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Real-time Monitoring of Urinary Stone Status During Shockwave Lithotripsy.

Noble PA

pubmed logopapersJul 24 2025
To develop a standardized, real-time feedback system for monitoring urinary stone fragmentation during shockwave lithotripsy (SWL), thereby optimizing treatment efficacy and minimizing patient risk. A two-pronged approach was implemented to quantify stone fragmentation in C-arm X-ray images. First, the initial pre-treatment stone image was compared to subsequent images to measure stone area loss. Second, a Convolutional Neural Network (CNN) was trained to estimate the probability that an image contains a urinary stone. These two criteria were integrated to create a real-time signaling system capable of evaluating shockwave efficacy during SWL. The system was developed using data from 522 shockwave treatments encompassing 4,057 C-arm X-ray images. The combined area-loss metric and CNN output enabled consistent real-time assessment of stone fragmentation, providing actionable feedback to guide SWL in diverse clinical contexts. The proposed system offers a novel and reliable method for monitoring of urinary stone fragmentation during SWL. By helping to balance treatment efficacy with patient safety, it holds significant promise for semi-automated SWL platforms, particularly in resource-limited or remote environments such as arid regions and extended space missions.

Non-invasive meningitis screening in neonates and infants: multicentre international study.

Ajanovic S, Jobst B, Jiménez J, Quesada R, Santos F, Carandell F, Lopez-Azorín M, Valverde E, Ybarra M, Bravo MC, Petrone P, Sial H, Muñoz D, Agut T, Salas B, Carreras N, Alarcón A, Iriondo M, Luaces C, Sidat M, Zandamela M, Rodrigues P, Graça D, Ngovene S, Bramugy J, Cossa A, Mucasse C, Buck WC, Arias S, El Abbass C, Tligi H, Barkat A, Ibáñez A, Parrilla M, Elvira L, Calvo C, Pellicer A, Cabañas F, Bassat Q

pubmed logopapersJul 23 2025
Meningitis diagnosis requires a lumbar puncture (LP) to obtain cerebrospinal fluid (CSF) for a laboratory-based analysis. In high-income settings, LPs are part of the systematic approach to screen for meningitis, and most yield negative results. In low- and middle-income settings, LPs are seldom performed, and suspected cases are often treated empirically. The aim of this study was to validate a non-invasive transfontanellar white blood cell (WBC) counter in CSF to screen for meningitis. We conducted a prospective study across three Spanish hospitals, one Mozambican and one Moroccan hospital (2020-2023). We included patients under 24 months with suspected meningitis, an open fontanelle, and a LP performed within 24 h from recruitment. High-resolution-ultrasound (HRUS) images of the CSF were obtained using a customized probe. A deep-learning model was trained to classify CSF patterns based on LPs WBC counts, using a 30cells/mm<sup>3</sup> threshold. The algorithm was applied to 3782 images from 76 patients. It correctly classified 17/18 CSFs with <math xmlns="http://www.w3.org/1998/Math/MathML"><mo>≥</mo></math> 30 WBC, and 55/58 controls (sensitivity 94.4%, specificity 94.8%). The only false negative was paired to a traumatic LP with 40 corrected WBC/mm<sup>3</sup>. This non-invasive device could be an accurate tool for screening meningitis in neonates and young infants, modulating LP indications. Our non-invasive, high-resolution ultrasound device achieved 94% accuracy in detecting elevated leukocyte counts in neonates and infants with suspected meningitis, compared to the gold standard (lumbar punctures and laboratory analysis). This first-in-class screening device introduces the first non-invasive method for neonatal and infant meningitis screening, potentially modulating lumbar puncture indications. This technology could substantially reduce lumbar punctures in low-suspicion cases and provides a viable alternative critically ill patients worldwide or in settings where lumbar punctures are unfeasible, especially in low-income countries).

AURA: A Multi-Modal Medical Agent for Understanding, Reasoning & Annotation

Nima Fathi, Amar Kumar, Tal Arbel

arxiv logopreprintJul 22 2025
Recent advancements in Large Language Models (LLMs) have catalyzed a paradigm shift from static prediction systems to agentic AI agents capable of reasoning, interacting with tools, and adapting to complex tasks. While LLM-based agentic systems have shown promise across many domains, their application to medical imaging remains in its infancy. In this work, we introduce AURA, the first visual linguistic explainability agent designed specifically for comprehensive analysis, explanation, and evaluation of medical images. By enabling dynamic interactions, contextual explanations, and hypothesis testing, AURA represents a significant advancement toward more transparent, adaptable, and clinically aligned AI systems. We highlight the promise of agentic AI in transforming medical image analysis from static predictions to interactive decision support. Leveraging Qwen-32B, an LLM-based architecture, AURA integrates a modular toolbox comprising: (i) a segmentation suite with phase grounding, pathology segmentation, and anatomy segmentation to localize clinically meaningful regions; (ii) a counterfactual image-generation module that supports reasoning through image-level explanations; and (iii) a set of evaluation tools including pixel-wise difference-map analysis, classification, and advanced state-of-the-art components to assess diagnostic relevance and visual interpretability.

CXR-TFT: Multi-Modal Temporal Fusion Transformer for Predicting Chest X-ray Trajectories

Mehak Arora, Ayman Ali, Kaiyuan Wu, Carolyn Davis, Takashi Shimazui, Mahmoud Alwakeel, Victor Moas, Philip Yang, Annette Esper, Rishikesan Kamaleswaran

arxiv logopreprintJul 19 2025
In intensive care units (ICUs), patients with complex clinical conditions require vigilant monitoring and prompt interventions. Chest X-rays (CXRs) are a vital diagnostic tool, providing insights into clinical trajectories, but their irregular acquisition limits their utility. Existing tools for CXR interpretation are constrained by cross-sectional analysis, failing to capture temporal dynamics. To address this, we introduce CXR-TFT, a novel multi-modal framework that integrates temporally sparse CXR imaging and radiology reports with high-frequency clinical data, such as vital signs, laboratory values, and respiratory flow sheets, to predict the trajectory of CXR findings in critically ill patients. CXR-TFT leverages latent embeddings from a vision encoder that are temporally aligned with hourly clinical data through interpolation. A transformer model is then trained to predict CXR embeddings at each hour, conditioned on previous embeddings and clinical measurements. In a retrospective study of 20,000 ICU patients, CXR-TFT demonstrated high accuracy in forecasting abnormal CXR findings up to 12 hours before they became radiographically evident. This predictive capability in clinical data holds significant potential for enhancing the management of time-sensitive conditions like acute respiratory distress syndrome, where early intervention is crucial and diagnoses are often delayed. By providing distinctive temporal resolution in prognostic CXR analysis, CXR-TFT offers actionable 'whole patient' insights that can directly improve clinical outcomes.

A clinically relevant morpho-molecular classification of lung neuroendocrine tumours

Sexton-Oates, A., Mathian, E., Candeli, N., Lim, Y., Voegele, C., Di Genova, A., Mange, L., Li, Z., van Weert, T., Hillen, L. M., Blazquez-Encinas, R., Gonzalez-Perez, A., Morrison, M. L., Lauricella, E., Mangiante, L., Bonheme, L., Moonen, L., Absenger, G., Altmuller, J., Degletagne, C., Brustugun, O. T., Cahais, V., Centonze, G., Chabrier, A., Cuenin, C., Damiola, F., de Montpreville, V. T., Deleuze, J.-F., Dingemans, A.-M. C., Fadel, E., Gadot, N., Ghantous, A., Graziano, P., Hofman, P., Hofman, V., Ibanez-Costa, A., Lacomme, S., Lopez-Bigas, N., Lund-Iversen, M., Milione, M., Muscarella, L

medrxiv logopreprintJul 18 2025
Lung neuroendocrine tumours (NETs, also known as carcinoids) are rapidly rising in incidence worldwide but have unknown aetiology and limited therapeutic options beyond surgery. We conducted multi-omic analyses on over 300 lung NETs including whole-genome sequencing (WGS), transcriptome profiling, methylation arrays, spatial RNA sequencing, and spatial proteomics. The integration of multi-omic data provides definitive proof of the existence of four strikingly different molecular groups that vary in patient characteristics, genomic and transcriptomic profiles, microenvironment, and morphology, as much as distinct diseases. Among these, we identify a new molecular group, enriched for highly aggressive supra-carcinoids, that displays an immune-rich microenvironment linked to tumour--macrophage crosstalk, and we uncover an undifferentiated cell population within supra-carcinoids, explaining their molecular and behavioural link to high-grade lung neuroendocrine carcinomas. Deep learning models accurately identified the Ca A1, Ca A2, and Ca B groups based on morphology alone, outperforming current histological criteria. The characteristic tumour microenvironment of supra-carcinoids and the validation of a panel of immunohistochemistry markers for the other three molecular groups demonstrates that these groups can be accurately identified based solely on morphological features, facilitating their implementation in the clinical setting. Our proposed morpho-molecular classification highlights group-specific therapeutic opportunities, including DLL3, FGFR, TERT, and BRAF inhibitors. Overall, our findings unify previously proposed molecular classifications and refine the lung cancer map by revealing novel tumour types and potential treatments, with significant implications for prognosis and treatment decision-making.

Localized FNO for Spatiotemporal Hemodynamic Upsampling in Aneurysm MRI

Kyriakos Flouris, Moritz Halter, Yolanne Y. R. Lee, Samuel Castonguay, Luuk Jacobs, Pietro Dirix, Jonathan Nestmann, Sebastian Kozerke, Ender Konukoglu

arxiv logopreprintJul 18 2025
Hemodynamic analysis is essential for predicting aneurysm rupture and guiding treatment. While magnetic resonance flow imaging enables time-resolved volumetric blood velocity measurements, its low spatiotemporal resolution and signal-to-noise ratio limit its diagnostic utility. To address this, we propose the Localized Fourier Neural Operator (LoFNO), a novel 3D architecture that enhances both spatial and temporal resolution with the ability to predict wall shear stress (WSS) directly from clinical imaging data. LoFNO integrates Laplacian eigenvectors as geometric priors for improved structural awareness on irregular, unseen geometries and employs an Enhanced Deep Super-Resolution Network (EDSR) layer for robust upsampling. By combining geometric priors with neural operator frameworks, LoFNO de-noises and spatiotemporally upsamples flow data, achieving superior velocity and WSS predictions compared to interpolation and alternative deep learning methods, enabling more precise cerebrovascular diagnostics.

Acoustic Index: A Novel AI-Driven Parameter for Cardiac Disease Risk Stratification Using Echocardiography

Beka Begiashvili, Carlos J. Fernandez-Candel, Matías Pérez Paredes

arxiv logopreprintJul 17 2025
Traditional echocardiographic parameters such as ejection fraction (EF) and global longitudinal strain (GLS) have limitations in the early detection of cardiac dysfunction. EF often remains normal despite underlying pathology, and GLS is influenced by load conditions and vendor variability. There is a growing need for reproducible, interpretable, and operator-independent parameters that capture subtle and global cardiac functional alterations. We introduce the Acoustic Index, a novel AI-derived echocardiographic parameter designed to quantify cardiac dysfunction from standard ultrasound views. The model combines Extended Dynamic Mode Decomposition (EDMD) based on Koopman operator theory with a hybrid neural network that incorporates clinical metadata. Spatiotemporal dynamics are extracted from echocardiographic sequences to identify coherent motion patterns. These are weighted via attention mechanisms and fused with clinical data using manifold learning, resulting in a continuous score from 0 (low risk) to 1 (high risk). In a prospective cohort of 736 patients, encompassing various cardiac pathologies and normal controls, the Acoustic Index achieved an area under the curve (AUC) of 0.89 in an independent test set. Cross-validation across five folds confirmed the robustness of the model, showing that both sensitivity and specificity exceeded 0.8 when evaluated on independent data. Threshold-based analysis demonstrated stable trade-offs between sensitivity and specificity, with optimal discrimination near this threshold. The Acoustic Index represents a physics-informed, interpretable AI biomarker for cardiac function. It shows promise as a scalable, vendor-independent tool for early detection, triage, and longitudinal monitoring. Future directions include external validation, longitudinal studies, and adaptation to disease-specific classifiers.

The application of super-resolution ultrasound radiomics models in predicting the failure of conservative treatment for ectopic pregnancy.

Zhang M, Sheng J

pubmed logopapersJul 17 2025
Conservative treatment remains a viable option for selected patients with ectopic pregnancy (EP), but failure may lead to rupture and serious complications. Currently, serum β-hCG is the main predictor for treatment outcomes, yet its accuracy is limited. This study aimed to develop and validate a predictive model that integrates radiomic features derived from super-resolution (SR) ultrasound images with clinical biomarkers to improve risk stratification. A total of 228 patients with EP receiving conservative treatment were retrospectively included, with 169 classified as treatment success and 59 as failure. SR images were generated using a deep learning-based generative adversarial network (GAN). Radiomic features were extracted from both normal-resolution (NR) and SR ultrasound images. Features with intraclass correlation coefficient (ICC) ≥ 0.75 were retained after intra- and inter-observer evaluation. Feature selection involved statistical testing and Least Absolute Shrinkage and Selection Operator (LASSO) regression. Random forest algorithms were used to construct NR and SR models. A clinical model based on serum β-hCG was also developed. The Clin-SR model was constructed by fusing SR radiomics with β-hCG values. Model performance was evaluated using area under the curve (AUC), calibration, and decision curve analysis (DCA). An independent temporal validation cohort (n = 40; 20 failures, 20 successes) was used to validation of the nomogram derived from the Clin-SR model. The SR model significantly outperformed the NR model in the test cohort (AUC: 0.791 ± 0.015 vs. 0.629 ± 0.083). In a representative iteration, the Clin-SR fusion model achieved an AUC of 0.870 ± 0.015, with good calibration and net clinical benefit, suggesting reliable performance in predicting conservative treatment failure. In the independent validation cohort, the nomogram demonstrated good generalizability with an AUC of 0.808 and consistent calibration across risk thresholds. Key contributing radiomic features included Gray Level Variance and Voxel Volume, reflecting lesion heterogeneity and size. The Clin-SR model, which integrates deep learning-enhanced SR ultrasound radiomics with serum β-hCG, offers a robust and non-invasive tool for predicting conservative treatment failure in ectopic pregnancy. This multimodal approach enhances early risk stratification and supports personalized clinical decision-making, potentially reducing overtreatment and emergency interventions.

Real-time, inline quantitative MRI enabled by scanner-integrated machine learning: a proof of principle with NODDI

Samuel Rot, Iulius Dragonu, Christina Triantafyllou, Matthew Grech-Sollars, Anastasia Papadaki, Laura Mancini, Stephen Wastling, Jennifer Steeden, John Thornton, Tarek Yousry, Claudia A. M. Gandini Wheeler-Kingshott, David L. Thomas, Daniel C. Alexander, Hui Zhang

arxiv logopreprintJul 16 2025
Purpose: The clinical feasibility and translation of many advanced quantitative MRI (qMRI) techniques are inhibited by their restriction to 'research mode', due to resource-intensive, offline parameter estimation. This work aimed to achieve 'clinical mode' qMRI, by real-time, inline parameter estimation with a trained neural network (NN) fully integrated into a vendor's image reconstruction environment, therefore facilitating and encouraging clinical adoption of advanced qMRI techniques. Methods: The Siemens Image Calculation Environment (ICE) pipeline was customised to deploy trained NNs for advanced diffusion MRI parameter estimation with Open Neural Network Exchange (ONNX) Runtime. Two fully-connected NNs were trained offline with data synthesised with the neurite orientation dispersion and density imaging (NODDI) model, using either conventionally estimated (NNMLE) or ground truth (NNGT) parameters as training labels. The strategy was demonstrated online with an in vivo acquisition and evaluated offline with synthetic test data. Results: NNs were successfully integrated and deployed natively in ICE, performing inline, whole-brain, in vivo NODDI parameter estimation in <10 seconds. DICOM parametric maps were exported from the scanner for further analysis, generally finding that NNMLE estimates were more consistent than NNGT with conventional estimates. Offline evaluation confirms that NNMLE has comparable accuracy and slightly better noise robustness than conventional fitting, whereas NNGT exhibits compromised accuracy at the benefit of higher noise robustness. Conclusion: Real-time, inline parameter estimation with the proposed generalisable framework resolves a key practical barrier to clinical uptake of advanced qMRI methods and enables their efficient integration into clinical workflows.

Super-resolution deep learning in pediatric CTA for congenital heart disease: enhancing intracardiac visualization under free-breathing conditions.

Zhou X, Xiong D, Liu F, Li J, Tan N, Duan X, Du X, Ouyang Z, Bao S, Ke T, Zhao Y, Tao J, Dong X, Wang Y, Liao C

pubmed logopapersJul 16 2025
This study assesses the effectiveness of super-resolution deep learning reconstruction (SR-DLR), conventional deep learning reconstruction (C-DLR), and hybrid iterative reconstruction (HIR) in enhancing image quality and diagnostic performance for pediatric congenital heart disease (CHD) in CT angiography (CCTA). A total of 91 pediatric patients aged 1-10 years, suspected of having CHD, were consecutively enrolled for CCTA under free-breathing conditions. Reconstructions were performed using SR-DLR, C-DLR, and HIR algorithms. Objective metrics-standard deviation (SD), signal-to-noise ratio (SNR), and contrast-to-noise ratio (CNR)-were quantified. Two radiologists provided blinded subjective image quality evaluations. The full width at half maximum of lesions was significantly larger on SR-DLR (9.50 ± 6.44 mm) than on C-DLR (9.08 ± 6.23 mm; p < 0.001) and HIR (8.98 ± 6.37 mm; p < 0.001). SR-DLR exhibited superior performance with significantly reduced SD and increased SNR and CNR, particularly in the left ventricle, left atrium, and right ventricle regions (p < 0.05). Subjective evaluations favored SR-DLR over C-DLR and HIR (p < 0.05). The accuracy (99.12%), sensitivity (99.07%), and negative predictive value (85.71%) of SR-DLR were the highest, significantly exceeding those of C-DLR (+7.01%, +7.40%, and +45.71%) and HIR (+20.17%, +21.29%, and +65.71%), with statistically significant differences (p < 0.05 and p < 0.001). In the detection of atrial septal defects (ASDs) and ventricular septal defects (VSDs), SR-DLR demonstrated significantly higher sensitivity compared to C-DLR (+8.96% and +9.09%) and HIR (+20.90% and +36.36%). For multi-perforated ASDs and VSDs, SR-DLR's sensitivity reached 85.71% and 100%, far surpassing C-DLR and HIR. SR-DLR significantly reduces image noise and enhances resolution, improving the diagnostic visualization of CHD structures in pediatric patients. It outperforms existing algorithms in detecting small lesions, achieving diagnostic accuracy close to that of ultrasound. Question Pediatric cardiac computed tomography angiography (CCTA) often fails to adequately visualize intracardiac structures, creating diagnostic challenges for CHD, particularly complex multi-perforated atrioventricular defects. Findings SR-DLR markedly improves image quality and diagnostic accuracy, enabling detailed visualization and precise detection of small congenital lesions. Clinical relevance SR-DLR enhances the diagnostic confidence and accuracy of CCTA in pediatric CHD, reducing missed diagnoses and improving the characterization of complex intracardiac anomalies, thus supporting better clinical decision-making.
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