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A multi-dynamic low-rank deep image prior (ML-DIP) for real-time 3D cardiovascular MRI

Chong Chen, Marc Vornehm, Preethi Chandrasekaran, Muhammad A. Sultan, Syed M. Arshad, Yingmin Liu, Yuchi Han, Rizwan Ahmad

arxiv logopreprintJul 25 2025
Purpose: To develop a reconstruction framework for 3D real-time cine cardiovascular magnetic resonance (CMR) from highly undersampled data without requiring fully sampled training data. Methods: We developed a multi-dynamic low-rank deep image prior (ML-DIP) framework that models spatial image content and temporal deformation fields using separate neural networks. These networks are optimized per scan to reconstruct the dynamic image series directly from undersampled k-space data. ML-DIP was evaluated on (i) a 3D cine digital phantom with simulated premature ventricular contractions (PVCs), (ii) ten healthy subjects (including two scanned during both rest and exercise), and (iii) five patients with PVCs. Phantom results were assessed using peak signal-to-noise ratio (PSNR) and structural similarity index measure (SSIM). In vivo performance was evaluated by comparing left-ventricular function quantification (against 2D real-time cine) and image quality (against 2D real-time cine and binning-based 5D-Cine). Results: In the phantom study, ML-DIP achieved PSNR > 29 dB and SSIM > 0.90 for scan times as short as two minutes, while recovering cardiac motion, respiratory motion, and PVC events. In healthy subjects, ML-DIP yielded functional measurements comparable to 2D cine and higher image quality than 5D-Cine, including during exercise with high heart rates and bulk motion. In PVC patients, ML-DIP preserved beat-to-beat variability and reconstructed irregular beats, whereas 5D-Cine showed motion artifacts and information loss due to binning. Conclusion: ML-DIP enables high-quality 3D real-time CMR with acceleration factors exceeding 1,000 by learning low-rank spatial and temporal representations from undersampled data, without relying on external fully sampled training datasets.

SUP-Net: Slow-time Upsampling Network for Aliasing Removal in Doppler Ultrasound.

Nahas H, Yu ACH

pubmed logopapersJul 24 2025
Doppler ultrasound modalities, which include spectral Doppler and color flow imaging, are frequently used tools for flow diagnostics because of their real-time point-of-care applicability and high temporal resolution. When implemented using pulse-echo sensing and phase shift estimation principles, this modality's pulse repetition frequency (PRF) is known to influence the maximum detectable velocity. If the PRF is inevitably set below the Nyquist limit due to imaging requirements or hardware constraints, aliasing errors or spectral overlap may corrupt the estimated flow data. To solve this issue, we have devised a deep learning-based framework, powered by a custom slow-time upsampling network (SUP-Net) that leverages spatiotemporal characteristics to upsample the received ultrasound signals across pulse echoes acquired using high-frame-rate ultrasound (HiFRUS). Our framework infers high-PRF signals from signals acquired at low PRF, thereby improving Doppler ultrasound's flow estimation quality. SUP-Net was trained and evaluated on in vivo femoral acquisitions from 20 participants and was applied recursively to resolve scenarios with excessive aliasing across a range of PRFs. We report the successful reconstruction of slow-time signals with frequency content that exceeds the Nyquist limit once and twice. By operating on the fundamental slow-time signals, our framework can resolve aliasing-related artifacts in several downstream modalities, including color Doppler and pulse wave Doppler.

Deep learning reconstruction of zero echo time magnetic resonance imaging: diagnostic performance in axial spondyloarthritis.

Yi J, Hahn S, Lee HJ, Lee S, Park S, Lee J, de Arcos J, Fung M

pubmed logopapersJul 24 2025
To compare the diagnostic performance of deep learning reconstruction (DLR) of zero echo time (ZTE) MRI for structural lesions in patients with axial spondyloarthritis, against T1WI and ZTE MRI without DLR, using CT as the reference standard. From February 2021 to December 2022, 26 patients (52 sacroiliac joints (SIJ) and 104 quadrants) underwent SIJ MRIs. Three readers assessed overall image quality and structural conspicuity, scoring SIJs for structural lesions on T1WI, ZTE, and ZTE DLR 50%, 75%, and 100%, respectively. Diagnostic performance was evaluated using CT as the reference standard, and inter-reader agreement was assessed using weighted kappa. ZTE DLR 100% showed the highest image quality scores for readers 1 and 2, and the best structural conspicuity scores for all three readers. In readers 2 and 3, ZTE DLR 75% showed the best diagnostic performance for bone sclerosis, outperforming T1WI and ZTE (all p < 0.05). In all readers, ZTE DLR 100% showed superior diagnostic performance for bone erosion compared to T1WI and ZTE (all p < 0.01). For bone sclerosis, ZTE DLR 50% showed the highest kappa coefficients between readers 1 and 2 and between readers 1 and 3. For bone erosion, ZTE DLR 100% showed the highest kappa coefficients between readers. ZTE MRI with DLR outperformed T1WI and ZTE MRI without DLR in diagnosing bone sclerosis and erosion of the SIJ, while offering similar subjective image quality and structural conspicuity. Question With zero echo time (ZTE) alone, small structural lesions, such as bone sclerosis and erosion, are challenging to confirm in axial spondyloarthritis. Findings ZTE deep learning reconstruction (DLR) showed higher diagnostic performance for detecting bone sclerosis and erosion, compared with T1WI and ZTE. Clinical relevance Applying DLR to ZTE enhances diagnostic capability for detecting bone sclerosis and erosion in the sacroiliac joint, aiding in the early diagnosis of axial spondyloarthritis.

Deep Learning-Driven High Spatial Resolution Attenuation Imaging for Ultrasound Tomography (AI-UT).

Liu M, Kou Z, Wiskin JW, Czarnota GJ, Oelze ML

pubmed logopapersJul 24 2025
Ultrasonic attenuation can be used to characterize tissue properties of the human breast. Both quantitative ultrasound (QUS) and ultrasound tomography (USCT) can provide attenuation estimation. However, limitations have been identified for both approaches. In QUS, the generation of attenuation maps involves separating the whole image into different data blocks. The optimal size of the data block is around 15 to 30 pulse lengths, which dramatically decreases the spatial resolution for attenuation imaging. In USCT, the attenuation is often estimated with a full wave inversion (FWI) method, which is affected by background noise. In order to achieve a high resolution attenuation image with low variance, a deep learning (DL) based method was proposed. In the approach, RF data from 60 angle views from the QTI Breast Acoustic CT<sup>TM</sup> Scanner were acquired as the input and attenuation images as the output. To improve image quality for the DL method, the spatial correlation between speed of sound (SOS) and attenuation were used as a constraint in the model. The results indicated that by including the SOS structural information, the performance of the model was improved. With a higher spatial resolution attenuation image, further segmentation of the breast can be achieved. The structural information and actual attenuation values provided by DL-generated attenuation images were validated with the values from the literature and the SOS-based segmentation map. The information provided by DL-generated attenuation images can be used as an additional biomarker for breast cancer diagnosis.

Evaluation of Brain Stiffness in Patients Undergoing Carotid Angioplasty and Stenting Using Magnetic Resonance Elastography.

Wu CH, Murphy MC, Chiang CC, Chen ST, Chung CP, Lirng JF, Luo CB, Rossman PJ, Ehman RL, Huston J, Chang FC

pubmed logopapersJul 24 2025
Percutaneous transluminal angioplasty and stenting (PTAS) in patients with carotid stenosis may have potential effects on brain parenchyma. However, current studies on parenchymal changes are scarce due to the need for advanced imaging modalities. Consequently, the alterations in brain parenchyma following PTAS remain an unsolved issue. To investigate changes to the brain parenchyma using magnetic resonance elastography (MRE). Prospective. 13 patients (6 women and 7 men; 39 MRI imaging sessions) with severe unilateral carotid stenosis patients indicated for PTAS were recruited between 2021 and 2024. Noncontrast MRI sequences including MRE (spin echo) were acquired using 3 T scanners. All patients underwent MRE before (preprocedural), within 24 h (early postprocedural) and 3 months after (delayed postprocedural) PTAS. Preprocedural and delayed postprocedural ultrasonographic peak systolic velocity (PSV) was recorded. MRE stiffness and damping ratio were evaluated via neural network inversion of the whole brain, in 14 gray matter (GM) and 12 white matter (WM) regions. Stiffness and damping ratio differences between each pair of MR sessions for each subject were identified by paired sample t tests. The correlations of stiffness and damping ratio with stenosis grade and ultrasonographic PSV dynamics were evaluated by Pearson correlation coefficients. The statistical significance was defined as p < 0.05. The stiffness of lesion side insula, deep GM, and deep WM increased significantly from preprocedural to delayed postprocedural MRE. Increasing deep GM stiffness on the lesion side was positively correlated with the DSA stenosis grade significantly (r = 0.609). The lesion side insula stiffness increments were positively correlated with PSV decrements significantly (r = 0.664). Regional brain stiffness increased 3 months after PTAS. Lesion side stiffness was positively correlated with stenosis grades in deep GM and PSV decrements in the insula. EVIDENCE LEVEL: 2. Stage 2.

Latent-k-space of Refinement Diffusion Model for Accelerated MRI Reconstruction.

Lu Y, Xie X, Wang S, Liu Q

pubmed logopapersJul 24 2025
Recent advances have applied diffusion model (DM) to magnetic resonance imaging (MRI) reconstruction, demonstrating impressive performance. However, current DM-based MRI reconstruction methods suffer from two critical limitations. First, they model image features at the pixel-level and require numerous iterations for the final image reconstruction, leading to high computational costs. Second, most of these methods operate in the image domain, which cannot avoid the introduction of secondary artifacts. To address these challenges, we propose a novel latent-k-space refinement diffusion model (LRDM) for MRI reconstruction. Specifically, we encode the original k-space data into a highly compact latent space to capture the primary features for accelerated acquisition and apply DM in the low-dimensional latent-k-space to generate prior knowledge. The compact latent space allows the DM to require only 4 iterations to generate accurate priors. To compensate for the inevitable loss of detail during latent-k-space diffusion, we incorporate an additional diffusion model focused exclusively on refining high-frequency structures and features. The results from both models are then decoded and combined to obtain the final reconstructed image. Experimental results demonstrate that the proposed method significantly reduces reconstruction time while delivering comparable image reconstruction quality to conventional DM-based approaches.&#xD.

Elucidating the Design Space of Arbitrary-Noise-Based Diffusion Models

Xingyu Qiu, Mengying Yang, Xinghua Ma, Dong Liang, Yuzhen Li, Fanding Li, Gongning Luo, Wei Wang, Kuanquan Wang, Shuo Li

arxiv logopreprintJul 24 2025
EDM elucidates the unified design space of diffusion models, yet its fixed noise patterns restricted to pure Gaussian noise, limit advancements in image restoration. Our study indicates that forcibly injecting Gaussian noise corrupts the degraded images, overextends the image transformation distance, and increases restoration complexity. To address this problem, our proposed EDA Elucidates the Design space of Arbitrary-noise-based diffusion models. Theoretically, EDA expands the freedom of noise pattern while preserving the original module flexibility of EDM, with rigorous proof that increased noise complexity incurs no additional computational overhead during restoration. EDA is validated on three typical tasks: MRI bias field correction (global smooth noise), CT metal artifact reduction (global sharp noise), and natural image shadow removal (local boundary-aware noise). With only 5 sampling steps, EDA outperforms most task-specific methods and achieves state-of-the-art performance in bias field correction and shadow removal.

Thin-Slice Brain CT Image Quality and Lesion Detection Evaluation in Deep Learning Reconstruction Algorithm.

Sun J, Yao H, Han T, Wang Y, Yang L, Hao X, Wu S

pubmed logopapersJul 23 2025
Clinical evaluation of Artificial Intelligence (AI)-based Precise Image (PI) algorithm in brain imaging remains limited. PI is a deep-learning reconstruction (DLR) technique that reduces image noise while maintaining a familiar Filtered Back Projection (FBP)-like appearance at low doses. This study aims to compare PI, Iterative Reconstruction (IR), and FBP-in improving image quality and enhancing lesion detection in 1.0 mm thin-slice brain computed tomography (CT) images. A retrospective analysis was conducted on brain non-contrast CT scans from August to September 2024 at our institution. Each scan was reconstructed using four methods: routine 5.0 mm FBP (Group A), thin-slice 1.0 mm FBP (Group B), thin-slice 1.0 mm IR (Group C), and thin-slice 1.0 mm PI (Group D). Subjective image quality was assessed by two radiologists using a 4- or 5‑point Likert scale. Objective metrics included contrast-to-noise ratio (CNR), signal-to-noise ratio (SNR), and image noise across designated regions of interest (ROIs). 60 patients (65.47 years ± 18.40; 29 males and 31 females) were included. Among these, 39 patients had lesions, primarily low-density lacunar infarcts. Thin-slice PI images demonstrated the lowest image noise and artifacts, alongside the highest CNR and SNR values (p < 0.001) compared to Groups A, B, and C. Subjective assessments revealed that both PI and IR provided significantly improved image quality over routine FBP (p < 0.05). Specifically, Group D (PI) achieved superior lesion conspicuity and diagnostic confidence, with a 100% detection rate for lacunar lesions, outperforming Groups B and A. PI reconstruction significantly enhances image quality and lesion detectability in thin-slice brain CT scans compared to IR and FBP, suggesting its potential as a new clinical standard.

Dual-Network Deep Learning for Accelerated Head and Neck MRI: Enhanced Image Quality and Reduced Scan Time.

Li S, Yan W, Zhang X, Hu W, Ji L, Yue Q

pubmed logopapersJul 22 2025
Head-and-neck MRI faces inherent challenges, including motion artifacts and trade-offs between spatial resolution and acquisition time. We aimed to evaluate a dual-network deep learning (DL) super-resolution method for improving image quality and reducing scan time in T1- and T2-weighted head-and-neck MRI. In this prospective study, 97 patients with head-and-neck masses were enrolled at xx from August 2023 to August 2024. After exclusions, 58 participants underwent paired conventional and accelerated T1WI and T2WI MRI sequences, with the accelerated sequences being reconstructed using a dual-network DL framework for super-resolution. Image quality was assessed both quantitatively (signal-to-noise ratio [SNR], contrast-to-noise ratio [CNR], contrast ratio [CR]) and qualitatively by two blinded radiologists using a 5-point Likert scale for image sharpness, lesion conspicuity, structure delineation, and artifacts. Wilcoxon signed-rank tests were used to compare paired outcomes. Among 58 participants (34 men, 24 women; mean age 51.37 ± 13.24 years), DL reconstruction reduced scan times by 46.3% (T1WI) and 26.9% (T2WI). Quantitative analysis showed significant improvements in SNR (T1WI: 26.33 vs. 20.65; T2WI: 14.14 vs. 11.26) and CR (T1WI: 0.20 vs. 0.18; T2WI: 0.34 vs. 0.30; all p < 0.001), with comparable CNR (p > 0.05). Qualitatively, image sharpness, lesion conspicuity, and structure delineation improved significantly (p < 0.05), while artifact scores remained similar (all p > 0.05). The dual-network DL method significantly enhanced image quality and reduced scan times in head-and-neck MRI while maintaining diagnostic performance comparable to conventional methods. This approach offers potential for improved workflow efficiency and patient comfort.

AgentMRI: A Vison Language Model-Powered AI System for Self-regulating MRI Reconstruction with Multiple Degradations.

Sajua GA, Akhib M, Chang Y

pubmed logopapersJul 22 2025
Artificial intelligence (AI)-driven autonomous agents are transforming multiple domains by integrating reasoning, decision-making, and task execution into a unified framework. In medical imaging, such agents have the potential to change workflows by reducing human intervention and optimizing image quality. In this paper, we introduce the AgentMRI. It is an AI-driven system that leverages vision language models (VLMs) for fully autonomous magnetic resonance imaging (MRI) reconstruction in the presence of multiple degradations. Unlike traditional MRI correction or reconstruction methods, AgentMRI does not rely on manual intervention for post-processing or does not rely on fixed correction models. Instead, it dynamically detects MRI corruption and then automatically selects the best correction model for image reconstruction. The framework uses a multi-query VLM strategy to ensure robust corruption detection through consensus-based decision-making and confidence-weighted inference. AgentMRI automatically chooses deep learning models that include MRI reconstruction, motion correction, and denoising models. We evaluated AgentMRI in both zero-shot and fine-tuned settings. Experimental results on a comprehensive brain MRI dataset demonstrate that AgentMRI achieves an average of 73.6% accuracy in zero-shot and 95.1% accuracy for fine-tuned settings. Experiments show that it accurately executes the reconstruction process without human intervention. AgentMRI eliminates manual intervention and introduces a scalable and multimodal AI framework for autonomous MRI processing. This work may build a significant step toward fully autonomous and intelligent MR image reconstruction systems.
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