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Zero-shot segmentation of spinal vertebrae with metastatic lesions: an analysis of Meta's Segment Anything Model 2 and factors affecting learning free segmentation.

Khazanchi R, Govind S, Jain R, Du R, Dahdaleh NS, Ahuja CS, El Tecle N

pubmed logopapersJul 1 2025
Accurate vertebral segmentation is an important step in imaging analysis pipelines for diagnosis and subsequent treatment of spinal metastases. Segmenting these metastases is especially challenging given their radiological heterogeneity. Conventional approaches for segmenting vertebrae have included manual review or deep learning; however, manual review is time-intensive with interrater reliability issues, while deep learning requires large datasets to build. The rise of generative AI, notably tools such as Meta's Segment Anything Model 2 (SAM 2), holds promise in its ability to rapidly generate segmentations of any image without pretraining (zero-shot). The authors of this study aimed to assess the ability of SAM 2 to segment vertebrae with metastases. A publicly available set of spinal CT scans from The Cancer Imaging Archive was used, which included patient sex, BMI, vertebral locations, types of metastatic lesion (lytic, blastic, or mixed), and primary cancer type. Ground-truth segmentations for each vertebra, derived by neuroradiologists, were further extracted from the dataset. SAM 2 then produced segmentations for each vertebral slice without any training data, all of which were compared to gold standard segmentations using the Dice similarity coefficient (DSC). Relative performance differences were assessed across clinical subgroups using standard statistical techniques. Imaging data were extracted for 55 patients and 779 unique thoracolumbar vertebrae, 167 of which had metastatic tumor involvement. Across these vertebrae, SAM 2 had a mean volumetric DSC of 0.833 ± 0.053. SAM 2 performed significantly worse on thoracic vertebrae relative to lumbar vertebrae, female patients relative to male patients, and obese patients relative to non-obese patients. These results demonstrate that general-purpose segmentation models like SAM 2 can provide reasonable vertebral segmentation accuracy with no pretraining, with efficacy comparable to previously published trained models. Future research should include optimizations of spine segmentation models for vertebral location and patient body habitus, as well as for variations in imaging quality approaches.

Intermuscular adipose tissue and lean muscle mass assessed with MRI in people with chronic back pain in Germany: a retrospective observational study.

Ziegelmayer S, Häntze H, Mertens C, Busch F, Lemke T, Kather JN, Truhn D, Kim SH, Wiestler B, Graf M, Kader A, Bamberg F, Schlett CL, Weiss JB, Schulz-Menger J, Ringhof S, Can E, Pischon T, Niendorf T, Lammert J, Schulze M, Keil T, Peters A, Hadamitzky M, Makowski MR, Adams L, Bressem K

pubmed logopapersJul 1 2025
Chronic back pain (CBP) affects over 80 million people in Europe, contributing to substantial healthcare costs and disability. Understanding modifiable risk factors, such as muscle composition, may aid in prevention and treatment. This study investigates the association between lean muscle mass (LMM) and intermuscular adipose tissue (InterMAT) with CBP using noninvasive whole-body magnetic resonance imaging (MRI). This cross-sectional analysis used whole-body MRI data from 30,868 participants in the German National Cohort (NAKO), collected between 1 May 2014 and 1 September 2019. CBP was defined as back pain persisting >3 months. LMM and InterMAT were quantified via MRI-based muscle segmentations using a validated deep learning model. Associations were analyzed using mixed logistic regression, adjusting for age, sex, diabetes, dyslipidemia, osteoporosis, osteoarthritis, physical activity, and study site. Among 27,518 participants (n = 12,193/44.3% female, n = 14,605/55.7% male; median age 49 years IQR 41; 57), 21.8% (n = 6003; n = 2999/50.0% female, n = 3004/50% male; median age 53 years IQR 46; 60) reported CBP, compared to 78.2% (n = 21,515; n = 9194/42.7% female, n = 12,321/57.3% male; median age 48 years IQR 39; 56) who did not. CBP prevalence was highest in those with low (<500 MET min/week) or high (>5000 MET min/week) self-reported physical activity levels (24.6% (n = 10,892) and 22.0% (n = 3800), respectively) compared to moderate (500-5000 MET min/week) levels (19.4% (n = 12,826); p < 0.0001). Adjusted analyses revealed that a higher InterMAT (OR 1.22 per 2-unit Z-score; 95% CI 1.13-1.30; p < 0.0001) was associated with an increased likelihood of chronic back pain (CBP), whereas higher lean muscle mass (LMM) (OR 0.87 per 2-unit Z-score; 95% CI 0.79-0.95; p = 0.003) was associated with a reduced likelihood of CBP. Stratified analyses confirmed these associations persisted in individuals with osteoarthritis (OA-CBP LMM: 22.9 cm<sup>3</sup>/kg/m; InterMAT: 7.53% vs OA-No CBP LMM: 24.3 cm<sup>3</sup>/kg/m; InterMAT: 6.96% both p < 0.0001) and osteoporosis (OP-CBP LMM: 20.9 cm<sup>3</sup>/kg/m; InterMAT: 8.43% vs OP-No CBP LMM: 21.3 cm<sup>3</sup>/kg/m; InterMAT: 7.9% p = 0.16 and p = 0.0019). Higher pain intensity (Pain Intensity Numerical Rating Scale ≥4) correlated with lower LMM (2-unit Z-score deviation = OR, 0.63; 95% CI, 0.57-0.70; p < 0.0001) and higher InterMAT (2-unit Z-score deviation = OR, 1.22; 95% CI, 1.13-1.30; p < 0.0001), independent of physical activity, osteoporosis and osteoarthritis. This large, population-based study highlights the associations of InterMAT and LMM with CBP. Given the limitations of the cross-sectional design, our findings can be seen as an impetus for further causal investigations within a broader, multidisciplinary framework to guide future research toward improved prevention and treatment. The NAKO is funded by the Federal Ministry of Education and Research (BMBF) [project funding reference numbers: 01ER1301A/B/C, 01ER1511D, 01ER1801A/B/C/D and 01ER2301A/B/C], federal states of Germany and the Helmholtz Association, the participating universities and the institutes of the Leibniz Association.

A novel deep learning system for automated diagnosis and grading of lumbar spinal stenosis based on spine MRI: model development and validation.

Wang T, Wang A, Zhang Y, Liu X, Fan N, Yuan S, Du P, Wu Q, Chen R, Xi Y, Gu Z, Fei Q, Zang L

pubmed logopapersJul 1 2025
The study aimed to develop a single-stage deep learning (DL) screening system for automated binary and multiclass grading of lumbar central stenosis (LCS), lateral recess stenosis (LRS), and lumbar foraminal stenosis (LFS). Consecutive inpatients who underwent lumbar MRI at our center were retrospectively reviewed for the internal dataset. Axial and sagittal lumbar MRI scans were collected. Based on a new MRI diagnostic criterion, all MRI studies were labeled by two spine specialists and calibrated by a third spine specialist to serve as reference standard. Furthermore, two spine clinicians labeled all MRI studies independently to compare interobserver reliability with the DL model. Samples were assigned into training, validation, and test sets at a proportion of 8:1:1. Additional patients from another center were enrolled as the external test dataset. A modified single-stage YOLOv5 network was designed for simultaneous detection of regions of interest (ROIs) and grading of LCS, LRS, and LFS. Quantitative evaluation metrics of exactitude and reliability for the model were computed. In total, 420 and 50 patients were enrolled in the internal and external datasets. High recalls of 97.4%-99.8% were achieved for ROI detection of lumbar spinal stenosis (LSS). The system revealed multigrade area under curve (AUC) values of 0.93-0.97 in the internal test set and 0.85-0.94 in the external test set for LCS, LRS, and LFS. In binary grading, the DL model achieved high sensitivities of 0.97 for LCS, 0.98 for LRS, and 0.96 for LFS, slightly better than those achieved by spine clinicians in the internal test set. In the external test set, the binary sensitivities were 0.98 for LCS, 0.96 for LRS, and 0.95 for LFS. For reliability assessment, the kappa coefficients between the DL model and reference standard were 0.92, 0.88, and 0.91 for LCS, LRS, and LFS, respectively, slightly higher than those evaluated by nonexpert spine clinicians. The authors designed a novel DL system that demonstrated promising performance, especially in sensitivity, for automated diagnosis and grading of different types of lumbar spinal stenosis using spine MRI. The reliability of the system was better than that of spine surgeons. The authors' system may serve as a triage tool for LSS to reduce misdiagnosis and optimize routine processes in clinical work.

Comparison of CNNs and Transformer Models in Diagnosing Bone Metastases in Bone Scans Using Grad-CAM.

Pak S, Son HJ, Kim D, Woo JY, Yang I, Hwang HS, Rim D, Choi MS, Lee SH

pubmed logopapersJul 1 2025
Convolutional neural networks (CNNs) have been studied for detecting bone metastases on bone scans; however, the application of ConvNeXt and transformer models has not yet been explored. This study aims to evaluate the performance of various deep learning models, including the ConvNeXt and transformer models, in diagnosing metastatic lesions from bone scans. We retrospectively analyzed bone scans from patients with cancer obtained at 2 institutions: the training and validation sets (n=4626) were from Hospital 1 and the test set (n=1428) was from Hospital 2. The deep learning models evaluated included ResNet18, the Data-Efficient Image Transformer (DeiT), the Vision Transformer (ViT Large 16), the Swin Transformer (Swin Base), and ConvNeXt Large. Gradient-weighted class activation mapping (Grad-CAM) was used for visualization. Both the validation set and the test set demonstrated that the ConvNeXt large model (0.969 and 0.885, respectively) exhibited the best performance, followed by the Swin Base model (0.965 and 0.840, respectively), both of which significantly outperformed ResNet (0.892 and 0.725, respectively). Subgroup analyses revealed that all the models demonstrated greater diagnostic accuracy for patients with polymetastasis compared with those with oligometastasis. Grad-CAM visualization revealed that the ConvNeXt Large model focused more on identifying local lesions, whereas the Swin Base model focused on global areas such as the axial skeleton and pelvis. Compared with traditional CNN and transformer models, the ConvNeXt model demonstrated superior diagnostic performance in detecting bone metastases from bone scans, especially in cases of polymetastasis, suggesting its potential in medical image analysis.

The impact of multi-modality fusion and deep learning on adult age estimation based on bone mineral density.

Cao Y, Zhang J, Ma Y, Zhang S, Li C, Liu S, Chen F, Huang P

pubmed logopapersJul 1 2025
Age estimation, especially in adults, presents substantial challenges in different contexts ranging from forensic to clinical applications. Bone mineral density (BMD), with its distinct age-related variations, has emerged as a critical marker in this domain. This study aims to enhance chronological age estimation accuracy using deep learning (DL) incorporating a multi-modality fusion strategy based on BMD. We conducted a retrospective analysis of 4296 CT scans from a Chinese population, covering August 2015 to November 2022, encompassing lumbar, femur, and pubis modalities. Our DL approach, integrating multi-modality fusion, was applied to predict chronological age automatically. The model's performance was evaluated using an internal real-world clinical cohort of 644 scans (December 2022 to May 2023) and an external cadaver validation cohort of 351 scans. In single-modality assessments, the lumbar modality excelled. However, multi-modality models demonstrated superior performance, evidenced by lower mean absolute errors (MAEs) and higher Pearson's R² values. The optimal multi-modality model exhibited outstanding R² values of 0.89 overall, 0.88 in females, 0.90 in males, with the MAEs of 4.05 overall, 3.69 in females, 4.33 in males in the internal validation cohort. In the external cadaver validation, the model maintained favourable R² values (0.84 overall, 0.89 in females, 0.82 in males) and MAEs (5.01 overall, 4.71 in females, 5.09 in males), highlighting its generalizability across diverse scenarios. The integration of multi-modalities fusion with DL significantly refines the accuracy of adult age estimation based on BMD. The AI-based system that effectively combines multi-modalities BMD data, presenting a robust and innovative tool for accurate AAE, poised to significantly improve both geriatric diagnostics and forensic investigations.

Identifying Primary Sites of Spinal Metastases: Expert-Derived Features vs. ResNet50 Model Using Nonenhanced MRI.

Liu K, Ning J, Qin S, Xu J, Hao D, Lang N

pubmed logopapersJul 1 2025
The spinal column is a frequent site for metastases, affecting over 30% of solid tumor patients. Identifying the primary tumor is essential for guiding clinical decisions but often requires resource-intensive diagnostics. To develop and validate artificial intelligence (AI) models using noncontrast MRI to identify primary sites of spinal metastases, aiming to enhance diagnostic efficiency. Retrospective. A total of 514 patients with pathologically confirmed spinal metastases (mean age, 59.3 ± 11.2 years; 294 males) were included, split into a development set (360) and a test set (154). Noncontrast sagittal MRI sequences (T1-weighted, T2-weighted, and fat-suppressed T2) were acquired using 1.5 T and 3 T scanners. Two models were evaluated for identifying primary sites of spinal metastases: the expert-derived features (EDF) model using radiologist-identified imaging features and a ResNet50-based deep learning (DL) model trained on noncontrast MRI. Performance was assessed using accuracy, precision, recall, F1 score, and the area under the receiver operating characteristic curve (ROC-AUC) for top-1, top-2, and top-3 indicators. Statistical analyses included Shapiro-Wilk, t tests, Mann-Whitney U test, and chi-squared tests. ROC-AUCs were compared via DeLong tests, with 95% confidence intervals from 1000 bootstrap replications and significance at P < 0.05. The EDF model outperformed the DL model in top-3 accuracy (0.88 vs. 0.69) and AUC (0.80 vs. 0.71). Subgroup analysis showed superior EDF performance for common sites like lung and kidney (e.g., kidney F1: 0.94 vs. 0.76), while the DL model had higher recall for rare sites like thyroid (0.80 vs. 0.20). SHapley Additive exPlanations (SHAP) analysis identified sex (SHAP: -0.57 to 0.68), age (-0.48 to 0.98), T1WI signal intensity (-0.29 to 0.72), and pathological fractures (-0.76 to 0.25) as key features. AI techniques using noncontrast MRI improve diagnostic efficiency for spinal metastases. The EDF model outperformed the DL model, showing greater clinical potential. Spinal metastases, or cancer spreading to the spine, are common in patients with advanced cancer, often requiring extensive tests to determine the original tumor site. Our study explored whether artificial intelligence could make this process faster and more accurate using noncontrast MRI scans. We tested two methods: one based on radiologists' expertise in identifying imaging features and another using a deep learning model trained to analyze MRI images. The expert-based method was more reliable, correctly identifying the tumor site in 88% of cases when considering the top three likely diagnoses. This approach may help doctors reduce diagnostic time and improve patient care. 3 TECHNICAL EFFICACY: Stage 2.

Added value of artificial intelligence for the detection of pelvic and hip fractures.

Jaillat A, Cyteval C, Baron Sarrabere MP, Ghomrani H, Maman Y, Thouvenin Y, Pastor M

pubmed logopapersJul 1 2025
To assess the added value of artificial intelligence (AI) for radiologists and emergency physicians in the radiographic detection of pelvic fractures. In this retrospective study, one junior radiologist reviewed 940 X-rays of patients admitted to emergency for a fall with suspicion of pelvic fracture between March 2020 and June 2021. The radiologist analyzed the X-rays alone and then using an AI system (BoneView). In a random sample of 100 exams, the same procedure was repeated alongside five other readers (three radiologists and two emergency physicians with 3-30 years of experience). The reference diagnosis was based on the patient's full set of medical imaging exams and medical records in the months following emergency admission. A total of 633 confirmed pelvic fractures (64.8% from hip and 35.2% from pelvic ring) in 940 patients and 68 pelvic fractures (60% from hip and 40% from pelvic ring) in the 100-patient sample were included. In the whole dataset, the junior radiologist achieved a significant sensitivity improvement with AI assistance (Se<sub>-PELVIC</sub> = 77.25% to 83.73%; p < 0.001, Se<sub>-HIP</sub> 93.24 to 96.49%; p < 0.001 and Se<sub>-PELVIC RING</sub> 54.60% to 64.50%; p < 0.001). However, there was a significant decrease in specificity with AI assistance (Spe<sub>-PELVIC</sub> = 95.24% to 93.25%; p = 0.005 and Spe<sub>-HIP</sub> = 98.30% to 96.90%; p = 0.005). In the 100-patient sample, the two emergency physicians obtained an improvement in fracture detection sensitivity across the pelvic area + 14.70% (p = 0.0011) and + 10.29% (p < 0.007) respectively without a significant decrease in specificity. For hip fractures, E1's sensitivity increased from 59.46% to 70.27% (p = 0.04), and E2's sensitivity increased from 78.38% to 86.49% (p = 0.08). For pelvic ring fractures, E1's sensitivity increased from 12.90% to 32.26% (p = 0.012), and E2's sensitivity increased from 19.35% to 32.26% (p = 0.043). AI improved the diagnostic performance for emergency physicians and radiologists with limited experience in pelvic fracture screening.

FPGA implementation of deep learning architecture for ankylosing spondylitis detection from MRI.

Kocaoğlu S

pubmed logopapersJul 1 2025
Ankylosing Spondylitis (AS), commonly known as Bechterew's disease, is a complex, potentially disabling disease that develops slowly over time and progresses to radiographic sacroiliitis. The etiology of this disease is poorly understood, making it difficult to diagnose. Therefore, treatment is also delayed. This study aims to diagnose AS with an automated system that classifies axial magnetic resonance imaging (MRI) sequences of AS patients. Recently, the application of deep learning neural networks (DLNNs) for MRI classification has become widespread. The implementation of this process on computer-independent end devices is advantageous due to its high computational power and low latency requirements. In this research, an MRI dataset containing images from 527 individuals was used. A deep learning architecture on a Field Programmable Gate Array (FPGA) card was implemented and analyzed. The results show that the classification performed on FPGA in AS diagnosis yields successful results close to the classification performed on CPU.

Visualizing Preosteoarthritis: Updates on UTE-Based Compositional MRI and Deep Learning Algorithms.

Sun D, Wu G, Zhang W, Gharaibeh NM, Li X

pubmed logopapersJul 1 2025
Osteoarthritis (OA) is heterogeneous and involves structural changes in the whole joint, such as cartilage, meniscus/labrum, ligaments, and tendons, mainly with short T2 relaxation times. Detecting OA before the onset of irreversible changes is crucial for early proactive management and limit growing disease burden. The more recent advanced quantitative imaging techniques and deep learning (DL) algorithms in musculoskeletal imaging have shown great potential for visualizing "pre-OA." In this review, we first focus on ultrashort echo time-based magnetic resonance imaging (MRI) techniques for direct visualization as well as quantitative morphological and compositional assessment of both short- and long-T2 musculoskeletal tissues, and second explore how DL revolutionize the way of MRI analysis (eg, automatic tissue segmentation and extraction of quantitative image biomarkers) and the classification, prediction, and management of OA. PLAIN LANGUAGE SUMMARY: Detecting osteoarthritis (OA) before the onset of irreversible changes is crucial for early proactive management. OA is heterogeneous and involves structural changes in the whole joint, such as cartilage, meniscus/labrum, ligaments, and tendons, mainly with short T2 relaxation times. Ultrashort echo time-based magnetic resonance imaging (MRI), in particular, enables direct visualization and quantitative compositional assessment of short-T2 tissues. Deep learning is revolutionizing the way of MRI analysis (eg, automatic tissue segmentation and extraction of quantitative image biomarkers) and the detection, classification, and prediction of disease. They together have made further advances toward identification of imaging biomarkers/features for pre-OA. LEVEL OF EVIDENCE: 5 TECHNICAL EFFICACY: Stage 2.

A Minimal Annotation Pipeline for Deep Learning Segmentation of Skeletal Muscles.

Baudin PY, Balsiger F, Beck L, Boisserie JM, Jouan S, Marty B, Reyngoudt H, Scheidegger O

pubmed logopapersJul 1 2025
Translating quantitative skeletal muscle MRI biomarkers into clinics requires efficient automatic segmentation methods. The purpose of this work is to investigate a simple yet effective iterative methodology for building a high-quality automatic segmentation model while minimizing the manual annotation effort. We used a retrospective database of quantitative MRI examinations (n = 70) of healthy and pathological thighs for training a nnU-Net segmentation model. Healthy volunteers and patients with various neuromuscular diseases, broadly categorized as dystrophic, inflammatory, neurogenic, and unlabeled NMDs. We designed an iterative procedure, progressively adding cases to the training set and using a simple visual five-level rating scale to judge the validity of generated segmentations for clinical use. On an independent test set (n = 20), we assessed the quality of the segmentation in 13 individual thigh muscles using standard segmentation metrics-dice coefficient (DICE) and 95% Hausdorff distance (HD95)-and quantitative biomarkers-cross-sectional area (CSA), fat fraction (FF), and water-T1/T2. We obtained high-quality segmentations (DICE = 0.88 ± 0.15/0.86 ± 0.14, HD95 = 6.35 ± 12.33/6.74 ± 11.57 mm), comparable to recent works, although with a smaller training set (n = 30). Inter-rater agreement on the five-level scale was fair to moderate but showed progressive improvement of the segmentation model along with the iterations. We observed limited differences from manually delineated segmentations on the quantitative outcomes (MAD: CSA = 65.2 mm<sup>2</sup>, FF = 1%, water-T1 = 8.4 ms, water-T2 = 0.35 ms), with variability comparable to manual delineations.
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