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Predicting progression-free survival in sarcoma using MRI-based automatic segmentation models and radiomics nomograms: a preliminary multicenter study.

Zhu N, Niu F, Fan S, Meng X, Hu Y, Han J, Wang Z

pubmed logopapersJul 1 2025
Some sarcomas are highly malignant, associated with high recurrence despite treatment. This multicenter study aimed to develop and validate a radiomics signature to estimate sarcoma progression-free survival (PFS). The study retrospectively enrolled 202 consecutive patients with pathologically diagnosed sarcoma, who had pre-treatment axial fat-suppressed T2-weighted images (FS-T2WI), and included them in the ROI-Net model for training. Among them, 120 patients were included in the radiomics analysis, all of whom had pre-treatment axial T1-weighted and transverse FS-T2WI images, and were randomly divided into a development group (n = 96) and a validation group (n = 24). In the development cohort, Least Absolute Shrinkage and Selection Operator (LASSO) Cox regression was used to develop the radiomics features for PFS prediction. By combining significant clinical features with radiomics features, a nomogram was constructed using Cox regression. The proposed ROI-Net framework achieved a Dice coefficient of 0.820 (0.791-0.848). The radiomics signature based on 21 features could distinguish high-risk patients with poor PFS. Univariate Cox analysis revealed that peritumoral edema, metastases, and the radiomics score were associated with poor PFS and were included in the construction of the nomogram. The Radiomics-T1WI-Clinical model exhibited the best performance, with AUC values of 0.947, 0.907, and 0.924 at 300 days, 600 days, and 900 days, respectively. The proposed ROI-Net framework demonstrated high consistency between its segmentation results and expert annotations. The radiomics features and the combined nomogram have the potential to aid in predicting PFS for patients with sarcoma.

Deep learning algorithm enables automated Cobb angle measurements with high accuracy.

Hayashi D, Regnard NE, Ventre J, Marty V, Clovis L, Lim L, Nitche N, Zhang Z, Tournier A, Ducarouge A, Kompel AJ, Tannoury C, Guermazi A

pubmed logopapersJul 1 2025
To determine the accuracy of automatic Cobb angle measurements by deep learning (DL) on full spine radiographs. Full spine radiographs of patients aged > 2 years were screened using the radiology reports to identify radiographs for performing Cobb angle measurements. Two senior musculoskeletal radiologists and one senior orthopedic surgeon independently annotated Cobb angles exceeding 7° indicating the angle location as either proximal thoracic (apices between T3 and T5), main thoracic (apices between T6 and T11), or thoraco-lumbar (apices between T12 and L4). If at least two readers agreed on the number of angles, location of the angles, and difference between comparable angles was < 8°, then the ground truth was defined as the mean of their measurements. Otherwise, the radiographs were reviewed by the three annotators in consensus. The DL software (BoneMetrics, Gleamer) was evaluated against the manual annotation in terms of mean absolute error (MAE). A total of 345 patients were included in the study (age 33 ± 24 years, 221 women): 179 pediatric patients (< 22 years old) and 166 adult patients (22 to 85 years old). Fifty-three cases were reviewed in consensus. The MAE of the DL algorithm for the main curvature was 2.6° (95% CI [2.0; 3.3]). For the subgroup of pediatric patients, the MAE was 1.9° (95% CI [1.6; 2.2]) versus 3.3° (95% CI [2.2; 4.8]) for adults. The DL algorithm predicted the Cobb angle of scoliotic patients with high accuracy.

Frequency-enhanced Multi-granularity Context Network for Efficient Vertebrae Segmentation

Jian Shi, Tianqi You, Pingping Zhang, Hongli Zhang, Rui Xu, Haojie Li

arxiv logopreprintJun 29 2025
Automated and accurate segmentation of individual vertebra in 3D CT and MRI images is essential for various clinical applications. Due to the limitations of current imaging techniques and the complexity of spinal structures, existing methods still struggle with reducing the impact of image blurring and distinguishing similar vertebrae. To alleviate these issues, we introduce a Frequency-enhanced Multi-granularity Context Network (FMC-Net) to improve the accuracy of vertebrae segmentation. Specifically, we first apply wavelet transform for lossless downsampling to reduce the feature distortion in blurred images. The decomposed high and low-frequency components are then processed separately. For the high-frequency components, we apply a High-frequency Feature Refinement (HFR) to amplify the prominence of key features and filter out noises, restoring fine-grained details in blurred images. For the low-frequency components, we use a Multi-granularity State Space Model (MG-SSM) to aggregate feature representations with different receptive fields, extracting spatially-varying contexts while capturing long-range dependencies with linear complexity. The utilization of multi-granularity contexts is essential for distinguishing similar vertebrae and improving segmentation accuracy. Extensive experiments demonstrate that our method outperforms state-of-the-art approaches on both CT and MRI vertebrae segmentation datasets. The source code is publicly available at https://github.com/anaanaa/FMCNet.

Automation in tibial implant loosening detection using deep-learning segmentation.

Magg C, Ter Wee MA, Buijs GS, Kievit AJ, Schafroth MU, Dobbe JGG, Streekstra GJ, Sánchez CI, Blankevoort L

pubmed logopapersJun 27 2025
Patients with recurrent complaints after total knee arthroplasty may suffer from aseptic implant loosening. Current imaging modalities do not quantify looseness of knee arthroplasty components. A recently developed and validated workflow quantifies the tibial component displacement relative to the bone from CT scans acquired under valgus and varus load. The 3D analysis approach includes segmentation and registration of the tibial component and bone. In the current approach, the semi-automatic segmentation requires user interaction, adding complexity to the analysis. The research question is whether the segmentation step can be fully automated while keeping outcomes indifferent. In this study, different deep-learning (DL) models for fully automatic segmentation are proposed and evaluated. For this, we employ three different datasets for model development (20 cadaveric CT pairs and 10 cadaveric CT scans) and evaluation (72 patient CT pairs). Based on the performance on the development dataset, the final model was selected, and its predictions replaced the semi-automatic segmentation in the current approach. Implant displacement was quantified by the rotation about the screw-axis, maximum total point motion, and mean target registration error. The displacement parameters of the proposed approach showed a statistically significant difference between fixed and loose samples in a cadaver dataset, as well as between asymptomatic and loose samples in a patient dataset, similar to the outcomes of the current approach. The methodological error calculated on a reproducibility dataset showed values that were not statistically significant different between the two approaches. The results of the proposed and current approaches showed excellent reliability for one and three operators on two datasets. The conclusion is that a full automation in knee implant displacement assessment is feasible by utilizing a DL-based segmentation model while maintaining the capability of distinguishing between fixed and loose implants.

Opportunistic Osteoporosis Diagnosis via Texture-Preserving Self-Supervision, Mixture of Experts and Multi-Task Integration

Jiaxing Huang, Heng Guo, Le Lu, Fan Yang, Minfeng Xu, Ge Yang, Wei Luo

arxiv logopreprintJun 25 2025
Osteoporosis, characterized by reduced bone mineral density (BMD) and compromised bone microstructure, increases fracture risk in aging populations. While dual-energy X-ray absorptiometry (DXA) is the clinical standard for BMD assessment, its limited accessibility hinders diagnosis in resource-limited regions. Opportunistic computed tomography (CT) analysis has emerged as a promising alternative for osteoporosis diagnosis using existing imaging data. Current approaches, however, face three limitations: (1) underutilization of unlabeled vertebral data, (2) systematic bias from device-specific DXA discrepancies, and (3) insufficient integration of clinical knowledge such as spatial BMD distribution patterns. To address these, we propose a unified deep learning framework with three innovations. First, a self-supervised learning method using radiomic representations to leverage unlabeled CT data and preserve bone texture. Second, a Mixture of Experts (MoE) architecture with learned gating mechanisms to enhance cross-device adaptability. Third, a multi-task learning framework integrating osteoporosis diagnosis, BMD regression, and vertebra location prediction. Validated across three clinical sites and an external hospital, our approach demonstrates superior generalizability and accuracy over existing methods for opportunistic osteoporosis screening and diagnosis.

Radiomic fingerprints for knee MR images assessment

Yaxi Chen, Simin Ni, Shaheer U. Saeed, Aleksandra Ivanova, Rikin Hargunani, Jie Huang, Chaozong Liu, Yipeng Hu

arxiv logopreprintJun 25 2025
Accurate interpretation of knee MRI scans relies on expert clinical judgment, often with high variability and limited scalability. Existing radiomic approaches use a fixed set of radiomic features (the signature), selected at the population level and applied uniformly to all patients. While interpretable, these signatures are often too constrained to represent individual pathological variations. As a result, conventional radiomic-based approaches are found to be limited in performance, compared with recent end-to-end deep learning (DL) alternatives without using interpretable radiomic features. We argue that the individual-agnostic nature in current radiomic selection is not central to its intepretability, but is responsible for the poor generalization in our application. Here, we propose a novel radiomic fingerprint framework, in which a radiomic feature set (the fingerprint) is dynamically constructed for each patient, selected by a DL model. Unlike the existing radiomic signatures, our fingerprints are derived on a per-patient basis by predicting the feature relevance in a large radiomic feature pool, and selecting only those that are predictive of clinical conditions for individual patients. The radiomic-selecting model is trained simultaneously with a low-dimensional (considered relatively explainable) logistic regression for downstream classification. We validate our methods across multiple diagnostic tasks including general knee abnormalities, anterior cruciate ligament (ACL) tears, and meniscus tears, demonstrating comparable or superior diagnostic accuracy relative to state-of-the-art end-to-end DL models. More importantly, we show that the interpretability inherent in our approach facilitates meaningful clinical insights and potential biomarker discovery, with detailed discussion, quantitative and qualitative analysis of real-world clinical cases to evidence these advantages.

Integrating handheld ultrasound in rheumatology: A review of benefits and drawbacks.

Sabido-Sauri R, Eder L, Emery P, Aydin SZ

pubmed logopapersJun 25 2025
Musculoskeletal ultrasound is a key tool in rheumatology for diagnosing and managing inflammatory arthritis. Traditional ultrasound systems, while effective, can be cumbersome and costly, limiting their use in many clinical settings. Handheld ultrasound (HHUS) devices, which are portable, affordable, and user-friendly, have emerged as a promising alternative. This review explores the role of HHUS in rheumatology, specifically evaluating its impact on diagnostic accuracy, ease of use, and utility in screening for inflammatory arthritis. The review also addresses key challenges, such as image quality, storage and data security, and the potential for integrating artificial intelligence to improve device performance. We compare HHUS devices to cart-based ultrasound machines, discuss their advantages and limitations, and examine the potential for widespread adoption. Our findings suggest that HHUS devices can effectively support musculoskeletal assessments and offer significant benefits in resource-limited settings. However, proper training, standardized protocols, and continued technological advancements are essential for optimizing their use in clinical practice.

Ultrasound Displacement Tracking Techniques for Post-Stroke Myofascial Shear Strain Quantification.

Ashikuzzaman M, Huang J, Bonwit S, Etemadimanesh A, Ghasemi A, Debs P, Nickl R, Enslein J, Fayad LM, Raghavan P, Bell MAL

pubmed logopapersJun 24 2025
Ultrasound shear strain is a potential biomarker of myofascial dysfunction. However, the quality of estimated shear strains can be impacted by differences in ultrasound displacement tracking techniques, potentially altering clinical conclusions surrounding myofascial pain. This work assesses the reliability of four displacement estimation algorithms under a novel clinical hypothesis that the shear strain between muscles on a stroke-affected (paretic) shoulder with myofascial pain is lower than that on the non-paretic side of the same patient. After initial validation with simulations, four approaches were evaluated with in vivo data acquired from ten research participants with myofascial post-stroke shoulder pain: (1) Search is a common window-based method that determines displacements by searching for maximum normalized cross-correlations within windowed data, whereas (2) OVERWIND-Search, (3) SOUL-Search, and (4) $L1$-SOUL-Search fine-tune the Search initial estimates by optimizing cost functions comprising data and regularization terms, utilizing $L1$-norm-based first-order regularization, $L2$-norm-based first- and second-order regularization, and $L1$-norm-based first- and second-order regularization, respectively. SOUL-Search and $L1$-SOUL-Search most accurately and reliably estimate shear strain relative to our clinical hypothesis, when validated with visual inspection of ultrasound cine loops and quantitative T1$\rho$ magnetic resonance imaging. In addition, $L1$-SOUL-Search produced the most reliable displacement tracking performance by generating lateral displacement images with smooth displacement gradients (measured as the mean and variance of displacement derivatives) and sharp edges (which enables distinction of shoulder muscle layers). Among the four investigated methods, $L1$-SOUL-Search emerged as the most suitable option to investigate myofascial pain and dysfunction, despite the drawback of slow runtimes, which can potentially be resolved with a deep learning solution. This work advances musculoskeletal health, ultrasound shear strain imaging, and related applications by establishing the foundation required to develop reliable image-based biomarkers for accurate diagnoses and treatments.

Evaluation of deep learning reconstruction in accelerated knee MRI: comparison of visual and diagnostic performance metrics.

Wen S, Xu Y, Yang G, Huang F, Zeng Z

pubmed logopapersJun 23 2025
To investigate the clinical value of deep learning reconstruction (DLR) in accelerated magnetic resonance imaging (MRI) of the knee and compare its visual quality and diagnostic performance metrics with conventional fast spin-echo T2-weighted imaging with fat suppression (FSE-T2WI-FS). This prospective study included 116 patients with knee injuries. All patients underwent both conventional FSE-T2WI-FS and DLR-accelerated FSE-T2WI-FS scans on a 1.5‑T MRI scanner. Two radiologists independently evaluated overall image quality, artifacts, and image sharpness using a 5-point Likert scale. The signal-to-noise ratio (SNR) and contrast-to-noise ratio (CNR) of lesion regions were measured. Subjective scores were compared using the Wilcoxon signed-rank test, SNR/CNR differences were analyzed via paired t tests, and inter-reader agreement was assessed using Cohen's kappa. The accelerated sequences with DLR achieved a 36 % reduction in total scan time compared to conventional sequences (p < 0.05), shortening acquisition from 9 min 50 s to 6 min 15 s. Moreover, DLR demonstrated superior artifact suppression and enhanced quantitative image quality, with significantly higher SNR and CNR (p < 0.001). Despite these improvements, diagnostic equivalence was maintained: No significant differences were observed in overall image quality, sharpness (p > 0.05), or lesion detection rates. Inter-reader agreement was good (κ> 0.75), further validating the clinical reliability of the DLR technique. Using DLR-accelerated FSE-T2WI-FS reduces scan time, suppresses artifacts, and improves quantitative image quality while maintaining diagnostic accuracy comparable to conventional sequences. This technology holds promise for optimizing clinical workflows in MRI of the knee.

Enabling Early Identification of Malignant Vertebral Compression Fractures via 2.5D Convolutional Neural Network Model with CT Image Analysis.

Huang C, Li E, Hu J, Huang Y, Wu Y, Wu B, Tang J, Yang L

pubmed logopapersJun 23 2025
This study employed a retrospective data analysis approach combined with model development and validation. The present study introduces a 2.5D convolutional neural network (CNN) model leveraging CT imaging to facilitate the early detection of malignant vertebral compression fractures (MVCFs), potentially reducing reliance on invasive biopsies. Vertebral histopathological biopsy is recognized as the gold standard for differentiating between osteoporotic and malignant vertebral compression fractures (VCFs). Nevertheless, its application is restricted due to its invasive nature and high cost, highlighting the necessity for alternative methods to identify MVCFs. The clinical, imaging, and pathological data of patients who underwent vertebral augmentation and biopsy at Institution 1 and Institution 2 were collected and analyzed. Based on the vertebral CT images of these patients, 2D, 2.5D, and 3D CNN models were developed to identify the patients with osteoporotic vertebral compression fractures (OVCF) and MVCF. To verify the clinical application value of the CNN model, two rounds of reader studies were performed. The 2.5D CNN model performed well, and its performance in identifying MVCF patients was significantly superior to that of the 2D and 3D CNN models. In the training dataset, the area under the receiver operating characteristic curve (AUC) of the 2.5D CNN model was 0.996 and an F1 score of 0.915. In the external cohort test, the AUC was 0.815 and an F1 score of 0.714. And clinicians' ability to identify MVCF patients has been enhanced by the 2.5D CNN model. With the assistance of the 2.5D CNN model, the AUC of senior clinicians was 0.882, and the F1 score was 0.774. For junior clinicians, the 2.5D CNN model-assisted AUC was 0.784 and the F1 score was 0.667. The development of our 2.5D CNN model marks a significant step towards non-invasive identification of MVCF patients,. The 2.5D CNN model may be a potential model to assist clinicians in better identifying MVCF patients.
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