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"Advances in biomarker discovery and diagnostics for alzheimer's disease".

Bhatia V, Chandel A, Minhas Y, Kushawaha SK

pubmed logopapersJun 1 2025
Alzheimer's disease (AD) is a progressive neurodegenerative disorder characterized by intracellular neurofibrillary tangles with tau protein and extracellular β-amyloid plaques. Early and accurate diagnosis is crucial for effective treatment and management. The purpose of this review is to investigate new technologies that improve diagnostic accuracy while looking at the current diagnostic criteria for AD, such as clinical evaluations, cognitive testing, and biomarker-based techniques. A thorough review of the literature was done in order to assess both conventional and contemporary diagnostic methods. Multimodal strategies integrating clinical, imaging, and biochemical evaluations were emphasised. The promise of current developments in biomarker discovery was also examined, including mass spectrometry and artificial intelligence. Current diagnostic approaches include cerebrospinal fluid (CSF) biomarkers, imaging tools (MRI, PET), cognitive tests, and new blood-based markers. Integrating these technologies into multimodal diagnostic procedures enhances diagnostic accuracy and distinguishes dementia from other conditions. New technologies that hold promise for improving biomarker identification and diagnostic reliability include mass spectrometry and artificial intelligence. Advancements in AD diagnostics underscore the need for accessible, minimally invasive, and cost-effective techniques to facilitate early detection and intervention. The integration of novel technologies with traditional methods may significantly enhance the accuracy and feasibility of AD diagnosis.

Impact of contrast enhancement phase on CT-based radiomics analysis for predicting post-surgical recurrence in renal cell carcinoma.

Khene ZE, Bhanvadia R, Tachibana I, Sharma P, Trevino I, Graber W, Bertail T, Fleury R, Acosta O, De Crevoisier R, Bensalah K, Lotan Y, Margulis V

pubmed logopapersJun 1 2025
To investigate the effect of CT enhancement phase on radiomics features for predicting post-surgical recurrence of clear cell renal cell carcinoma (ccRCC). This retrospective study included 144 patients who underwent radical or partial nephrectomy for ccRCC. Preoperative multiphase abdominal CT scans (non-contrast, corticomedullary, and nephrographic phases) were obtained for each patient. Automated segmentation of renal masses was performed using the nnU-Net framework. Radiomics signatures (RS) were developed for each phase using ensembles of machine learning-based models (Random Survival Forests [RSF], Survival Support Vector Machines [S-SVM], and Extreme Gradient Boosting [XGBoost]) with and without feature selection. Feature selection was performed using Affinity Propagation Clustering. The primary endpoint was disease-free survival, assessed by concordance index (C-index). The study included 144 patients. Radical and partial nephrectomies were performed in 81% and 19% of patients, respectively, with 81% of tumors classified as high grade. Disease recurrence occurred in 74 patients (51%). A total of 1,316 radiomics features were extracted per phase per patient. Without feature selection, C-index values for RSF, S-SVM, XGBoost, and Penalized Cox models ranged from 0.43 to 0.61 across phases. With Affinity Propagation feature selection, C-index values improved to 0.51-0.74, with the corticomedullary phase achieving the highest performance (C-index up to 0.74). The results of our study indicate that radiomics analysis of corticomedullary phase contrast-enhanced CT images may provide valuable predictive insight into recurrence risk for non-metastatic ccRCC following surgical resection. However, the lack of external validation is a limitation, and further studies are needed to confirm these findings in independent cohorts.

Human-AI collaboration for ultrasound diagnosis of thyroid nodules: a clinical trial.

Edström AB, Makouei F, Wennervaldt K, Lomholt AF, Kaltoft M, Melchiors J, Hvilsom GB, Bech M, Tolsgaard M, Todsen T

pubmed logopapersJun 1 2025
This clinical trial examined how the articifial intelligence (AI)-based diagnostics system S-Detect for Thyroid influences the ultrasound diagnostic work-up of thyroid ultrasound (US) performed by different US users in clinical practice and how different US users influences the diagnostic accuracy of S-Detect. We conducted a clinical trial with 20 participants, including medical students, US novice physicians, and US experienced physicians. Five patients with thyroid nodules (one malignant and four benign) volunteered to undergo a thyroid US scan performed by all 20 participants using the same US systems with S-Detect installed. Participants performed a focused thyroid US on each patient case and made a nodule classification according to the European Thyroid Imaging Reporting And Data System (EU-TIRADS). They then performed a S-Detect analysis of the same nodule and were asked to re-evaluate their EU-TIRADS reporting. From the EU-TIRADS assessments by participants, we derived a biopsy recommendation outcome of whether fine needle aspiration biopsy (FNAB) was recommended. The mean diagnostic accuracy for S-Detect was 71.3% (range 40-100%) among all participants, with no significant difference between the groups (p = 0.31). The accuracy of our biopsy recommendation outcome was 69.8% before and 69.2% after AI for all participants (p = 0.75). In this trial, we did not find S-Detect to improve the thyroid diagnostic work-up in clinical practice among novice and intermediate ultrasound operators. However, the operator had a substantial impact on the AI-generated ultrasound diagnosis, with a variation in diagnostic accuracy from 40 to 100%, despite the same patients and ultrasound machines being used in the trial.

Developing approaches to incorporate donor-lung computed tomography images into machine learning models to predict severe primary graft dysfunction after lung transplantation.

Ma W, Oh I, Luo Y, Kumar S, Gupta A, Lai AM, Puri V, Kreisel D, Gelman AE, Nava R, Witt CA, Byers DE, Halverson L, Vazquez-Guillamet R, Payne PRO, Sotiras A, Lu H, Niazi K, Gurcan MN, Hachem RR, Michelson AP

pubmed logopapersJun 1 2025
Primary graft dysfunction (PGD) is a common complication after lung transplantation associated with poor outcomes. Although risk factors have been identified, the complex interactions between clinical variables affecting PGD risk are not well understood, which can complicate decisions about donor-lung acceptance. Previously, we developed a machine learning model to predict grade 3 PGD using donor and recipient electronic health record data, but it lacked granular information from donor-lung computed tomography (CT) scans, which are routinely assessed during offer review. In this study, we used a gated approach to determine optimal methods for analyzing donor-lung CT scans among patients receiving first-time, bilateral lung transplants at a single center over 10 years. We assessed 4 computer vision approaches and fused the best with electronic health record data at 3 points in the machine learning process. A total of 160 patients had donor-lung CT scans for analysis. The best imaging-only approach employed a 3D ResNet model, yielding median (interquartile range) areas under the receiver operating characteristic and precision-recall curves of 0.63 (0.49-0.72) and 0.48 (0.35-0.6), respectively. Combining imaging with clinical data using late fusion provided the highest performance, with median areas under the receiver operating characteristic and precision-recall curves of 0.74 (0.59-0.85) and 0.61 (0.47-0.72), respectively.

Diagnosis of Thyroid Nodule Malignancy Using Peritumoral Region and Artificial Intelligence: Results of Hand-Crafted, Deep Radiomics Features and Radiologists' Assessment in Multicenter Cohorts.

Abbasian Ardakani A, Mohammadi A, Yeong CH, Ng WL, Ng AH, Tangaraju KN, Behestani S, Mirza-Aghazadeh-Attari M, Suresh R, Acharya UR

pubmed logopapersJun 1 2025
To develop, test, and externally validate a hybrid artificial intelligence (AI) model based on hand-crafted and deep radiomics features extracted from B-mode ultrasound images in differentiating benign and malignant thyroid nodules compared to senior and junior radiologists. A total of 1602 thyroid nodules from four centers across two countries (Iran and Malaysia) were included for the development and validation of AI models. From each original and expanded contour, which included the peritumoral region, 2060 handcrafted and 1024 deep radiomics features were extracted to assess the effectiveness of the peritumoral region in the AI diagnosis profile. The performance of four algorithms, namely, support vector machine with linear (SVM_lin) and radial basis function (SVM_RBF) kernels, logistic regression, and K-nearest neighbor, was evaluated. The diagnostic performance of the proposed AI model was compared with two radiologists based on the American Thyroid Association (ATA) and the Thyroid Imaging Reporting & Data System (TI-RADS™) guidelines to show the model's applicability in clinical routines. Thirty-five hand-crafted and 36 deep radiomics features were considered for model development. In the training step, SVM_RBF and SVM_lin showed the best results when rectangular contours 40% greater than the original contours were used for both hand-crafted and deep features. Ensemble-learning with SVM_RBF and SVM_lin obtained AUC of 0.954, 0.949, 0.932, and 0.921 in internal and external validations of the Iran cohort and Malaysia cohorts 1 and 2, respectively, and outperformed both radiologists. The proposed AI model trained on nodule+the peripheral region performed optimally in external validations and outperformed the radiologists using the ATA and TI-RADS guidelines.

Retaking assessment system based on the inspiratory state of chest X-ray image.

Matsubara N, Teramoto A, Takei M, Kitoh Y, Kawakami S

pubmed logopapersJun 1 2025
When taking chest X-rays, the patient is encouraged to take maximum inspiration and the radiological technologist takes the images at the appropriate time. If the image is not taken at maximum inspiration, retaking of the image is required. However, there is variation in the judgment of whether retaking is necessary between the operators. Therefore, we considered that it might be possible to reduce variation in judgment by developing a retaking assessment system that evaluates whether retaking is necessary using a convolutional neural network (CNN). To train the CNN, the input chest X-ray image and the corresponding correct label indicating whether retaking is necessary are required. However, chest X-ray images cannot distinguish whether inspiration is sufficient and does not need to be retaken, or insufficient and retaking is required. Therefore, we generated input images and labels from dynamic digital radiography (DDR) and conducted the training. Verification using 18 dynamic chest X-ray cases (5400 images) and 48 actual chest X-ray cases (96 images) showed that the VGG16-based architecture achieved an assessment accuracy of 82.3% even for actual chest X-ray images. Therefore, if the proposed method is used in hospitals, it could possibly reduce the variability in judgment between operators.

Regional Cerebral Atrophy Contributes to Personalized Survival Prediction in Amyotrophic Lateral Sclerosis: A Multicentre, Machine Learning, Deformation-Based Morphometry Study.

Lajoie I, Kalra S, Dadar M

pubmed logopapersJun 1 2025
Accurate personalized survival prediction in amyotrophic lateral sclerosis is essential for effective patient care planning. This study investigates whether grey and white matter changes measured by magnetic resonance imaging can improve individual survival predictions. We analyzed data from 178 patients with amyotrophic lateral sclerosis and 166 healthy controls in the Canadian Amyotrophic Lateral Sclerosis Neuroimaging Consortium study. A voxel-wise linear mixed-effects model assessed disease-related and survival-related atrophy detected through deformation-based morphometry, controlling for age, sex, and scanner variations. Additional linear mixed-effects models explored associations between regional imaging and clinical measurements, and their associations with time to the composite outcome of death, tracheostomy, or permanent assisted ventilation. We evaluated whether incorporating imaging features alongside clinical data could improve the performance of an individual survival distribution model. Deformation-based morphometry uncovered distinct voxel-wise atrophy patterns linked to disease progression and survival, with many of these regional atrophies significantly associated with clinical manifestations of the disease. By integrating regional imaging features with clinical data, we observed a substantial enhancement in the performance of survival models across key metrics. Our analysis identified specific brain regions, such as the corpus callosum, rostral middle frontal gyrus, and thalamus, where atrophy predicted an increased risk of mortality. This study suggests that brain atrophy patterns measured by deformation-based morphometry provide valuable insights beyond clinical assessments for prognosis. It offers a more comprehensive approach to prognosis and highlights brain regions involved in disease progression and survival, potentially leading to a better understanding of amyotrophic lateral sclerosis. ANN NEUROL 2025;97:1144-1157.

DKCN-Net: Deep kronecker convolutional neural network-based lung disease detection with federated learning.

Meda A, Nelson L, Jagdish M

pubmed logopapersJun 1 2025
In the healthcare field, lung disease detection techniques based on deep learning (DL) are widely used. However, achieving high stability while maintaining privacy remains a challenge. To address this, this research employs Federated Learning (FL), enabling doctors to train models without sharing patient data with unauthorized parties, preserving privacy in local models. The study introduces the Deep Kronecker Convolutional Neural Network (DKCN-Net) for lung disease detection. Input Computed Tomography (CT) images are sourced from the LIDC-IDRI database and denoised using the Adaptive Gaussian Filter (AGF). After that, the Lung lobe and nodule segmentation are performed using Deep Fuzzy Clustering (DFC) and a 3-Dimensional Fully Convolutional Neural Network (3D-FCN). During feature extraction, various features, including statistical, Convolutional Neural Networks (CNN), and Gray-Level Co-Occurrence Matrix (GLCM), are obtained. Lung diseases are then detected using DKCN-Net, which combines the Deep Kronecker Neural Network (DKN) and Parallel Convolutional Neural Network (PCNN). The DKCN-Net achieves an accuracy of 92.18 %, a loss of 7.82 %, a Mean Squared Error (MSE) of 0.858, a True Positive Rate (TPR) of 92.99 %, and a True Negative Rate (TNR) of 92.19 %, with a processing time of 50 s per timestamp.

Preoperative blood and CT-image nutritional indicators in short-term outcomes and machine learning survival framework of intrahepatic cholangiocarcinoma.

Wang M, Xie X, Lin J, Shen Z, Zou E, Wang Y, Liang X, Chen G, Yu H

pubmed logopapersJun 1 2025
Intrahepatic cholangiocarcinoma (iCCA) is aggressive with limited treatment and poor prognosis. Preoperative nutritional status assessment is crucial for predicting outcomes in patients. This study aimed to compare the predictive capabilities of preoperative blood like albumin-bilirubin (ALBI), controlling nutritional status (CONUT), prognostic nutritional index (PNI) and CT-imaging nutritional indicators like skeletal muscle index (SMI), visceral adipose tissue (VAT), subcutaneous adipose tissue (SAT), visceral to subcutaneous adipose tissue ratio (VSR) in iCCA patients undergoing curative hepatectomy. 290 iCCA patients from two centers were studied. Preoperative blood and CT-imaging nutritional indicators were evaluated. Short-term outcomes like complications, early recurrence (ER) and very early recurrence (VER), and overall survival (OS) as long-term outcome were assessed. Six machine learning (ML) models, including Gradient Boosting (GB) survival analysis, were developed to predict OS. Preoperative blood nutritional indicators significantly associated with postoperative complications. CT-imaging nutritional indicators show insignificant associations with short-term outcomes. All preoperative nutritional indicators were not effective in predicting early tumor recurrence. For long-term outcomes, ALBI, CONUT, PNI, SMI, and VSR were significantly associated with OS. Six ML survival models demonstrated strong and stable performance. GB model showed the best predictive performance (C-index: 0.755 in training cohorts, 0.714 in validation cohorts). Time-dependent ROC, calibration, and decision curve analysis confirmed its clinical value. Preoperative ALBI, CONUT, and PNI scores significantly correlated with complications but not ER. Four Image Nutritional Indicators were ineffective in evaluating short-term outcomes. Six ML models were developed based on nutritional and clinicopathological variables to predict iCCA prognosis.

Managing class imbalance in the training of a large language model to predict patient selection for total knee arthroplasty: Results from the Artificial intelligence to Revolutionise the patient Care pathway in Hip and knEe aRthroplastY (ARCHERY) project.

Farrow L, Anderson L, Zhong M

pubmed logopapersJun 1 2025
This study set out to test the efficacy of different techniques used to manage to class imbalance, a type of data bias, in application of a large language model (LLM) to predict patient selection for total knee arthroplasty (TKA). This study utilised data from the Artificial Intelligence to Revolutionise the Patient Care Pathway in Hip and Knee Arthroplasty (ARCHERY) project (ISRCTN18398037). Data included the pre-operative radiology reports of patients referred to secondary care for knee-related complaints from within the North of Scotland. A clinically based LLM (GatorTron) was trained regarding prediction of selection for TKA. Three methods for managing class imbalance were assessed: a standard model, use of class weighting, and majority class undersampling. A total of 7707 individual knee radiology reports were included (dated from 2015 to 2022). The mean text length was 74 words (range 26-275). Only 910/7707 (11.8%) patients underwent TKA surgery (the designated 'minority class'). Class weighting technique performed better for minority class discrimination and calibration compared with the other two techniques (Recall 0.61/AUROC 0.73 for class weighting compared with 0.54/0.70 and 0.59/0.72 for the standard model and majority class undersampling, respectively. There was also significant data loss for majority class undersampling when compared with class-weighting. Use of class-weighting appears to provide the optimal method of training a an LLM to perform analytical tasks on free-text clinical information in the face of significant data bias ('class imbalance'). Such knowledge is an important consideration in the development of high-performance clinical AI models within Trauma and Orthopaedics.
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