both the Rad_Model (AUC = 0.768) and DL_Model (AUC = 0.720). Combining radiomics and deep learning features improved predictive performance and robustness. Our study introduced and evaluated a deep learning radiomics model (DLR-Model) to accurately predict the consistency of meningiomas, which has the potential to improve preoperative assessments and surgical planning.
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