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Fusing Radiomic Features with Deep Representations for Gestational Age Estimation in Fetal Ultrasound Images

Fangyijie Wang, Yuan Liang, Sourav Bhattacharjee, Abey Campbell, Kathleen M. Curran, Guénolé Silvestre

arxiv logopreprintJun 25 2025
Accurate gestational age (GA) estimation, ideally through fetal ultrasound measurement, is a crucial aspect of providing excellent antenatal care. However, deriving GA from manual fetal biometric measurements depends on the operator and is time-consuming. Hence, automatic computer-assisted methods are demanded in clinical practice. In this paper, we present a novel feature fusion framework to estimate GA using fetal ultrasound images without any measurement information. We adopt a deep learning model to extract deep representations from ultrasound images. We extract radiomic features to reveal patterns and characteristics of fetal brain growth. To harness the interpretability of radiomics in medical imaging analysis, we estimate GA by fusing radiomic features and deep representations. Our framework estimates GA with a mean absolute error of 8.0 days across three trimesters, outperforming current machine learning-based methods at these gestational ages. Experimental results demonstrate the robustness of our framework across different populations in diverse geographical regions. Our code is publicly available on \href{https://github.com/13204942/RadiomicsImageFusion_FetalUS}{GitHub}.

Alterations in the functional MRI-based temporal brain organisation in individuals with obesity.

Lee S, Namgung JY, Han JH, Park BY

pubmed logopapersJun 25 2025
Obesity is associated with functional alterations in the brain. Although spatial organisation changes in the brains of individuals with obesity have been widely studied, the temporal dynamics in their brains remain poorly understood. Therefore, in this study, we investigated variations in the intrinsic neural timescale (INT) across different degrees of obesity using resting-state functional and diffusion magnetic resonance imaging data from the enhanced Nathan Kline Institute Rockland Sample database. We examined the relationship between the INT and obesity phenotypes using supervised machine learning, controlling for age and sex. To further explore the structure-function characteristics of these regions, we assessed the modular network properties by analysing the participation coefficients and within-module degree derived from the structure-function coupling matrices. Finally, the INT values of the identified regions were used to predict eating behaviour traits. A significant negative correlation was observed, particularly in the default mode, limbic and reward networks. We found a negative association with the participation coefficients, suggesting that shorter INT values in higher-order association areas are related to reduced network integration. Moreover, the INT values of these identified regions moderately predicted eating behaviours, underscoring the potential of the INT as a candidate marker for obesity and eating behaviours. These findings provide insight into the temporal organisation of neural activity in obesity, highlighting the role of specific brain networks in shaping behavioural outcomes.

Contrast-enhanced image synthesis using latent diffusion model for precise online tumor delineation in MRI-guided adaptive radiotherapy for brain metastases.

Ma X, Ma Y, Wang Y, Li C, Liu Y, Chen X, Dai J, Bi N, Men K

pubmed logopapersJun 25 2025
&#xD;Magnetic resonance imaging-guided adaptive radiotherapy (MRIgART) is a promising technique for long-course RT of large-volume brain metastasis (BM), due to the capacity to track tumor changes throughout treatment course. Contrast-enhanced T1-weighted (T1CE) MRI is essential for BM delineation, yet is often unavailable during online treatment concerning the requirement of contrast agent injection. This study aims to develop a synthetic T1CE (sT1CE) generation method to facilitate accurate online adaptive BM delineation.&#xD;Approach:&#xD;We developed a novel ControlNet-coupled latent diffusion model (CTN-LDM) combined with a personalized transfer learning strategy and a denoising diffusion implicit model (DDIM) inversion method to generate high quality sT1CE images from online T2-weighted (T2) or fluid attenuated inversion recovery (FLAIR) images. Visual quality of sT1CE images generated by the CTN-LDM was compared with classical deep learning models. BM delineation results using the combination of our sT1CE images and online T2/FLAIR images were compared with the results solely using online T2/FLAIR images, which is the current clinical method.&#xD;Main results:&#xD;Visual quality of sT1CE images from our CTN-LDM was superior to classical models both quantitatively and qualitatively. Leveraging sT1CE images, radiation oncologists achieved significant higher precision of adaptive BM delineation, with average Dice similarity coefficient of 0.93 ± 0.02 vs. 0.86 ± 0.04 (p < 0.01), compared with only using online T2/FLAIR images. &#xD;Significance:&#xD;The proposed method could generate high quality sT1CE images and significantly improve accuracy of online adaptive tumor delineation for long-course MRIgART of large-volume BM, potentially enhancing treatment outcomes and minimizing toxicity.

Novel Application of Connectomics to the Surgical Management of Pediatric Arteriovenous Malformations.

Syed SA, Al-Mufti F, Hanft SJ, Gandhi CD, Pisapia JM

pubmed logopapersJun 25 2025
Introduction The emergence of connectomics in neurosurgery has allowed for construction of detailed maps of white matter connections, incorporating both structural and functional connectivity patterns. The advantage of mapping cerebral vascular lesions to guide surgical approach shows great potential. We aim to identify the clinical utility of connectomics for the surgical treatment of pediatric arteriovenous malformations (AVM). Case Presentation We present two illustrative cases of the application of connectomics to the management of cerebral AVM in a 9-year-old and 8-year-old female. Using magnetic resonance anatomic and diffusion tensor imaging, a machine learning algorithm generated patient-specific representations of the corticospinal tract for the first patient, and the optic radiations for the second patient. The default mode network and language network were also examined for each patient. The imaging output served as an adjunct to guide operative decision making. It assisted with selection of the superior parietal lobule as the operative corridor for the first case. Furthermore, it alerted the surgeon to white matter tracts in close proximity to the AVM nidus during resection. Finally, it aided in risk versus benefit analysis regarding treatment approach, such as craniotomy for resection for the first patient versus radiosurgery for the second patient. Both patients had favorable neurologic outcomes at the available follow-up period. Conclusion Use of the software integrated well with clinical workflow. The output was used for planning and overlaid on the intraoperative neuro-navigation system. It improved visualization of eloquent regions, especially those networks not visible on standard anatomic imaging. Future studies will focus on expanding the cohort, conducting in pre- and post-operative connectomic analysis with correlation to clinical outcome measures, and incorporating functional magnetic resonance imaging.

Development and in silico imaging trial evaluation of a deep-learning-based transmission-less attenuation compensation method for DaT SPECT

Zitong Yu, Md Ashequr Rahman, Zekun Li, Chunwei Ying, Hongyu An, Tammie L. S. Benzinger, Richard Laforest, Jingqin Luo, Scott A. Norris, Abhinav K. Jha

arxiv logopreprintJun 25 2025
Quantitative measures of dopamine transporter (DaT) uptake in caudate, putamen, and globus pallidus derived from DaT-single-photon emission computed tomography (SPECT) images are being investigated as biomarkers to diagnose, assess disease status, and track the progression of Parkinsonism. Reliable quantification from DaT-SPECT images requires performing attenuation compensation (AC), typically with a separate X-ray CT scan. Such CT-based AC (CTAC) has multiple challenges, a key one being the non-availability of X-ray CT component on many clinical SPECT systems. Even when a CT is available, the additional CT scan leads to increased radiation dose, costs, and complexity, potential quantification errors due to SPECT-CT misalignment, and higher training and regulatory requirements. To overcome the challenges with the requirement of a CT scan for AC in DaT SPECT, we propose a deep learning (DL)-based transmission-less AC method for DaT-SPECT (DaT-CTLESS). An in silico imaging trial, titled ISIT-DaT, was designed to evaluate the performance of DaT-CTLESS on the regional uptake quantification task. We observed that DaT-CTLESS yielded a significantly higher correlation with CTAC than that between UAC and CTAC on the regional DaT uptake quantification task. Further, DaT-CLTESS had an excellent agreement with CTAC on this task, significantly outperformed UAC in distinguishing patients with normal versus reduced putamen SBR, yielded good generalizability across two scanners, was generally insensitive to intra-regional uptake heterogeneity, demonstrated good repeatability, exhibited robust performance even as the size of the training data was reduced, and generally outperformed the other considered DL methods on the task of quantifying regional uptake across different training dataset sizes. These results provide a strong motivation for further clinical evaluation of DaT-CTLESS.

Patch2Loc: Learning to Localize Patches for Unsupervised Brain Lesion Detection

Hassan Baker, Austin J. Brockmeier

arxiv logopreprintJun 25 2025
Detecting brain lesions as abnormalities observed in magnetic resonance imaging (MRI) is essential for diagnosis and treatment. In the search of abnormalities, such as tumors and malformations, radiologists may benefit from computer-aided diagnostics that use computer vision systems trained with machine learning to segment normal tissue from abnormal brain tissue. While supervised learning methods require annotated lesions, we propose a new unsupervised approach (Patch2Loc) that learns from normal patches taken from structural MRI. We train a neural network model to map a patch back to its spatial location within a slice of the brain volume. During inference, abnormal patches are detected by the relatively higher error and/or variance of the location prediction. This generates a heatmap that can be integrated into pixel-wise methods to achieve finer-grained segmentation. We demonstrate the ability of our model to segment abnormal brain tissues by applying our approach to the detection of tumor tissues in MRI on T2-weighted images from BraTS2021 and MSLUB datasets and T1-weighted images from ATLAS and WMH datasets. We show that it outperforms the state-of-the art in unsupervised segmentation. The codebase for this work can be found on our \href{https://github.com/bakerhassan/Patch2Loc}{GitHub page}.

Fusing Radiomic Features with Deep Representations for Gestational Age Estimation in Fetal Ultrasound Images

Fangyijie Wang, Yuan Liang, Sourav Bhattacharjee, Abey Campbell, Kathleen M. Curran, Guénolé Silvestre

arxiv logopreprintJun 25 2025
Accurate gestational age (GA) estimation, ideally through fetal ultrasound measurement, is a crucial aspect of providing excellent antenatal care. However, deriving GA from manual fetal biometric measurements depends on the operator and is time-consuming. Hence, automatic computer-assisted methods are demanded in clinical practice. In this paper, we present a novel feature fusion framework to estimate GA using fetal ultrasound images without any measurement information. We adopt a deep learning model to extract deep representations from ultrasound images. We extract radiomic features to reveal patterns and characteristics of fetal brain growth. To harness the interpretability of radiomics in medical imaging analysis, we estimate GA by fusing radiomic features and deep representations. Our framework estimates GA with a mean absolute error of 8.0 days across three trimesters, outperforming current machine learning-based methods at these gestational ages. Experimental results demonstrate the robustness of our framework across different populations in diverse geographical regions. Our code is publicly available on \href{https://github.com/13204942/RadiomicsImageFusion_FetalUS}.

Association of peripheral immune markers with brain age and dementia risk estimated using deep learning methods.

Huang X, Yuan S, Ling Y, Tan S, Bai Z, Xu Y, Shen S, Lyu J, Wang H

pubmed logopapersJun 25 2025
The peripheral immune system is essential for maintaining central nervous system homeostasis. This study investigates the effects of peripheral immune markers on accelerated brain aging and dementia using brain-predicted age difference based on neuroimaging. By leveraging data from the UK Biobank, Cox regression was used to explore the relationship between peripheral immune markers and dementia, and multivariate linear regression to assess associations between peripheral immune biomarkers and brain structure. Additionally, we established a brain age prediction model using Simple Fully Convolutional Network (SFCN) deep learning architecture. Analysis of the resulting brain-Predicted Age Difference (PAD) revealed relationships between accelerated brain aging, peripheral immune markers, and dementia. During the median follow-up period of 14.3 years, 4, 277 dementia cases were observed among 322, 761 participants. Both innate and adaptive immune markers correlated with dementia risk. NLR showed the strongest association with dementia risk (HR = 1.14; 95% CI: 1.11-1.18, P<0.001). Multivariate linear regression revealed significant associations between peripheral immune markers and brain regional structural indices. Utilizing the deep learning-based SFCN model, the estimated brain age of dementia subjects (MAE = 5.63, r2 = - 0.46, R = 0.22) was determined. PAD showed significant correlation with dementia risk and certain peripheral immune markers, particularly in individuals with positive brain age increment. This study employs brain age as a quantitative marker of accelerated brain aging to investigate its potential associations with peripheral immunity and dementia, highlighting the importance of early intervention targeting peripheral immune markers to delay brain aging and prevent dementia.

Comprehensive predictive modeling in subarachnoid hemorrhage: integrating radiomics and clinical variables.

Urbanos G, Castaño-León AM, Maldonado-Luna M, Salvador E, Ramos A, Lechuga C, Sanz C, Juárez E, Lagares A

pubmed logopapersJun 24 2025
Subarachnoid hemorrhage (SAH) is a severe condition with high morbidity and long-term neurological consequences. Radiomics, by extracting quantitative features from Computed Tomograhpy (CT) scans, may reveal imaging biomarkers predictive of outcomes. This study evaluates the predictive value of radiomics in SAH for multiple outcomes and compares its performance to models based on clinical data.Radiomic features were extracted from admission CTs using segmentations of brain tissue (white and gray matter) and hemorrhage. Machine learning models with cross-validation were trained using clinical data, radiomics, or both, to predict 6-month mortality, Glasgow Outcome Scale (GOS), vasospasm, and long-term hydrocephalus. SHapley Additive exPlanations (SHAP) analysis was used to interpret feature contributions.The training dataset included 403 aneurysmal SAH patients; GOS predictions used all patients, while vasospasm and hydrocephalus predictions excluded those with incomplete data or early death, leaving 328 and 332 patients, respectively. Radiomics and clinical models demonstrated comparable performance, achieving in validation set AUCs more than 85% for six-month mortality and clinical outcome, and 75% and 86% for vasospasm and hydrocephalus, respectively. In an independent cohort of 41 patients, the combined models yielded AUCs of 89% for mortality, 87% for clinical outcome, 66% for vasospasm, and 72% for hydrocephalus. SHAP analysis highlighted significant contributions of radiomic features from brain tissue and hemorrhage segmentation, alongside key clinical variables, in predicting SAH outcomes.This study underscores the potential of radiomics-based approaches for SAH outcome prediction, demonstrating predictive power comparable to traditional clinical models and enhancing understanding of SAH-related complications.Clinical trial number Not applicable.

Brain ultrasonography in neurosurgical patients.

Mahajan C, Kapoor I, Prabhakar H

pubmed logopapersJun 24 2025
Brain ultrasound is a popular point-of-care test that helps visualize brain structures. This review highlights recent developments in brain ultrasonography. There is a need to keep pace with the ongoing technological advancements and establishing standardized quality criteria for improving its utility in clinical practice. Newer automated indices derived from transcranial Doppler help establish its role as a noninvasive monitor of intracranial pressure and diagnosing vasospasm/delayed cerebral ischemia. A novel robotic transcranial Doppler system equipped with artificial intelligence allows real-time continuous neuromonitoring. Intraoperative ultrasound assists neurosurgeons in real-time localization of brain lesions and helps in assessing the extent of resection, thereby enhancing surgical precision and safety. Optic nerve sheath diameter point-of-care ultrasonography is an effective means of diagnosing raised intracranial pressure, triaging, and prognostication. The quality criteria checklist can help standardize this technique. Newer advancements like focused ultrasound, contrast-enhanced ultrasound, and functional ultrasound have also been discussed. Brain ultrasound continues to be a critical bedside tool in neurologically injured patients. With the advent of technological advancements, its utility has widened and its capabilities have expanded, making it more accurate and versatile in clinical practice.
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