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Pang C, Miao H, Zhang R, Liu Q, Lyu L

pubmed logopapersAug 12 2025
Accurate segmentation of thyroid nodules in ultrasound images is critical for clinical diagnosis but remains challenging due to low contrast and complex anatomical structures. Existing deep learning methods often rely solely on local nodule features, lacking anatomical prior knowledge of the thyroid region, which can result in misclassification of non-thyroid tissues, especially in low-quality scans. To address these issues, we propose a Spatial Prior-Guided Dual-Path Network that integrates a prior-aware encoder to model thyroid anatomical structures and a low-cost heterogeneous encoder to preserve fine-grained multi-scale features, enhancing both spatial detail and contextual awareness. To capture the diverse and irregular appearances of nodules, we design a CrossBlock module, which combines an efficient cross-attention mechanism with mixed-scale convolutional operations to enable global context modeling and local feature extraction. The network further employs a dual-decoder architecture, where one decoder learns thyroid region priors and the other focuses on accurate nodule segmentation. Gland-specific features are hierarchically refined and injected into the nodule decoder to enhance boundary delineation through anatomical guidance. Extensive experiments on the TN3K and MTNS datasets demonstrate that our method consistently outperforms state-of-the-art approaches, particularly in boundary precision and localization accuracy, offering practical value for preoperative planning and clinical decision-making.

Zhang M, Liu A, Meng X, Wang Y, Yu J, Liu H, Sun Y, Xu L, Song X, Zhang J, Sun L, Lin J, Wu A, Wang X, Chai N, Li L

pubmed logopapersAug 12 2025
Although surface-enhanced Raman scattering (SERS) spectroscopy is applied in biomedicine deeply, the design of new substrates for wider detection is still in demand. Crystalline-amorphous CoSe<sub>2</sub>/CoS<sub>2</sub> heterojunction is synthesized, with high SERS performance and stability, composed of orthorhombic (o-CoSe<sub>2</sub>) and amorphous CoS<sub>2</sub> (a-CoS<sub>2</sub>). By adjusting feed ratio, the proportion of a-CoS<sub>2</sub> to o-CoSe<sub>2</sub> is regulated, where CoSe<sub>2</sub>/CoS<sub>2</sub>-S50 with a 1:1 ratio demonstrates the best SERS performance due to the balance of two components. It is confirmed through experimental and simulation methods that o-CoSe<sub>2</sub> and a-CoS<sub>2</sub> have unique contribution, respectively: a-CoS<sub>2</sub> has rich vacancies and a higher density of active sites, while o-CoSe<sub>2</sub> further enriches vacancies, enhances electron delocalization and charge transfer (CT) capabilities, and reduces bandgap. Besides, CoSe<sub>2</sub>/CoS<sub>2</sub>-S50 achieves not only SERS detection of two common esophageal tumor cells (KYSE and TE) and healthy oral epithelial cells (het-1A), but also the discrimination with high sensitivity, specificity, and accuracy via machine learning (ML) analysis.

Cantürk A, Yarol RC, Tasak AS, Gülmez H, Kadirli K, Bişgin T, Manoğlu B, Sökmen S, Öztop İ, Görken Bilkay İ, Sağol Ö, Sarıoğlu S, Barlık F

pubmed logopapersAug 12 2025
Neoadjuvant chemoradiotherapy (CRT) is known to increase sphincter preservation rates and decrease the risk of postoperative recurrence in patients with locally advanced rectal tumors. However, the response to CRT in patients with locally advanced rectal cancer (LARC) varies significantly. The objective of this study was to compare the performance of models based on radiomics features of the tumor alone, the mesorectum alone, and a combination of both in predicting tumor response to neoadjuvant CRT in LARC. This retrospective study included 101 patients with LARC. Patients were categorized as responders (modified Ryan score 0-1) and non-responders (modified Ryan score 2-3). Pre-CRT magnetic resonance imaging evaluations included tumor-T2 weighted imaging (T2WI), tumor-diffusion weighted imaging (DWI), tumor-apparent diffusion coefficient (ADC) maps, and mesorectum-T2WI. The first radiologist segmented the tumor and mesorectum from T2-weighted images, and the second radiologist performed tumor segmentation using DWI and ADC maps. Feature reproducibility was assessed by calculating the intraclass correlation coefficient (ICC) using a two-way mixed-effects model with absolute agreement for single measurements [ICC(3,1)]. Radiomic features with ICC values <0.60 were excluded from further analysis. Subsequently, the least absolute shrinkage and selection operator method was applied to select the most relevant radiomic features. The top five features with the highest coefficients were selected for model training. To address class imbalance between groups, the synthetic minority over-sampling technique was applied exclusively to the training folds during cross-validation. Thereafter, classification learner models were developed using 10-fold cross-validation to achieve the highest performance. The performance metrics of the final models, including accuracy, precision, recall, F1-score, and area under the receiver operating characteristic curve (AUC), were calculated to evaluate the classification performance. Among the 101 patients, 36 were classified as responders and 65 as non-responders. A total of 25 radiomic features from the tumor and 20 from the mesorectum were found to be statistically significant (<i>P</i> < 0.05). The AUC values for predicting treatment response were 0.781 for the tumor-only model (random forest), 0.726 for the mesorectum-only model (logistic regression), and 0.837 for the combined model (logistic regression). Radiomic features derived from both the tumor and mesorectum demonstrated complementary prognostic value in predicting treatment response. The inclusion of mesorectal features substantially improved model performance, with the combined model achieving the highest AUC value. These findings highlight the added predictive contribution of the mesorectum as a key peritumoral structure in radiomics-based assessment. Currently, the response of locally advanced rectal tumors to neoadjuvant therapy cannot be reliably predicted using conventional methods. Recently, the significance of the mesorectum in predicting treatment response has gained attention, although the number of studies focusing on this area remains limited. In our study, we performed radiomics analyses of both the tumor tissue and the mesorectum to predict neoadjuvant treatment response.

Hoffmann T, Teichgräber U, Brüheim LB, Lassen-Schmidt B, Renz D, Weise T, Krämer M, Oelzner P, Böttcher J, Güttler F, Wolf G, Pfeil A

pubmed logopapersAug 12 2025
Interstitial lung disease (ILD) is a common and serious organ manifestation in patients with connective tissue disease (CTD), but it is uncertain whether there is a difference in ILD between symptomatic and asymptomatic patients. Therefore, we conducted a study to evaluate differences in the extent of ILD based on radiological findings between symptomatic/asymptomatic patients, using an artificial intelligence (AI)-based quantification of pulmonary high-resolution computed tomography (AIpqHRCT). Within the study, 67 cross-sectional HRCT datasets and clinical data (including pulmonary function test) of consecutively patients (mean age: 57.1 ± 14.7 years, woman n = 45; 67.2%) with both, initial diagnosis of CTD, with systemic sclerosis being the most frequent (n = 21, 31.3%), and ILD (all without immunosuppressive therapy), were analysed using AIqpHRCT. 25.4% (n = 17) of the patients with ILD at initial diagnosis of CTD had no pulmonary symptoms. Regarding the baseline characteristics (age, gender, disease), there were no significant difference between the symptomatic and asymptomatic group. The pulmonary function test (PFT) revealed the following mean values (%predicted) in the symptomatic and asymptomatic group, respectively: Forced vital capacity (FVC) 69.4 ± 17.4% versus 86.1 ± 15.8% (p = 0.001), and diffusing capacity of the lung for carbon monoxide (DLCO) 49.7 ± 17.9% versus 60.0 ± 15.8% (p = 0.043). AIqpHRCT data showed a significant higher amount of high attenuated volume (HAV) (14.8 ± 11.0% versus 8.9 ± 3.9%; p = 0.021) and reticulations (5.4 ± 8.7% versus 1.4 ± 1.5%; p = 0.035) in symptomatic patients. A quarter of patients with ILD at the time of initial CTD diagnosis had no pulmonary symptoms, showing DLCO were reduced in both groups. Also, AIqpHRCT demonstrated clinically relevant ILD in asymptomatic patients. These results underline the importance of an early risk adapted screening for ILD also in asymptomatic CTD patients, as ILD is associated with increased mortality.

Ye B, Sun Y, Chen G, Wang B, Meng H, Shan L

pubmed logopapersAug 12 2025
Cervical 2 pedicle screw (C2PS) fixation is widely used in posterior cervical surgery but carries risks of vertebral artery injury (VAI), a rare yet severe complication. This study aimed to identify risk factors for VAI during C2PS placement and develop a machine learning (ML)-based predictive model to enhance preoperative risk assessment. Clinical and radiological data from 280 patients undergoing head and neck CT angiography were retrospectively analyzed. Three-dimensional reconstructed images simulated C2PS placement, classifying patients into injury (n = 98) and non-injury (n = 182) groups. Fifteen variables, including characteristic of patients and anatomic variables were evaluated. Eight ML algorithms were trained (70% training cohort) and validated (30% validation cohort). Model performance was assessed using AUC, sensitivity, specificity, and SHAP (SHapley Additive exPlanations) for interpretability. Six key risk factors were identified: pedicle diameter, high-riding vertebral artery (HRVA), intra-axial vertebral artery (IAVA), vertebral artery diameter (VAD), distance between the transverse foramen and the posterior end of the vertebral body (TFPEVB) and distance between the vertebral artery and the vertebral body (VAVB). The neural network model (NNet) demonstrated optimal predictive performance, achieving AUCs of 0.929 (training) and 0.936 (validation). SHAP analysis confirmed these variables as primary contributors to VAI risk. This study established an ML-driven predictive model for VAI during C2PS placement, highlighting six critical anatomical and radiological risk factors. Integrating this model into clinical workflows may optimize preoperative planning, reduce complications, and improve surgical outcomes. External validation in multicenter cohorts is warranted to enhance generalizability.

Yang J, Cai D, Liu J, Zhuang Z, Zhao Y, Wang FA, Li C, Hu C, Gai B, Chen Y, Li Y, Wang L, Gao F, Wu X

pubmed logopapersAug 12 2025
Accurate risk stratification is crucial for determining the optimal treatment plan for patients with colorectal cancer (CRC). However, existing deep learning models perform poorly in the preoperative diagnosis of CRC and exhibit limited generalizability, primarily due to insufficient annotated data. To address these issues, CRCFound, a self-supervised learning-based CT image foundation model for CRC is proposed. After pretraining on 5137 unlabeled CRC CT images, CRCFound can learn universal feature representations and provide efficient and reliable adaptability for various clinical applications. Comprehensive benchmark tests are conducted on six different diagnostic tasks and two prognosis tasks to validate the performance of the pretrained model. Experimental results demonstrate that CRCFound can easily transfer to most CRC tasks and exhibit outstanding performance and generalization ability. Overall, CRCFound can solve the problem of insufficient annotated data and perform well in a wide range of downstream tasks of CRC, making it a promising solution for accurate diagnosis and personalized treatment of CRC patients.

Miruna-Alexandra Gafencu, Reem Shaban, Yordanka Velikova, Mohammad Farid Azampour, Nassir Navab

arxiv logopreprintAug 12 2025
Ultrasound (US) imaging is increasingly used in spinal procedures due to its real-time, radiation-free capabilities; however, its effectiveness is hindered by shadowing artifacts that obscure deeper tissue structures. Traditional approaches, such as CT-to-US registration, incorporate anatomical information from preoperative CT scans to guide interventions, but they are limited by complex registration requirements, differences in spine curvature, and the need for recent CT imaging. Recent shape completion methods can offer an alternative by reconstructing spinal structures in US data, while being pretrained on large set of publicly available CT scans. However, these approaches are typically offline and have limited reproducibility. In this work, we introduce a novel integrated system that combines robotic ultrasound with real-time shape completion to enhance spinal visualization. Our robotic platform autonomously acquires US sweeps of the lumbar spine, extracts vertebral surfaces from ultrasound, and reconstructs the complete anatomy using a deep learning-based shape completion network. This framework provides interactive, real-time visualization with the capability to autonomously repeat scans and can enable navigation to target locations. This can contribute to better consistency, reproducibility, and understanding of the underlying anatomy. We validate our approach through quantitative experiments assessing shape completion accuracy and evaluations of multiple spine acquisition protocols on a phantom setup. Additionally, we present qualitative results of the visualization on a volunteer scan.

Xin Wang, Yin Guo, Jiamin Xia, Kaiyu Zhang, Niranjan Balu, Mahmud Mossa-Basha, Linda Shapiro, Chun Yuan

arxiv logopreprintAug 12 2025
Most prior unsupervised domain adaptation approaches for medical image segmentation are narrowly tailored to either the source-accessible setting, where adaptation is guided by source-target alignment, or the source-free setting, which typically resorts to implicit supervision mechanisms such as pseudo-labeling and model distillation. This substantial divergence in methodological designs between the two settings reveals an inherent flaw: the lack of an explicit, structured construction of anatomical knowledge that naturally generalizes across domains and settings. To bridge this longstanding divide, we introduce a unified, semantically grounded framework that supports both source-accessible and source-free adaptation. Fundamentally distinct from all prior works, our framework's adaptability emerges naturally as a direct consequence of the model architecture, without the need for any handcrafted adaptation strategies. Specifically, our model learns a domain-agnostic probabilistic manifold as a global space of anatomical regularities, mirroring how humans establish visual understanding. Thus, the structural content in each image can be interpreted as a canonical anatomy retrieved from the manifold and a spatial transformation capturing individual-specific geometry. This disentangled, interpretable formulation enables semantically meaningful prediction with intrinsic adaptability. Extensive experiments on challenging cardiac and abdominal datasets show that our framework achieves state-of-the-art results in both settings, with source-free performance closely approaching its source-accessible counterpart, a level of consistency rarely observed in prior works. Beyond quantitative improvement, we demonstrate strong interpretability of the proposed framework via manifold traversal for smooth shape manipulation.

Joseph Paillard, Antoine Collas, Denis A. Engemann, Bertrand Thirion

arxiv logopreprintAug 12 2025
Recent advances in machine learning have greatly expanded the repertoire of predictive methods for medical imaging. However, the interpretability of complex models remains a challenge, which limits their utility in medical applications. Recently, model-agnostic methods have been proposed to measure conditional variable importance and accommodate complex non-linear models. However, they often lack power when dealing with highly correlated data, a common problem in medical imaging. We introduce Hierarchical-CPI, a model-agnostic variable importance measure that frames the inference problem as the discovery of groups of variables that are jointly predictive of the outcome. By exploring subgroups along a hierarchical tree, it remains computationally tractable, yet also enjoys explicit family-wise error rate control. Moreover, we address the issue of vanishing conditional importance under high correlation with a tree-based importance allocation mechanism. We benchmarked Hierarchical-CPI against state-of-the-art variable importance methods. Its effectiveness is demonstrated in two neuroimaging datasets: classifying dementia diagnoses from MRI data (ADNI dataset) and analyzing the Berger effect on EEG data (TDBRAIN dataset), identifying biologically plausible variables.

Yimeng Geng, Mingyang Zhao, Fan Xu, Guanglin Cao, Gaofeng Meng, Hongbin Liu

arxiv logopreprintAug 12 2025
Ultrasound deformable registration estimates spatial transformations between pairs of deformed ultrasound images, which is crucial for capturing biomechanical properties and enhancing diagnostic accuracy in diseases such as thyroid nodules and breast cancer. However, ultrasound deformable registration remains highly challenging, especially under large deformation. The inherently low contrast, heavy noise and ambiguous tissue boundaries in ultrasound images severely hinder reliable feature extraction and correspondence matching. Existing methods often suffer from poor anatomical alignment and lack physical interpretability. To address the problem, we propose PADReg, a physics-aware deformable registration framework guided by contact force. PADReg leverages synchronized contact force measured by robotic ultrasound systems as a physical prior to constrain the registration. Specifically, instead of directly predicting deformation fields, we first construct a pixel-wise stiffness map utilizing the multi-modal information from contact force and ultrasound images. The stiffness map is then combined with force data to estimate a dense deformation field, through a lightweight physics-aware module inspired by Hooke's law. This design enables PADReg to achieve physically plausible registration with better anatomical alignment than previous methods relying solely on image similarity. Experiments on in-vivo datasets demonstrate that it attains a HD95 of 12.90, which is 21.34\% better than state-of-the-art methods. The source code is available at https://github.com/evelynskip/PADReg.
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