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Noise-inspired diffusion model for generalizable low-dose CT reconstruction.

Gao Q, Chen Z, Zeng D, Zhang J, Ma J, Shan H

pubmed logopapersJul 8 2025
The generalization of deep learning-based low-dose computed tomography (CT) reconstruction models to doses unseen in the training data is important and remains challenging. Previous efforts heavily rely on paired data to improve the generalization performance and robustness through collecting either diverse CT data for re-training or a few test data for fine-tuning. Recently, diffusion models have shown promising and generalizable performance in low-dose CT (LDCT) reconstruction, however, they may produce unrealistic structures due to the CT image noise deviating from Gaussian distribution and imprecise prior information from the guidance of noisy LDCT images. In this paper, we propose a noise-inspired diffusion model for generalizable LDCT reconstruction, termed NEED, which tailors diffusion models for noise characteristics of each domain. First, we propose a novel shifted Poisson diffusion model to denoise projection data, which aligns the diffusion process with the noise model in pre-log LDCT projections. Second, we devise a doubly guided diffusion model to refine reconstructed images, which leverages LDCT images and initial reconstructions to more accurately locate prior information and enhance reconstruction fidelity. By cascading these two diffusion models for dual-domain reconstruction, our NEED requires only normal-dose data for training and can be effectively extended to various unseen dose levels during testing via a time step matching strategy. Extensive qualitative, quantitative, and segmentation-based evaluations on two datasets demonstrate that our NEED consistently outperforms state-of-the-art methods in reconstruction and generalization performance. Source code is made available at https://github.com/qgao21/NEED.

HGNet: High-Order Spatial Awareness Hypergraph and Multi-Scale Context Attention Network for Colorectal Polyp Detection

Xiaofang Liu, Lingling Sun, Xuqing Zhang, Yuannong Ye, Bin zhao

arxiv logopreprintJul 7 2025
Colorectal cancer (CRC) is closely linked to the malignant transformation of colorectal polyps, making early detection essential. However, current models struggle with detecting small lesions, accurately localizing boundaries, and providing interpretable decisions. To address these issues, we propose HGNet, which integrates High-Order Spatial Awareness Hypergraph and Multi-Scale Context Attention. Key innovations include: (1) an Efficient Multi-Scale Context Attention (EMCA) module to enhance lesion feature representation and boundary modeling; (2) the deployment of a spatial hypergraph convolution module before the detection head to capture higher-order spatial relationships between nodes; (3) the application of transfer learning to address the scarcity of medical image data; and (4) Eigen Class Activation Map (Eigen-CAM) for decision visualization. Experimental results show that HGNet achieves 94% accuracy, 90.6% recall, and 90% [email protected], significantly improving small lesion differentiation and clinical interpretability. The source code will be made publicly available upon publication of this paper.

Geometric-Guided Few-Shot Dental Landmark Detection with Human-Centric Foundation Model

Anbang Wang, Marawan Elbatel, Keyuan Liu, Lizhuo Lin, Meng Lan, Yanqi Yang, Xiaomeng Li

arxiv logopreprintJul 7 2025
Accurate detection of anatomic landmarks is essential for assessing alveolar bone and root conditions, thereby optimizing clinical outcomes in orthodontics, periodontics, and implant dentistry. Manual annotation of landmarks on cone-beam computed tomography (CBCT) by dentists is time-consuming, labor-intensive, and subject to inter-observer variability. Deep learning-based automated methods present a promising approach to streamline this process efficiently. However, the scarcity of training data and the high cost of expert annotations hinder the adoption of conventional deep learning techniques. To overcome these challenges, we introduce GeoSapiens, a novel few-shot learning framework designed for robust dental landmark detection using limited annotated CBCT of anterior teeth. Our GeoSapiens framework comprises two key components: (1) a robust baseline adapted from Sapiens, a foundational model that has achieved state-of-the-art performance in human-centric vision tasks, and (2) a novel geometric loss function that improves the model's capacity to capture critical geometric relationships among anatomical structures. Experiments conducted on our collected dataset of anterior teeth landmarks revealed that GeoSapiens surpassed existing landmark detection methods, outperforming the leading approach by an 8.18% higher success detection rate at a strict 0.5 mm threshold-a standard widely recognized in dental diagnostics. Code is available at: https://github.com/xmed-lab/GeoSapiens.

MedGemma Technical Report

Andrew Sellergren, Sahar Kazemzadeh, Tiam Jaroensri, Atilla Kiraly, Madeleine Traverse, Timo Kohlberger, Shawn Xu, Fayaz Jamil, Cían Hughes, Charles Lau, Justin Chen, Fereshteh Mahvar, Liron Yatziv, Tiffany Chen, Bram Sterling, Stefanie Anna Baby, Susanna Maria Baby, Jeremy Lai, Samuel Schmidgall, Lu Yang, Kejia Chen, Per Bjornsson, Shashir Reddy, Ryan Brush, Kenneth Philbrick, Howard Hu, Howard Yang, Richa Tiwari, Sunny Jansen, Preeti Singh, Yun Liu, Shekoofeh Azizi, Aishwarya Kamath, Johan Ferret, Shreya Pathak, Nino Vieillard, Ramona Merhej, Sarah Perrin, Tatiana Matejovicova, Alexandre Ramé, Morgane Riviere, Louis Rouillard, Thomas Mesnard, Geoffrey Cideron, Jean-bastien Grill, Sabela Ramos, Edouard Yvinec, Michelle Casbon, Elena Buchatskaya, Jean-Baptiste Alayrac, Dmitry Lepikhin, Vlad Feinberg, Sebastian Borgeaud, Alek Andreev, Cassidy Hardin, Robert Dadashi, Léonard Hussenot, Armand Joulin, Olivier Bachem, Yossi Matias, Katherine Chou, Avinatan Hassidim, Kavi Goel, Clement Farabet, Joelle Barral, Tris Warkentin, Jonathon Shlens, David Fleet, Victor Cotruta, Omar Sanseviero, Gus Martins, Phoebe Kirk, Anand Rao, Shravya Shetty, David F. Steiner, Can Kirmizibayrak, Rory Pilgrim, Daniel Golden, Lin Yang

arxiv logopreprintJul 7 2025
Artificial intelligence (AI) has significant potential in healthcare applications, but its training and deployment faces challenges due to healthcare's diverse data, complex tasks, and the need to preserve privacy. Foundation models that perform well on medical tasks and require less task-specific tuning data are critical to accelerate the development of healthcare AI applications. We introduce MedGemma, a collection of medical vision-language foundation models based on Gemma 3 4B and 27B. MedGemma demonstrates advanced medical understanding and reasoning on images and text, significantly exceeding the performance of similar-sized generative models and approaching the performance of task-specific models, while maintaining the general capabilities of the Gemma 3 base models. For out-of-distribution tasks, MedGemma achieves 2.6-10% improvement on medical multimodal question answering, 15.5-18.1% improvement on chest X-ray finding classification, and 10.8% improvement on agentic evaluations compared to the base models. Fine-tuning MedGemma further improves performance in subdomains, reducing errors in electronic health record information retrieval by 50% and reaching comparable performance to existing specialized state-of-the-art methods for pneumothorax classification and histopathology patch classification. We additionally introduce MedSigLIP, a medically-tuned vision encoder derived from SigLIP. MedSigLIP powers the visual understanding capabilities of MedGemma and as an encoder achieves comparable or better performance than specialized medical image encoders. Taken together, the MedGemma collection provides a strong foundation of medical image and text capabilities, with potential to significantly accelerate medical research and development of downstream applications. The MedGemma collection, including tutorials and model weights, can be found at https://goo.gle/medgemma.

MedGemma Technical Report

Andrew Sellergren, Sahar Kazemzadeh, Tiam Jaroensri, Atilla Kiraly, Madeleine Traverse, Timo Kohlberger, Shawn Xu, Fayaz Jamil, Cían Hughes, Charles Lau, Justin Chen, Fereshteh Mahvar, Liron Yatziv, Tiffany Chen, Bram Sterling, Stefanie Anna Baby, Susanna Maria Baby, Jeremy Lai, Samuel Schmidgall, Lu Yang, Kejia Chen, Per Bjornsson, Shashir Reddy, Ryan Brush, Kenneth Philbrick, Howard Hu, Howard Yang, Richa Tiwari, Sunny Jansen, Preeti Singh, Yun Liu, Shekoofeh Azizi, Aishwarya Kamath, Johan Ferret, Shreya Pathak, Nino Vieillard, Ramona Merhej, Sarah Perrin, Tatiana Matejovicova, Alexandre Ramé, Morgane Riviere, Louis Rouillard, Thomas Mesnard, Geoffrey Cideron, Jean-bastien Grill, Sabela Ramos, Edouard Yvinec, Michelle Casbon, Elena Buchatskaya, Jean-Baptiste Alayrac, Dmitry, Lepikhin, Vlad Feinberg, Sebastian Borgeaud, Alek Andreev, Cassidy Hardin, Robert Dadashi, Léonard Hussenot, Armand Joulin, Olivier Bachem, Yossi Matias, Katherine Chou, Avinatan Hassidim, Kavi Goel, Clement Farabet, Joelle Barral, Tris Warkentin, Jonathon Shlens, David Fleet, Victor Cotruta, Omar Sanseviero, Gus Martins, Phoebe Kirk, Anand Rao, Shravya Shetty, David F. Steiner, Can Kirmizibayrak, Rory Pilgrim, Daniel Golden, Lin Yang

arxiv logopreprintJul 7 2025
Artificial intelligence (AI) has significant potential in healthcare applications, but its training and deployment faces challenges due to healthcare's diverse data, complex tasks, and the need to preserve privacy. Foundation models that perform well on medical tasks and require less task-specific tuning data are critical to accelerate the development of healthcare AI applications. We introduce MedGemma, a collection of medical vision-language foundation models based on Gemma 3 4B and 27B. MedGemma demonstrates advanced medical understanding and reasoning on images and text, significantly exceeding the performance of similar-sized generative models and approaching the performance of task-specific models, while maintaining the general capabilities of the Gemma 3 base models. For out-of-distribution tasks, MedGemma achieves 2.6-10% improvement on medical multimodal question answering, 15.5-18.1% improvement on chest X-ray finding classification, and 10.8% improvement on agentic evaluations compared to the base models. Fine-tuning MedGemma further improves performance in subdomains, reducing errors in electronic health record information retrieval by 50% and reaching comparable performance to existing specialized state-of-the-art methods for pneumothorax classification and histopathology patch classification. We additionally introduce MedSigLIP, a medically-tuned vision encoder derived from SigLIP. MedSigLIP powers the visual understanding capabilities of MedGemma and as an encoder achieves comparable or better performance than specialized medical image encoders. Taken together, the MedGemma collection provides a strong foundation of medical image and text capabilities, with potential to significantly accelerate medical research and development of downstream applications. The MedGemma collection, including tutorials and model weights, can be found at https://goo.gle/medgemma.

SV-DRR: High-Fidelity Novel View X-Ray Synthesis Using Diffusion Model

Chun Xie, Yuichi Yoshii, Itaru Kitahara

arxiv logopreprintJul 7 2025
X-ray imaging is a rapid and cost-effective tool for visualizing internal human anatomy. While multi-view X-ray imaging provides complementary information that enhances diagnosis, intervention, and education, acquiring images from multiple angles increases radiation exposure and complicates clinical workflows. To address these challenges, we propose a novel view-conditioned diffusion model for synthesizing multi-view X-ray images from a single view. Unlike prior methods, which are limited in angular range, resolution, and image quality, our approach leverages the Diffusion Transformer to preserve fine details and employs a weak-to-strong training strategy for stable high-resolution image generation. Experimental results demonstrate that our method generates higher-resolution outputs with improved control over viewing angles. This capability has significant implications not only for clinical applications but also for medical education and data extension, enabling the creation of diverse, high-quality datasets for training and analysis. Our code is available at GitHub.

ViTaL: A Multimodality Dataset and Benchmark for Multi-pathological Ovarian Tumor Recognition

You Zhou, Lijiang Chen, Guangxia Cui, Wenpei Bai, Yu Guo, Shuchang Lyu, Guangliang Cheng, Qi Zhao

arxiv logopreprintJul 6 2025
Ovarian tumor, as a common gynecological disease, can rapidly deteriorate into serious health crises when undetected early, thus posing significant threats to the health of women. Deep neural networks have the potential to identify ovarian tumors, thereby reducing mortality rates, but limited public datasets hinder its progress. To address this gap, we introduce a vital ovarian tumor pathological recognition dataset called \textbf{ViTaL} that contains \textbf{V}isual, \textbf{T}abular and \textbf{L}inguistic modality data of 496 patients across six pathological categories. The ViTaL dataset comprises three subsets corresponding to different patient data modalities: visual data from 2216 two-dimensional ultrasound images, tabular data from medical examinations of 496 patients, and linguistic data from ultrasound reports of 496 patients. It is insufficient to merely distinguish between benign and malignant ovarian tumors in clinical practice. To enable multi-pathology classification of ovarian tumor, we propose a ViTaL-Net based on the Triplet Hierarchical Offset Attention Mechanism (THOAM) to minimize the loss incurred during feature fusion of multi-modal data. This mechanism could effectively enhance the relevance and complementarity between information from different modalities. ViTaL-Net serves as a benchmark for the task of multi-pathology, multi-modality classification of ovarian tumors. In our comprehensive experiments, the proposed method exhibited satisfactory performance, achieving accuracies exceeding 90\% on the two most common pathological types of ovarian tumor and an overall performance of 85\%. Our dataset and code are available at https://github.com/GGbond-study/vitalnet.

FB-Diff: Fourier Basis-guided Diffusion for Temporal Interpolation of 4D Medical Imaging

Xin You, Runze Yang, Chuyan Zhang, Zhongliang Jiang, Jie Yang, Nassir Navab

arxiv logopreprintJul 6 2025
The temporal interpolation task for 4D medical imaging, plays a crucial role in clinical practice of respiratory motion modeling. Following the simplified linear-motion hypothesis, existing approaches adopt optical flow-based models to interpolate intermediate frames. However, realistic respiratory motions should be nonlinear and quasi-periodic with specific frequencies. Intuited by this property, we resolve the temporal interpolation task from the frequency perspective, and propose a Fourier basis-guided Diffusion model, termed FB-Diff. Specifically, due to the regular motion discipline of respiration, physiological motion priors are introduced to describe general characteristics of temporal data distributions. Then a Fourier motion operator is elaborately devised to extract Fourier bases by incorporating physiological motion priors and case-specific spectral information in the feature space of Variational Autoencoder. Well-learned Fourier bases can better simulate respiratory motions with motion patterns of specific frequencies. Conditioned on starting and ending frames, the diffusion model further leverages well-learned Fourier bases via the basis interaction operator, which promotes the temporal interpolation task in a generative manner. Extensive results demonstrate that FB-Diff achieves state-of-the-art (SOTA) perceptual performance with better temporal consistency while maintaining promising reconstruction metrics. Codes are available.

Hybrid-View Attention for csPCa Classification in TRUS

Zetian Feng, Juan Fu, Xuebin Zou, Hongsheng Ye, Hong Wu, Jianhua Zhou, Yi Wang

arxiv logopreprintJul 4 2025
Prostate cancer (PCa) is a leading cause of cancer-related mortality in men, and accurate identification of clinically significant PCa (csPCa) is critical for timely intervention. Transrectal ultrasound (TRUS) is widely used for prostate biopsy; however, its low contrast and anisotropic spatial resolution pose diagnostic challenges. To address these limitations, we propose a novel hybrid-view attention (HVA) network for csPCa classification in 3D TRUS that leverages complementary information from transverse and sagittal views. Our approach integrates a CNN-transformer hybrid architecture, where convolutional layers extract fine-grained local features and transformer-based HVA models global dependencies. Specifically, the HVA comprises intra-view attention to refine features within a single view and cross-view attention to incorporate complementary information across views. Furthermore, a hybrid-view adaptive fusion module dynamically aggregates features along both channel and spatial dimensions, enhancing the overall representation. Experiments are conducted on an in-house dataset containing 590 subjects who underwent prostate biopsy. Comparative and ablation results prove the efficacy of our method. The code is available at https://github.com/mock1ngbrd/HVAN.

SAMed-2: Selective Memory Enhanced Medical Segment Anything Model

Zhiling Yan, Sifan Song, Dingjie Song, Yiwei Li, Rong Zhou, Weixiang Sun, Zhennong Chen, Sekeun Kim, Hui Ren, Tianming Liu, Quanzheng Li, Xiang Li, Lifang He, Lichao Sun

arxiv logopreprintJul 4 2025
Recent "segment anything" efforts show promise by learning from large-scale data, but adapting such models directly to medical images remains challenging due to the complexity of medical data, noisy annotations, and continual learning requirements across diverse modalities and anatomical structures. In this work, we propose SAMed-2, a new foundation model for medical image segmentation built upon the SAM-2 architecture. Specifically, we introduce a temporal adapter into the image encoder to capture image correlations and a confidence-driven memory mechanism to store high-certainty features for later retrieval. This memory-based strategy counters the pervasive noise in large-scale medical datasets and mitigates catastrophic forgetting when encountering new tasks or modalities. To train and evaluate SAMed-2, we curate MedBank-100k, a comprehensive dataset spanning seven imaging modalities and 21 medical segmentation tasks. Our experiments on both internal benchmarks and 10 external datasets demonstrate superior performance over state-of-the-art baselines in multi-task scenarios. The code is available at: https://github.com/ZhilingYan/Medical-SAM-Bench.
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