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A self-supervised multimodal deep learning approach to differentiate post-radiotherapy progression from pseudoprogression in glioblastoma.

Gomaa A, Huang Y, Stephan P, Breininger K, Frey B, Dörfler A, Schnell O, Delev D, Coras R, Donaubauer AJ, Schmitter C, Stritzelberger J, Semrau S, Maier A, Bayer S, Schönecker S, Heiland DH, Hau P, Gaipl US, Bert C, Fietkau R, Schmidt MA, Putz F

pubmed logopapersMay 17 2025
Accurate differentiation of pseudoprogression (PsP) from True Progression (TP) following radiotherapy (RT) in glioblastoma patients is crucial for optimal treatment planning. However, this task remains challenging due to the overlapping imaging characteristics of PsP and TP. This study therefore proposes a multimodal deep-learning approach utilizing complementary information from routine anatomical MR images, clinical parameters, and RT treatment planning information for improved predictive accuracy. The approach utilizes a self-supervised Vision Transformer (ViT) to encode multi-sequence MR brain volumes to effectively capture both global and local context from the high dimensional input. The encoder is trained in a self-supervised upstream task on unlabeled glioma MRI datasets from the open BraTS2021, UPenn-GBM, and UCSF-PDGM datasets (n = 2317 MRI studies) to generate compact, clinically relevant representations from FLAIR and T1 post-contrast sequences. These encoded MR inputs are then integrated with clinical data and RT treatment planning information through guided cross-modal attention, improving progression classification accuracy. This work was developed using two datasets from different centers: the Burdenko Glioblastoma Progression Dataset (n = 59) for training and validation, and the GlioCMV progression dataset from the University Hospital Erlangen (UKER) (n = 20) for testing. The proposed method achieved competitive performance, with an AUC of 75.3%, outperforming the current state-of-the-art data-driven approaches. Importantly, the proposed approach relies solely on readily available anatomical MRI sequences, clinical data, and RT treatment planning information, enhancing its clinical feasibility. The proposed approach addresses the challenge of limited data availability for PsP and TP differentiation and could allow for improved clinical decision-making and optimized treatment plans for glioblastoma patients.

ML-Driven Alzheimer 's disease prediction: A deep ensemble modeling approach.

Jumaili MLF, Sonuç E

pubmed logopapersMay 17 2025
Alzheimer's disease (AD) is a progressive neurological disorder characterized by cognitive decline due to brain cell death, typically manifesting later in life.Early and accurate detection is critical for effective disease management and treatment. This study proposes an ensemble learning framework that combines five deep learning architectures (VGG16, VGG19, ResNet50, InceptionV3, and EfficientNetB7) to improve the accuracy of AD diagnosis. We use a comprehensive dataset of 3,714 MRI brain scans collected from specialized clinics in Iraq, categorized into three classes: NonDemented (834 images), MildDemented (1,824 images), and VeryDemented (1,056 images). The proposed voting ensemble model achieves a diagnostic accuracy of 99.32% on our dataset. The effectiveness of the model is further validated on two external datasets: OASIS (achieving 86.6% accuracy) and ADNI (achieving 99.5% accuracy), demonstrating competitive performance compared to existing approaches. Moreover, the proposed model exhibits high precision and recall across all stages of dementia, providing a reliable and robust tool for early AD detection. This study highlights the effectiveness of ensemble learning in AD diagnosis and shows promise for clinical applications.

Machine learning prediction of pathological complete response to neoadjuvant chemotherapy with peritumoral breast tumor ultrasound radiomics: compare with intratumoral radiomics and clinicopathologic predictors.

Yao J, Zhou W, Jia X, Zhu Y, Chen X, Zhan W, Zhou J

pubmed logopapersMay 16 2025
Noninvasive, accurate and novel approaches to predict patients who will achieve pathological complete response (pCR) after neoadjuvant chemotherapy (NAC) could assist treatment strategies. The aim of this study was to explore the application of machine learning (ML) based peritumoral ultrasound radiomics signature (PURS), compared with intratumoral radiomics (IURS) and clinicopathologic factors, for early prediction of pCR. We analyzed 358 locally advanced breast cancer patients (250 in the training set and 108 in the test set), who accepted NAC and post NAC surgery at our institution. The clinical and pathological data were analyzed using the independent t test and the Chi-square test to determine the factors associated with pCR. The PURS and IURS of baseline breast tumors were extracted by using 3D-slicer and PyRadiomics software. Five ML classifiers including linear discriminant analysis (LDA), support vector machine (SVM), random forest (RF), logistic regression (LR), and adaptive boosting (AdaBoost) were applied to construct radiomics predictive models. The performance of PURS, IURS models and clinicopathologic predictors were assessed with respect to sensitivity, specificity, accuracy and the areas under the curve (AUCs). Ninety-seven patients achieved pCR. The clinicopathologic predictors obtained an AUC of 0.759. Among PURS models, the RF classifier achieved better efficacy (AUC of 0.889) than LR (0.849), AdaBoost (0.823), SVM (0.746) and LDA (0.732). The RF classifier also obtained a maximum AUC of 0.931 than 0.920 (AdaBoost), 0.875 (LR), 0.825 (SVM), and 0.798 (LDA) in IURS models in the test set. The RF based PURS yielded higher predictive ability (AUC 0.889; 95% CI 0.814, 0.947) than clinicopathologic factors (AUC 0.759; 95% CI 0.657, 0.861; p < 0.05), but lower efficacy compared with IURS (AUC 0.931; 95% CI 0.865, 0.980; p < 0.05). The peritumoral US radiomics, as a novel potential biomarker, can assist clinical therapy decisions.

Development and validation of clinical-radiomics deep learning model based on MRI for endometrial cancer molecular subtypes classification.

Yue W, Han R, Wang H, Liang X, Zhang H, Li H, Yang Q

pubmed logopapersMay 16 2025
This study aimed to develop and validate a clinical-radiomics deep learning (DL) model based on MRI for endometrial cancer (EC) molecular subtypes classification. This multicenter retrospective study included EC patients undergoing surgery, MRI, and molecular pathology diagnosis across three institutions from January 2020 to March 2024. Patients were divided into training, internal, and external validation cohorts. A total of 386 handcrafted radiomics features were extracted from each MR sequence, and MoCo-v2 was employed for contrastive self-supervised learning to extract 2048 DL features per patient. Feature selection integrated selected features into 12 machine learning methods. Model performance was evaluated with the AUC. A total of 526 patients were included (mean age, 55.01 ± 11.07). The radiomics model and clinical model demonstrated comparable performance across the internal and external validation cohorts, with macro-average AUCs of 0.70 vs 0.69 and 0.70 vs 0.67 (p = 0.51), respectively. The radiomics DL model, compared to the radiomics model, improved AUCs for POLEmut (0.68 vs 0.79), NSMP (0.71 vs 0.74), and p53abn (0.76 vs 0.78) in the internal validation (p = 0.08). The clinical-radiomics DL Model outperformed both the clinical model and radiomics DL model (macro-average AUC = 0.79 vs 0.69 and 0.73, in the internal validation [p = 0.02], 0.74 vs 0.67 and 0.69 in the external validation [p = 0.04]). The clinical-radiomics DL model based on MRI effectively distinguished EC molecular subtypes and demonstrated strong potential, with robust validation across multiple centers. Future research should explore larger datasets to further uncover DL's potential. Our clinical-radiomics DL model based on MRI has the potential to distinguish EC molecular subtypes. This insight aids in guiding clinicians in tailoring individualized treatments for EC patients. Accurate classification of EC molecular subtypes is crucial for prognostic risk assessment. The clinical-radiomics DL model outperformed both the clinical model and the radiomics DL model. The MRI features exhibited better diagnostic performance for POLEmut and p53abn.

Lightweight hybrid transformers-based dyslexia detection using cross-modality data.

Sait ARW, Alkhurayyif Y

pubmed logopapersMay 16 2025
Early and precise diagnosis of dyslexia is crucial for implementing timely intervention to reduce its effects. Timely identification can improve the individual's academic and cognitive performance. Traditional dyslexia detection (DD) relies on lengthy, subjective, restricted behavioral evaluations and interviews. Due to the limitations, deep learning (DL) models have been explored to improve DD by analyzing complex neurological, behavioral, and visual data. DL architectures, including convolutional neural networks (CNNs) and vision transformers (ViTs), encounter challenges in extracting meaningful patterns from cross-modality data. The lack of model interpretability and limited computational power restricts these models' generalizability across diverse datasets. To overcome these limitations, we propose an innovative model for DD using magnetic resonance imaging (MRI), electroencephalography (EEG), and handwriting images. We introduce a model, leveraging hybrid transformer-based feature extraction, including SWIN-Linformer for MRI, LeViT-Performer for handwriting images, and graph transformer networks (GTNs) with multi-attention mechanisms for EEG data. A multi-modal attention-based feature fusion network was used to fuse the extracted features in order to guarantee the integration of key multi-modal features. We enhance Dartbooster XGBoost (DXB)-based classification using Bayesian optimization with Hyperband (BOHB) algorithm. In order to reduce computational overhead, we employ a quantization-aware training technique. The local interpretable model-agnostic explanations (LIME) technique and gradient-weighted class activation mapping (Grad-CAM) were adopted to enable model interpretability. Five public repositories were used to train and test the proposed model. The experimental outcomes demonstrated that the proposed model achieves an accuracy of 99.8% with limited computational overhead, outperforming baseline models. It sets a novel standard for DD, offering potential for early identification and timely intervention. In the future, advanced feature fusion and quantization techniques can be utilized to achieve optimal results in resource-constrained environments.

Diagnostic challenges of carpal tunnel syndrome in patients with congenital thenar hypoplasia: a comprehensive review.

Naghizadeh H, Salkhori O, Akrami S, Khabiri SS, Arabzadeh A

pubmed logopapersMay 16 2025
Carpal Tunnel Syndrome (CTS) is the most common entrapment neuropathy, frequently presenting with pain, numbness, and muscle weakness due to median nerve compression. However, diagnosing CTS becomes particularly challenging in patients with Congenital Thenar Hypoplasia (CTH), a rare congenital anomaly characterized by underdeveloped thenar muscles. The overlapping symptoms of CTH and CTS, such as thumb weakness, impaired hand function, and thenar muscle atrophy, can obscure the identification of median nerve compression. This review highlights the diagnostic complexities arising from this overlap and evaluates existing clinical, imaging, and electrophysiological assessment methods. While traditional diagnostic tests, including Phalen's and Tinel's signs, exhibit limited sensitivity in CTH patients, advanced imaging modalities like ultrasonography (US), magnetic resonance imaging (MRI), and diffusion tensor imaging (DTI) provide valuable insights into structural abnormalities. Additionally, emerging technologies such as artificial intelligence (AI) enhance diagnostic precision by automating imaging analysis and identifying subtle nerve alterations. Combining clinical history, functional assessments, and advanced imaging, an interdisciplinary approach is critical to differentiate between CTH-related anomalies and CTS accurately. This comprehensive review underscores the need for tailored diagnostic protocols to improve early detection, personalised management, and outcomes for this unique patient population.

Residual self-attention vision transformer for detecting acquired vitelliform lesions and age-related macular drusen.

Powroznik P, Skublewska-Paszkowska M, Nowomiejska K, Gajda-Deryło B, Brinkmann M, Concilio M, Toro MD, Rejdak R

pubmed logopapersMay 16 2025
Retinal diseases recognition is still a challenging task. Many deep learning classification methods and their modifications have been developed for medical imaging. Recently, Vision Transformers (ViT) have been applied for classification of retinal diseases with great success. Therefore, in this study a novel method was proposed, the Residual Self-Attention Vision Transformer (RS-A ViT), for automatic detection of acquired vitelliform lesions (AVL), macular drusen as well as distinguishing them from healthy cases. The Residual Self-Attention module instead of Self-Attention was applied in order to improve model's performance. The new tool outperforms the classical deep learning methods, like EfficientNet, InceptionV3, ResNet50 and VGG16. The RS-A ViT method also exceeds the ViT algorithm, reaching 96.62%. For the purpose of this research a new dataset was created that combines AVL data gathered from two research centers and drusen as well as normal cases from the OCT dataset. The augmentation methods were applied in order to enlarge the samples. The Grad-CAM interpretability method indicated that this model analyses the appropriate areas in optical coherence tomography images in order to detect retinal diseases. The results proved that the presented RS-A ViT model has a great potential in classification retinal disorders with high accuracy and thus may be applied as a supportive tool for ophthalmologists.

Multicenter development of a deep learning radiomics and dosiomics nomogram to predict radiation pneumonia risk in non-small cell lung cancer.

Wang X, Zhang A, Yang H, Zhang G, Ma J, Ye S, Ge S

pubmed logopapersMay 16 2025
Radiation pneumonia (RP) is the most common side effect of chest radiotherapy, and can affect patients' quality of life. This study aimed to establish a combined model of radiomics, dosiomics, deep learning (DL) based on simulated location CT and dosimetry images combining with clinical parameters to improve the predictive ability of ≥ 2 grade RP (RP2) in patients with non-small cell lung cancer (NSCLC). This study retrospectively collected 245 patients with NSCLC who received radiotherapy from three hospitals. 162 patients from Hospital I were randomly divided into training cohort and internal validation cohort according to 7:3. 83 patients from two other hospitals served as an external validation cohort. Multivariate analysis was used to screen independent clinical predictors and establish clinical model (CM). The radiomic and dosiomics (RD) features and DL features were extracted from simulated location CT and dosimetry images based on the region of interest (ROI) of total lung-PTV (TL-PTV). The features screened by the t-test and least absolute shrinkage and selection operator (LASSO) were used to construct the RD and DL model, and RD-score and DL-score were calculated. RD-score, DL-score and independent clinical features were combined to establish deep learning radiomics and dosiomics nomogram (DLRDN). The model performance was evaluated by area under the curve (AUC). Three clinical factors, including V20, V30, and mean lung dose (MLD), were used to establish the CM. 7 RD features including 4 radiomics features and 3 dosiomics features were selected to establish RD model. 10 DL features were selected to establish DL model. Among the different models, DLRDN showed the best predictions, with the AUCs of 0.891 (0.826-0.957), 0.825 (0.693-0.957), and 0.801 (0.698-0.904) in the training cohort, internal validation cohort and external validation cohort, respectively. DCA showed that DLRDN had a higher overall net benefit than other models. The calibration curve showed that the predicted value of DLRDN was in good agreement with the actual value. Overall, radiomics, dosiomics, and DL features based on simulated location CT and dosimetry images have the potential to help predict RP2. The combination of multi-dimensional data produced the optimal predictive model, which could provide guidance for clinicians.

Deep learning progressive distill for predicting clinical response to conversion therapy from preoperative CT images of advanced gastric cancer patients.

Han S, Zhang T, Deng W, Han S, Wu H, Jiang B, Xie W, Chen Y, Deng T, Wen X, Liu N, Fan J

pubmed logopapersMay 16 2025
Identifying patients suitable for conversion therapy through early non-invasive screening is crucial for tailoring treatment in advanced gastric cancer (AGC). This study aimed to develop and validate a deep learning method, utilizing preoperative computed tomography (CT) images, to predict the response to conversion therapy in AGC patients. This retrospective study involved 140 patients. We utilized Progressive Distill (PD) methodology to construct a deep learning model for predicting clinical response to conversion therapy based on preoperative CT images. Patients in the training set (n = 112) and in the test set (n = 28) were sourced from The First Affiliated Hospital of Wenzhou Medical University between September 2017 and November 2023. Our PD models' performance was compared with baseline models and those utilizing Knowledge Distillation (KD), with evaluation metrics including accuracy, sensitivity, specificity, receiver operating characteristic curves, areas under the receiver operating characteristic curve (AUCs), and heat maps. The PD model exhibited the best performance, demonstrating robust discrimination of clinical response to conversion therapy with an AUC of 0.99 and accuracy of 99.11% in the training set, and 0.87 AUC and 85.71% accuracy in the test set. Sensitivity and specificity were 97.44% and 100% respectively in the training set, 85.71% and 85.71% each in the test set, suggesting absence of discernible bias. The deep learning model of PD method accurately predicts clinical response to conversion therapy in AGC patients. Further investigation is warranted to assess its clinical utility alongside clinicopathological parameters.
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