Automatic quantification of intramyocardial motion and strain from tagging MRI remains an important but challenging task. We propose a method using implicit neural representations (INRs), conditioned on learned latent codes, to predict continuous left ventricular (LV) displacement -- without requiring inference-time optimisation. Evaluated on 452 UK Biobank test cases, our method achieved the best tracking accuracy (2.14 mm RMSE) and the lowest combined error in global circumferential (2.86%) and radial (6.42%) strain compared to three deep learning baselines. In addition, our method is $\sim$380$\times$ faster than the most accurate baseline. These results highlight the suitability of INR-based models for accurate and scalable analysis of myocardial strain in large CMR datasets.

Alzheimer's disease (AD) is considered to be one of the neurodegenerative diseases with possible cognitive deficits related to dementia in human subjects. High priority should be put on efforts aimed at early detection of AD. Here, images undergo a pre-processing phase that integrates image resizing and the application of median filters. After that, processed images are subjected to data augmentation procedures. Feature extraction from WOA-based ResNet, together with extracted convolutional neural network (CNN) features from pre-processed images, is used to train proposed DL model to classify AD. The process is executed using the proposed Attention Gated-VGG model. The proposed method outperformed normal methodologies when tested and achieved an accuracy of 96.7%, sensitivity of 97.8%, and specificity of 96.3%. The results have proven that Attention Gated-VGG model is a very promising technique for classifying AD.

Structural magnetic resonance imaging (sMRI) combined with deep learning has achieved remarkable progress in the prediction and diagnosis of Alzheimer's disease (AD). Existing studies have used CNN and transformer to build a well-performing network, but most of them are based on pretraining or ignoring the asymmetrical character caused by brain disorders. We propose an end-to-end network for the detection of disease-based asymmetric induced by left and right brain atrophy which consist of 3D CNN Encoder and Symmetry Interactive Transformer (SIT). Following the inter-equal grid block fetch operation, the corresponding left and right hemisphere features are aligned and subsequently fed into the SIT for diagnostic analysis. SIT can help the model focus more on the regions of asymmetry caused by structural changes, thus improving diagnostic performance. We evaluated our method based on the ADNI dataset, and the results show that the method achieves better diagnostic accuracy (92.5\%) compared to several CNN methods and CNNs combined with a general transformer. The visualization results show that our network pays more attention in regions of brain atrophy, especially for the asymmetric pathological characteristics induced by AD, demonstrating the interpretability and effectiveness of the method.

3D brain MRI studies often examine subtle morphometric differences between cohorts that are hard to detect visually. Given the high cost of MRI acquisition, these studies could greatly benefit from image syntheses, particularly counterfactual image generation, as seen in other domains, such as computer vision. However, counterfactual models struggle to produce anatomically plausible MRIs due to the lack of explicit inductive biases to preserve fine-grained anatomical details. This shortcoming arises from the training of the models aiming to optimize for the overall appearance of the images (e.g., via cross-entropy) rather than preserving subtle, yet medically relevant, local variations across subjects. To preserve subtle variations, we propose to explicitly integrate anatomical constraints on a voxel-level as prior into a generative diffusion framework. Called Probabilistic Causal Graph Model (PCGM), the approach captures anatomical constraints via a probabilistic graph module and translates those constraints into spatial binary masks of regions where subtle variations occur. The masks (encoded by a 3D extension of ControlNet) constrain a novel counterfactual denoising UNet, whose encodings are then transferred into high-quality brain MRIs via our 3D diffusion decoder. Extensive experiments on multiple datasets demonstrate that PCGM generates structural brain MRIs of higher quality than several baseline approaches. Furthermore, we show for the first time that brain measurements extracted from counterfactuals (generated by PCGM) replicate the subtle effects of a disease on cortical brain regions previously reported in the neuroscience literature. This achievement is an important milestone in the use of synthetic MRIs in studies investigating subtle morphological differences.

The contractile motion of the heart is strongly determined by the distribution of the fibers that constitute cardiac tissue. Strain analysis informed with the orientation of fibers allows to describe several pathologies that are typically associated with impaired mechanics of the myocardium, such as cardiovascular disease. Several methods have been developed to estimate strain-derived metrics from traditional imaging techniques. However, the physical models underlying these methods do not include fiber mechanics, restricting their capacity to accurately explain cardiac function. In this work, we introduce WarpPINN-fibers, a physics-informed neural network framework to accurately obtain cardiac motion and strains enhanced by fiber information. We train our neural network to satisfy a hyper-elastic model and promote fiber contraction with the goal to predict the deformation field of the heart from cine magnetic resonance images. For this purpose, we build a loss function composed of three terms: a data-similarity loss between the reference and the warped template images, a regularizer enforcing near-incompressibility of cardiac tissue and a fiber-stretch penalization that controls strain in the direction of synthetically produced fibers. We show that our neural network improves the former WarpPINN model and effectively controls fiber stretch in a synthetic phantom experiment. Then, we demonstrate that WarpPINN-fibers outperforms alternative methodologies in landmark-tracking and strain curve prediction for a cine-MRI benchmark with a cohort of 15 healthy volunteers. We expect that our method will enable a more precise quantification of cardiac strains through accurate deformation fields that are consistent with fiber physiology, without requiring imaging techniques more sophisticated than MRI.

High-intensity focused ultrasound (HIFU) is a non-invasive technique for treating uterine fibroids, and the accurate prediction of its therapeutic efficacy depends on precise quantification of the intratumoral heterogeneity. However, existing methods still have limitations in characterizing intratumoral heterogeneity, which restricts the accuracy of efficacy prediction. To this end, this study proposes a deep learning model with a parallel architecture of ResNet and ViT (Res-ViT) to verify whether the synergistic characterization of local texture and global spatial features can improve the accuracy of HIFU efficacy prediction. This study enrolled patients with uterine fibroids who underwent HIFU treatment from Center A (training set: N = 272; internal validation set: N = 92) and Center B (external test set: N = 125). Preoperative T2-weighted magnetic resonance images were used to develop the Res-ViT model for predicting immediate post-treatment non-perfused volume ratio (NPVR) ≥ 80%. Model performance was evaluated using the area under the receiver operating characteristic curve (AUC) and compared against independent Radiomics, ResNet-18, and ViT models. The Res-ViT model outperformed all standalone models across both internal (AUC = 0.895, 95% CI: 0.857-0.987) and external (AUC = 0.853, 95% CI: 0.776-0.921) test sets. SHAP analysis identified the ResNet branch as the predominant decision-making component (feature contribution: 55.4%). The visualization of Gradient-weighted Class Activation Mapping (Grad-CAM) shows that the key regions attended by Res-ViT have higher spatial overlap with the postoperative non-ablated fibroid tissue. The proposed Res-ViT model demonstrates that the fusion strategy of local and global features is an effective method for quantifying uterine fibroid heterogeneity, significantly enhancing the accuracy of HIFU efficacy prediction.

Automatic quantification of intramyocardial motion and strain from tagging MRI remains an important but challenging task. We propose a method using implicit neural representations (INRs), conditioned on learned latent codes, to predict continuous left ventricular (LV) displacement -- without requiring inference-time optimisation. Evaluated on 452 UK Biobank test cases, our method achieved the best tracking accuracy (2.14 mm RMSE) and the lowest combined error in global circumferential (2.86%) and radial (6.42%) strain compared to three deep learning baselines. In addition, our method is $\sim$380$\times$ faster than the most accurate baseline. These results highlight the suitability of INR-based models for accurate and scalable analysis of myocardial strain in large CMR datasets.

Effective preoperative planning requires accurate algorithms for segmenting anatomical structures across diverse datasets, but traditional models struggle with generalization. This study presents a novel machine learning methodology to improve algorithm generalization for 3D anatomical reconstruction beyond breast cancer applications. We processed 120 retrospective breast MRIs (January 2018-June 2023) through three phases: anonymization and manual segmentation of T1-weighted and dynamic contrast-enhanced sequences; co-registration and segmentation of whole breast, fibroglandular tissue, and tumors; and 3D visualization using ITK-SNAP. A human-in-the-loop approach refined segmentations using U-Mamba, designed to generalize across imaging scenarios. Dice similarity coefficient assessed overlap between automated segmentation and ground truth. Clinical relevance was evaluated through clinician and patient interviews. U-Mamba showed strong performance with DSC values of 0.97 ($\pm$0.013) for whole organs, 0.96 ($\pm$0.024) for fibroglandular tissue, and 0.82 ($\pm$0.12) for tumors on T1-weighted images. The model generated accurate 3D reconstructions enabling visualization of complex anatomical features. Clinician interviews indicated improved planning, intraoperative navigation, and decision support. Integration of 3D visualization enhanced patient education, communication, and understanding. This human-in-the-loop machine learning approach successfully generalizes algorithms for 3D reconstruction and anatomical segmentation across patient datasets, offering enhanced visualization for clinicians, improved preoperative planning, and more effective patient education, facilitating shared decision-making and empowering informed patient choices across medical applications.

The generalizability and reproducibility of AI-assisted detection for cerebral aneurysms on 3D time-of-flight MR angiography remain unclear. We aimed to evaluate physician performance using AI assistance, focusing on inter- and intra-user variability, identifying factors influencing performance and clinical implications. In this retrospective study, four state-of-the-art AI models were hyperparameter-optimized on an in-house dataset (2019-2021) and evaluated via 5-fold cross-validation on a public external dataset. The two best-performing models were selected for evaluation on an expert-revised external dataset. saccular aneurysms without prior treatment. Five physicians, grouped by expertise, each performed two AI-assisted evaluations, one with each model. Lesion-wise sensitivity and false positives per case (FPs/case) were calculated for each physician-AI pair and AI models alone. Agreement was assessed using kappa. Aneurysm size comparisons used the Mann-Whitney U test. The in-house dataset included 132 patients with 206 aneurysms (mean size: 4.0 mm); the revised external dataset, 270 patients with 174 aneurysms (mean size: 3.7 mm). Standalone AI achieved 86.8% sensitivity and 0.58 FPs/case. With AI assistance, non-experts achieved 72.1% sensitivity and 0.037 FPs/case; experts, 88.6% and 0.076 FPs/case; the intermediate-level physician, 78.5% and 0.037 FPs/case. Intra-group agreement was 80% for non-experts (kappa: 0.57, 95% CI: 0.54-0.59) and 77.7% for experts (kappa: 0.53, 95% CI: 0.51-0.55). In experts, false positives were smaller than true positives (2.7 vs. 3.8 mm, p < 0.001); no difference in non-experts (p = 0.09). Missed aneurysm locations were mainly model-dependent, while true- and false-positive locations reflected physician expertise. Non-experts more often rejected AI suggestions and added fewer annotations; experts were more conservative and added more. Evaluating AI models in isolation provides an incomplete view of their clinical applicability. Detection performance and patterns differ between standalone AI and AI-assisted use, and are modulated by physician expertise. Rigorous external validation is essential before clinical deployment.

To develop a deep learning-based reconstruction method for highly accelerated 3D time-of-flight MRA (TOF-MRA) that achieves high-quality reconstruction with robust generalization using extremely limited acquired raw data, addressing the challenge of time-consuming acquisition of high-resolution, whole-head angiograms. A novel few-shot learning-based reconstruction framework is proposed, featuring a 3D variational network specifically designed for 3D TOF-MRA that is pre-trained on simulated complex-valued, multi-coil raw k-space datasets synthesized from diverse open-source magnitude images and fine-tuned using only two single-slab experimentally acquired datasets. The proposed approach was evaluated against existing methods on acquired retrospectively undersampled in vivo k-space data from five healthy volunteers and on prospectively undersampled data from two additional subjects. The proposed method achieved superior reconstruction performance on experimentally acquired in vivo data over comparison methods, preserving most fine vessels with minimal artifacts with up to eight-fold acceleration. Compared to other simulation techniques, the proposed method generated more realistic raw k-space data for 3D TOF-MRA. Consistently high-quality reconstructions were also observed on prospectively undersampled data. By leveraging few-shot learning, the proposed method enabled highly accelerated 3D TOF-MRA relying on minimal experimentally acquired data, achieving promising results on both retrospective and prospective in vivo data while outperforming existing methods. Given the challenges of acquiring and sharing large raw k-space datasets, this holds significant promise for advancing research and clinical applications in high-resolution, whole-head 3D TOF-MRA imaging.