Accelerated Patient-specific Non-Cartesian MRI Reconstruction using Implicit Neural Representations.
Authors
Affiliations (7)
Affiliations (7)
- Radiation Oncology, University of California, San Francisco, 505 Parnassus Ave, San Francisco, CA 94143. Electronic address: [email protected].
- Radiation Oncology, University of California, Los Angeles, 200 Medical Plaza, Los Angeles, CA 90095.
- Radiology at Children's Hospital Los Angeles, Keck School of Medicine, University of Southern California, 1975 Zonal Ave, Los Angeles, CA 90033.
- Collage of Arts and Sciences, University of San Francisco, 2130 Fulton Street, San Francisco, CA 94117.
- Radiation Oncology, University of California, San Francisco, 505 Parnassus Ave, San Francisco, CA 94143.
- Radiology, University of California, San Francisco, 505 Parnassus Ave, San Francisco, CA 94143.
- Radiation Oncology, University of California, San Francisco, 505 Parnassus Ave, San Francisco, CA 94143. Electronic address: [email protected].
Abstract
Accelerating MR acquisition is essential for image guided therapeutic applications. Compressed sensing (CS) has been developed to minimize image artifacts in accelerated scans, but the required iterative reconstruction is computationally complex and difficult to generalize. Convolutional neural networks (CNNs)/Transformers-based deep learning (DL) methods emerged as a faster alternative but face challenges in modeling continuous k-space, a problem amplified with non-Cartesian sampling commonly used in accelerated acquisition. In comparison, implicit neural representations can model continuous signals in the frequency domain and thus are compatible with arbitrary k-space sampling patterns. The current study develops a novel generative-adversarially trained implicit neural representations (k-GINR) for de novo undersampled non-Cartesian k-space reconstruction. k-GINR consists of two stages: 1) supervised training on an existing patient cohort; 2) self-supervised patient-specific optimization. The StarVIBE T1-weighted liver dataset consisting of 118 prospectively acquired scans and corresponding coil data were employed for testing. k-GINR is compared with two INR based methods, NeRP and k-NeRP, an unrolled DL method, Deep Cascade CNN, and CS. k-GINR consistently outperformed the baselines with a larger performance advantage observed at very high accelerations (PSNR: 6.8%-15.2% higher at 3 times, 15.1%-48.8% at 10 times, and 29.3%-60.5% higher at 20 times). The reconstruction times for k-GINR, NeRP, k-NeRP, CS, and Deep Cascade CNN were approximately 3 minutes, 4-10 minutes, 3 minutes, 4 minutes and 3 second, respectively. k-GINR, an innovative two-stage INR network incorporating adversarial training, was designed for direct non-Cartesian k-space reconstruction for new incoming patients. It demonstrated superior image quality compared to CS and Deep Cascade CNN across a wide range of acceleration ratios.