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MR-Transformer: A Vision Transformer-based Deep Learning Model for Total Knee Replacement Prediction Using MRI.

Zhang C, Chen S, Cigdem O, Rajamohan HR, Cho K, Kijowski R, Deniz CM

pubmed logopapersJul 16 2025
<i>"Just Accepted" papers have undergone full peer review and have been accepted for publication in <i>Radiology: Artificial Intelligence</i>. This article will undergo copyediting, layout, and proof review before it is published in its final version. Please note that during production of the final copyedited article, errors may be discovered which could affect the content.</i> Purpose To develop a transformer-based deep learning model-MR-Transformer-that leverages ImageNet pretraining and three-dimensional (3D) spatial correlations to predict the progression of knee osteoarthritis to TKR using MRI. Materials and Methods This retrospective study included 353 case-control matched pairs of coronal intermediate-weighted turbo spin-echo (COR-IW-TSE) and sagittal intermediate-weighted turbo spin-echo with fat suppression (SAG-IW-TSE-FS) knee MRIs from the Osteoarthritis Initiative (OAI) database, with a follow-up period up to 9 years, and 270 case-control matched pairs of coronal short-tau inversion recovery (COR-STIR) and sagittal proton density fat-saturated (SAG-PD-FAT-SAT) knee MRIs from the Multicenter Osteoarthritis Study (MOST) database, with a follow-up period up to 7 years. Performance of the MR-Transformer to predict the progression of knee osteoarthritis was compared with that of existing state-of-the-art deep learning models (TSE-Net, 3DMeT, and MRNet) using sevenfold nested cross-validation across the four MRI tissue sequences. Results MR-Transformer achieved areas under the receiver operating characteristic curves (AUCs) of 0.88 (95% CI: 0.85, 0.91), 0.88 (95% CI: 0.85, 0.90), 0.86 (95% CI: 0.82, 0.89), and 0.84 (95% CI: 0.81, 0.87) for COR-IW-TSE, SAG-IW-TSE-FS, COR-STIR, and SAG-PD-FAT-SAT, respectively. The model achieved a higher AUC than that of 3DMeT for all MRI sequences (<i>P</i> < .001). The model showed the highest sensitivity of 83% (95% CI: 78, 87%) and specificity of 83% (95% CI: 76, 88%) for the COR-IW-TSE MRI sequence. Conclusion Compared with the existing deep learning models, the MR-Transformer exhibited state-of-the-art performance in predicting the progression of knee osteoarthritis to TKR using MRIs. ©RSNA, 2025.

An efficient deep learning based approach for automated identification of cervical vertebrae fracture as a clinical support aid.

Singh M, Tripathi U, Patel KK, Mohit K, Pathak S

pubmed logopapersJul 15 2025
Cervical vertebrae fractures pose a significant risk to a patient's health. The accurate diagnosis and prompt treatment need to be provided for effective treatment. Moreover, the automated analysis of the cervical vertebrae fracture is of utmost important, as deep learning models have been widely used and play significant role in identification and classification. In this paper, we propose a novel hybrid transfer learning approach for the identification and classification of fractures in axial CT scan slices of the cervical spine. We utilize the publicly available RSNA (Radiological Society of North America) dataset of annotated cervical vertebrae fractures for our experiments. The CT scan slices undergo preprocessing and analysis to extract features, employing four distinct pre-trained transfer learning models to detect abnormalities in the cervical vertebrae. The top-performing model, Inception-ResNet-v2, is combined with the upsampling component of U-Net to form a hybrid architecture. The hybrid model demonstrates superior performance over traditional deep learning models, achieving an overall accuracy of 98.44% on 2,984 test CT scan slices, which represents a 3.62% improvement over the 95% accuracy of predictions made by radiologists. This study advances clinical decision support systems, equipping medical professionals with a powerful tool for timely intervention and accurate diagnosis of cervical vertebrae fractures, thereby enhancing patient outcomes and healthcare efficiency.

Assessment of local recurrence risk in extremity high-grade osteosarcoma through multimodality radiomics integration.

Luo Z, Liu R, Li J, Ye Q, Zhou Z, Shen X

pubmed logopapersJul 15 2025
BackgroundA timely assessment of local recurrence (LoR) risk in extremity high-grade osteosarcoma is crucial for optimizing treatment strategies and improving patient outcomes.PurposeTo explore the potential of machine-learning algorithms in predicting LoR in patients with osteosarcoma.Material and MethodsData from patients with high-grade osteosarcoma who underwent preoperative radiograph and multiparametric magnetic resonance imaging (MRI) were collected. Machine-learning models were developed and trained on this dataset to predict LoR. The study involved selecting relevant features, training the models, and evaluating their performance using the receiver operating characteristic (ROC) curve and the area under the ROC curve (AUC). DeLong's test was utilized for comparing the AUCs.ResultsThe performance (AUC, sensitivity, specificity, and accuracy) of four classifiers (random forest [RF], support vector machine, logistic regression, and extreme gradient boosting) using radiograph-MRI as image inputs were stable (all Hosmer-Lemeshow index >0.05) with the fair to good prognosis efficacy. The RF classifier using radiograph-MRI features as training inputs exhibited better performance (AUC = 0.806, 0.868) than that using MRI only (AUC = 0.774, 0.771) and radiograph only (AUC = 0.613 and 0.627) in the training and testing sets (<i>P</i> <0.05) while the other three classifiers showed no difference between MRI-only and radiograph-MRI models.ConclusionThis study provides valuable insights into the use of machine learning for predicting LoR in osteosarcoma patients. These findings emphasize the potential of integrating radiomics data with algorithms to improve prognostic assessments.

Deep Learning for Osteoporosis Diagnosis Using Magnetic Resonance Images of Lumbar Vertebrae.

Mousavinasab SM, Hedyehzadeh M, Mousavinasab ST

pubmed logopapersJul 15 2025
This work uses T1, STIR, and T2 MRI sequences of the lumbar vertebrae and BMD measurements to identify osteoporosis using deep learning. An analysis of 1350 MRI images from 50 individuals who had simultaneous BMD and MRI scans was performed. The accuracy of a custom convolution neural network for osteoporosis categorization was assessed using deep learning. T2-weighted MRIs were most diagnostic. The suggested model outperformed T1 and STIR sequences with 88.5% accuracy, 88.9% sensitivity, and 76.1% F1-score. Modern deep learning models like GoogleNet, EfficientNet-B3, ResNet50, InceptionV3, and InceptionResNetV2 were compared to its performance. These designs performed well, but our model was more sensitive and accurate. This research shows that T2-weighted MRI is the best sequence for osteoporosis diagnosis and that deep learning overcomes BMD-based approaches by reducing ionizing radiation. These results support clinical use of deep learning with MRI for safe, accurate, and quick osteoporosis diagnosis.

Direct-to-Treatment Adaptive Radiation Therapy: Live Planning of Spine Metastases Using Novel Cone Beam Computed Tomography.

McGrath KM, MacDonald RL, Robar JL, Cherpak A

pubmed logopapersJul 15 2025
Cone beam computed tomography (CBCT)-based online adaptive radiation therapy is carried out using a synthetic CT (sCT) created through deformable registration between the patient-specific fan-beam CT, fan-beam computed tomography (FBCT), and daily CBCT. Ethos 2.0 allows for plan calculation directly on HyperSight CBCT and uses artificial intelligence-informed tools for daily contouring without the use of a priori information. This breaks an important link between daily adaptive sessions and initial reference plan preparation. This study explores adaptive radiation therapy for spine metastases without prior patient-specific imaging or treatment planning. We hypothesize that adaptive plans can be created when patient-specific positioning and anatomy is incorporated only once the patient has arrived at the treatment unit. An Ethos 2.0 emulator was used to create initial reference plans on 10 patient-specific FBCTs. Reference plans were also created using FBCTs of (1) a library patient with clinically acceptable contours and (2) a water-equivalent phantom with placeholder contours. Adaptive sessions were simulated for each patient using the 3 different starting points. Resulting adaptive plans were compared with determine the significance of patient-specific information prior to the start of treatment. The library patient and phantom reference plans did not generate adaptive plans that differed significantly from the standard workflow for all clinical constraints for target coverage and organ at risk sparing (P > .2). Gamma comparison between the 3 adaptive plans for each patient (3%/3 mm) demonstrated overall similarity of dose distributions (pass rate > 95%), for all but 2 cases. Failures occurred mainly in low-dose regions, highlighting difference in fluence used to achieve the same clinical goals. This study confirmed feasibility of a procedure for treatment of spine metastases that does not rely on previously acquired patient-specific imaging, contours or plan. Reference-free direct-to-treatment workflows are possible and can condense a multistep process to a single location with dedicated resources.

Deep Learning-Based Prediction for Bone Cement Leakage During Percutaneous Kyphoplasty Using Preoperative Computed Tomography: MODEL Development and Validation.

Chen R, Wang T, Liu X, Xi Y, Liu D, Xie T, Wang A, Fan N, Yuan S, Du P, Jiao S, Zhang Y, Zang L

pubmed logopapersJul 14 2025
Retrospective study. To develop a deep learning (DL) model to predict bone cement leakage (BCL) subtypes during percutaneous kyphoplasty (PKP) using preoperative computed tomography (CT) as well as employing multicenter data to evaluate the effectiveness and generalizability of the model. DL excels at automatically extracting features from medical images. However, there is a lack of models that can predict BCL subtypes based on preoperative images. This study included an internal dataset for DL model training, validation, and testing as well as an external dataset for additional model testing. Our model integrated a segment localization module based on vertebral segmentation via three-dimensional (3D) U-Net with a classification module based on 3D ResNet-50. Vertebral level mismatch rates were calculated, and confusion matrixes were used to compare the performance of the DL model with that of spine surgeons in predicting BCL subtypes. Furthermore, the simple Cohen's kappa coefficient was used to assess the reliability of spine surgeons and the DL model against the reference standard. A total of 901 patients containing 997 eligible segments were included in the internal dataset. The model demonstrated a vertebral segment identification accuracy of 96.9%. It also showed high area under the curve (AUC) values of 0.734-0.831 and sensitivities of 0.649-0.900 for BCL prediction in the internal dataset. Similar favorable AUC values of 0.709-0.818 and sensitivities of 0.706-0.857 were observed in the external dataset, indicating the stability and generalizability of the model. Moreover, the model outperformed nonexpert spine surgeons in predicting BCL subtypes, except for type II. The model achieved satisfactory accuracy, reliability, generalizability, and interpretability in predicting BCL subtypes, outperforming nonexpert spine surgeons. This study offers valuable insights for assessing osteoporotic vertebral compression fractures, thereby aiding preoperative surgical decision-making. 3.

Landmark Detection for Medical Images using a General-purpose Segmentation Model

Ekaterina Stansfield, Jennifer A. Mitterer, Abdulrahman Altahhan

arxiv logopreprintJul 13 2025
Radiographic images are a cornerstone of medical diagnostics in orthopaedics, with anatomical landmark detection serving as a crucial intermediate step for information extraction. General-purpose foundational segmentation models, such as SAM (Segment Anything Model), do not support landmark segmentation out of the box and require prompts to function. However, in medical imaging, the prompts for landmarks are highly specific. Since SAM has not been trained to recognize such landmarks, it cannot generate accurate landmark segmentations for diagnostic purposes. Even MedSAM, a medically adapted variant of SAM, has been trained to identify larger anatomical structures, such as organs and their parts, and lacks the fine-grained precision required for orthopaedic pelvic landmarks. To address this limitation, we propose leveraging another general-purpose, non-foundational model: YOLO. YOLO excels in object detection and can provide bounding boxes that serve as input prompts for SAM. While YOLO is efficient at detection, it is significantly outperformed by SAM in segmenting complex structures. In combination, these two models form a reliable pipeline capable of segmenting not only a small pilot set of eight anatomical landmarks but also an expanded set of 72 landmarks and 16 regions with complex outlines, such as the femoral cortical bone and the pelvic inlet. By using YOLO-generated bounding boxes to guide SAM, we trained the hybrid model to accurately segment orthopaedic pelvic radiographs. Our results show that the proposed combination of YOLO and SAM yields excellent performance in detecting anatomical landmarks and intricate outlines in orthopaedic pelvic radiographs.

Pre-trained Under Noise: A Framework for Robust Bone Fracture Detection in Medical Imaging

Robby Hoover, Nelly Elsayed, Zag ElSayed, Chengcheng Li

arxiv logopreprintJul 13 2025
Medical Imagings are considered one of the crucial diagnostic tools for different bones-related diseases, especially bones fractures. This paper investigates the robustness of pre-trained deep learning models for classifying bone fractures in X-ray images and seeks to address global healthcare disparity through the lens of technology. Three deep learning models have been tested under varying simulated equipment quality conditions. ResNet50, VGG16 and EfficientNetv2 are the three pre-trained architectures which are compared. These models were used to perform bone fracture classification as images were progressively degraded using noise. This paper specifically empirically studies how the noise can affect the bone fractures detection and how the pre-trained models performance can be changes due to the noise that affect the quality of the X-ray images. This paper aims to help replicate real world challenges experienced by medical imaging technicians across the world. Thus, this paper establishes a methodological framework for assessing AI model degradation using transfer learning and controlled noise augmentation. The findings provide practical insight into how robust and generalizable different pre-trained deep learning powered computer vision models can be when used in different contexts.

Characterizing aging-related genetic and physiological determinants of spinal curvature.

Wang FM, Ruby JG, Sethi A, Veras MA, Telis N, Melamud E

pubmed logopapersJul 12 2025
Increased spinal curvature is one of the most recognizable aging traits in the human population. However, despite high prevalence, the etiology of this condition remains poorly understood. To gain better insight into the physiological, biochemical, and genetic risk factors involved, we developed a novel machine learning method to automatically derive thoracic kyphosis and lumbar lordosis angles from dual-energy X-ray absorptiometry (DXA) scans in the UK Biobank Imaging cohort. We carry out genome-wide association and epidemiological association studies to identify genetic and physiological risk factors for both traits. In 41,212 participants, we find that on average males and females gain 2.42° in kyphotic and 1.48° in lordotic angle per decade of life. Increased spinal curvature shows a strong association with decreased muscle mass and bone mineral density. Adiposity demonstrates opposing associations, with decreased kyphosis and increased lordosis. Using Mendelian randomization, we show that genes fundamental to the maintenance of musculoskeletal function (COL11A1, PTHLH, ETFA, TWIST1) and cellular homeostasis such as RNA transcription and DNA repair (RAD9A, MMS22L, HIF1A, RAB28) are likely involved in increased spinal curvature. Our findings reveal a complex interplay between genetics, musculoskeletal health, and age-related changes in spinal curvature, suggesting potential drivers of this universal aging trait.

Diabetic Tibial Neuropathy Prediction: Improving interpretability of Various Machine-Learning Models Based on Multimodal-Ultrasound Features Using SHAP Methodology.

Chen Y, Sun Z, Zhong H, Chen Y, Wu X, Su L, Lai Z, Zheng T, Lyu G, Su Q

pubmed logopapersJul 12 2025
This study aimed to develop and evaluate eight machine learning models based on multimodal ultrasound to precisely predict of diabetic tibial neuropathy (DTN) in patients. Additionally, the SHapley Additive exPlanations(SHAP)framework was introduced to quantify the importance of each feature variable, providing a precise and noninvasive assessment tool for DTN patients, optimizing clinical management strategies, and enhancing patient prognosis. A prospective analysis was conducted using multimodal ultrasound and clinical data from 255 suspected DTN patients who visited the Second Affiliated Hospital of Fujian Medical University between January 2024 and November 2024. Key features were selected using Least Absolute Shrinkage and Selection Operator (LASSO) regression. Predictive models were constructed using Extreme Gradient Boosting (XGB), Logistic Regression, Support Vector Machines, k-Nearest Neighbors, Random Forest, Decision Tree, Naïve Bayes, and Neural Network. The SHAP method was employed to refine model interpretability. Furthermore, in order to verify the generalization degree of the model, this study also collected 135 patients from three other tertiary hospitals for external test. LASSO regression identified Echo intensity(EI), Cross-sectional area (CSA), Mean elasticity value(Emean), Superb microvascular imaging(SMI), and History of smoking were key features for DTN prediction. The XGB model achieved an Area Under the Curve (AUC) of 0.94, 0.83 and 0.79 in the training, internal test and external test sets, respectively. SHAP analysis highlighted the ranking significance of EI, CSA, Emean, SMI, and History of smoking. Personalized prediction explanations provided by theSHAP values demonstrated the contribution of each feature to the final prediction, and enhancing model interpretability. Furthermore, decision plots depicted how different features influenced mispredictions, thereby facilitating further model optimization or feature adjustment. This study proposed a DTN prediction model based on machine-learning algorithms applied to multimodal ultrasound data. The results indicated the superior performance of the XGB model and its interpretability was enhanced using SHAP analysis. This cost-effective and user-friendly approach provides potential support for personalized treatment and precision medicine for DTN.
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