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GUSL: A Novel and Efficient Machine Learning Model for Prostate Segmentation on MRI

Jiaxin Yang, Vasileios Magoulianitis, Catherine Aurelia Christie Alexander, Jintang Xue, Masatomo Kaneko, Giovanni Cacciamani, Andre Abreu, Vinay Duddalwar, C. -C. Jay Kuo, Inderbir S. Gill, Chrysostomos Nikias

arxiv logopreprintJun 30 2025
Prostate and zonal segmentation is a crucial step for clinical diagnosis of prostate cancer (PCa). Computer-aided diagnosis tools for prostate segmentation are based on the deep learning (DL) paradigm. However, deep neural networks are perceived as "black-box" solutions by physicians, thus making them less practical for deployment in the clinical setting. In this paper, we introduce a feed-forward machine learning model, named Green U-shaped Learning (GUSL), suitable for medical image segmentation without backpropagation. GUSL introduces a multi-layer regression scheme for coarse-to-fine segmentation. Its feature extraction is based on a linear model, which enables seamless interpretability during feature extraction. Also, GUSL introduces a mechanism for attention on the prostate boundaries, which is an error-prone region, by employing regression to refine the predictions through residue correction. In addition, a two-step pipeline approach is used to mitigate the class imbalance, an issue inherent in medical imaging problems. After conducting experiments on two publicly available datasets and one private dataset, in both prostate gland and zonal segmentation tasks, GUSL achieves state-of-the-art performance among other DL-based models. Notably, GUSL features a very energy-efficient pipeline, since it has a model size several times smaller and less complexity than the rest of the solutions. In all datasets, GUSL achieved a Dice Similarity Coefficient (DSC) performance greater than $0.9$ for gland segmentation. Considering also its lightweight model size and transparency in feature extraction, it offers a competitive and practical package for medical imaging applications.

Efficient Cerebral Infarction Segmentation Using U-Net and U-Net3 + Models.

Yuce E, Sahin ME, Ulutas H, Erkoç MF

pubmed logopapersJun 30 2025
Cerebral infarction remains a leading cause of mortality and long-term disability globally, underscoring the critical importance of early diagnosis and timely intervention to enhance patient outcomes. This study introduces a novel approach to cerebral infarction segmentation using a novel dataset comprising MRI scans of 110 patients, retrospectively collected from Yozgat Bozok University Research Hospital. Two convolutional neural network architectures, the basic U-Net and the advanced U-Net3 + , are employed to segment infarction regions with high precision. Ground-truth annotations are generated under the supervision of an experienced radiologist, and data augmentation techniques are applied to address dataset limitations, resulting in 6732 balanced images for training, validation, and testing. Performance evaluation is conducted using metrics such as the dice score, Intersection over Union (IoU), pixel accuracy, and specificity. The basic U-Net achieved superior performance with a dice score of 0.8947, a mean IoU of 0.8798, a pixel accuracy of 0.9963, and a specificity of 0.9984, outperforming U-Net3 + despite its simpler architecture. U-Net3 + , with its complex structure and advanced features, delivered competitive results, highlighting the potential trade-off between model complexity and performance in medical imaging tasks. This study underscores the significance of leveraging deep learning for precise and efficient segmentation of cerebral infarction. The results demonstrate the capability of CNN-based architectures to support medical decision-making, offering a promising pathway for advancing stroke diagnosis and treatment planning.

Thin-slice T<sub>2</sub>-weighted images and deep-learning-based super-resolution reconstruction: improved preoperative assessment of vascular invasion for pancreatic ductal adenocarcinoma.

Zhou X, Wu Y, Qin Y, Song C, Wang M, Cai H, Zhao Q, Liu J, Wang J, Dong Z, Luo Y, Peng Z, Feng ST

pubmed logopapersJun 30 2025
To evaluate the efficacy of thin-slice T<sub>2</sub>-weighted imaging (T<sub>2</sub>WI) and super-resolution reconstruction (SRR) for preoperative assessment of vascular invasion in pancreatic ductal adenocarcinoma (PDAC). Ninety-five PDACs with preoperative MRI were retrospectively enrolled as a training set, with non-reconstructed T<sub>2</sub>WI (NRT<sub>2</sub>) in different slice thicknesses (NRT<sub>2</sub>-3, 3 mm; NRT<sub>2</sub>-5, ≥ 5 mm). A prospective test set was collected with NRT<sub>2</sub>-5 (n = 125) only. A deep-learning network was employed to generate reconstructed super-resolution T<sub>2</sub>WI (SRT<sub>2</sub>) in different slice thicknesses (SRT<sub>2</sub>-3, 3 mm; SRT<sub>2</sub>-5, ≥ 5 mm). Image quality was assessed, including the signal-to-noise ratio (SNR), contrast-to-noise ratio (CNR), and signal-intensity ratio (SIR<sub>t/p</sub>, tumor/pancreas; SIR<sub>t/b</sub>, tumor/background). Diagnostic efficacy for vascular invasion was evaluated using the area under the curve (AUC) and compared across different slice thicknesses before and after reconstruction. SRT<sub>2</sub>-5 demonstrated higher SNR and SIR<sub>t/p</sub> compared to NRT<sub>2</sub>-5 (74.18 vs 72.46; 1.42 vs 1.30; p < 0.05). SRT<sub>2</sub>-3 showed increased SIR<sub>t/p</sub> and SIR<sub>t/b</sub> over NRT<sub>2</sub>-3 (1.35 vs 1.31; 2.73 vs 2.58; p < 0.05). SRT<sub>2</sub>-5 showed higher CNR, SIR<sub>t/p</sub> and SIR<sub>t/b</sub> than NRT<sub>2</sub>-3 (p < 0.05). NRT<sub>2</sub>-3 outperformed NRT<sub>2</sub>-5 in evaluating venous invasion (AUC: 0.732 vs 0.597, p = 0.021). SRR improved venous assessment (AUC: NRT<sub>2</sub>-3, 0.927 vs 0.732; NRT<sub>2</sub>-5, 0.823 vs 0.597; p < 0.05), and SRT<sub>2</sub>-5 exhibits comparable efficacy to NRT<sub>2</sub>-3 in venous assessment (AUC: 0.823 vs 0.732, p = 0.162). Thin-slice T<sub>2</sub>WI and SRR effectively improve the image quality and diagnostic efficacy for assessing venous invasion in PDAC. Thick-slice T<sub>2</sub>WI with SRR is a potential alternative to thin-slice T<sub>2</sub>WI. Both thin-slice T<sub>2</sub>-WI and SRR effectively improve image quality and diagnostic performance, providing valuable options for optimizing preoperative vascular assessment in PDAC. Non-invasive and accurate assessment of vascular invasion supports treatment planning and avoids futile surgery. Vascular invasion evaluation is critical for the surgical eligibility of PDAC. SRR improved image quality and vascular assessment in T<sub>2</sub>WI. Utilizing thin-slice T<sub>2</sub>WI and SRR aids in clinical decision making for PDAC.

Development and validation of a prognostic prediction model for lumbar-disc herniation based on machine learning and fusion of clinical text data and radiomic features.

Wang Z, Zhang H, Li Y, Zhang X, Liu J, Ren Z, Qin D, Zhao X

pubmed logopapersJun 30 2025
Based on preoperative clinical text data and lumbar magnetic resonance imaging (MRI), we applied machine learning (ML) algorithms to construct a model that would predict early recurrence in lumbar-disc herniation (LDH) patients who underwent percutaneous endoscopic lumbar discectomy (PELD). We then explored the clinical performance of this prognostic prediction model via multimodal-data fusion. Clinical text data and radiological images of LDH patients who underwent PELD at the Intervertebral Disc Center of the Affiliated Hospital of Gansu University of Traditional Chinese Medicine (AHGUTCM; Lanzhou, China) were retrospectively collected. Two radiologists with clinical-image reading experience independently outlined regions of interest (ROI) on the MRI images and extracted radiomic features using 3D Slicer software. We then randomly separated the samples into a training set and a test set at a 7:3 ratio, used eight ML algorithms to construct predictive radiomic-feature models, evaluated model performance by the area under the curve (AUC), and selected the optimal model for screening radiomic features and calculating radiomic scores (Rad-scores). Finally, after using logistic regression to construct a nomogram for predicting the early-recurrence rate, we evaluated the nomogram's clinical applicability using a clinical-decision curve. We initially extracted 851 radiomic features. After constructing our models, we determined based on AUC values that the optimal ML algorithm was least absolute shrinkage and selection operator (LASSO) regression, which had an AUC of 0.76 and an accuracy rate of 91%. After screening features using the LASSO model, we predicted Rad-score for each sample of recurrent LDH using nine radiomic features. Next, we fused three of these clinical features -age, diabetes, and heavy manual labor-to construct a nomogram with an AUC of 0.86 (95% confidence interval [CI], 0.79-0.94). Analysis of the clinical-decision and impact curves showed that the prognostic prediction model with multimodal-data fusion had good clinical validity and applicability. We developed and analyzed a prognostic prediction model for LDH with multimodal-data fusion. Our model demonstrated good performance in predicting early postoperative recurrence in LDH patients; therefore, it has good prospects for clinical application and can provide clinicians with objective, accurate information to help them decide on presurgical treatment plans. However, external-validation studies are still needed to further validate the model's comprehensive performance and improve its generalization and extrapolation.

Leveraging Representation Learning for Bi-parametric Prostate MRI to Disambiguate PI-RADS 3 and Improve Biopsy Decision Strategies.

Umapathy L, Johnson PM, Dutt T, Tong A, Chopra S, Sodickson DK, Chandarana H

pubmed logopapersJun 30 2025
Despite its high negative predictive value (NPV) for clinically significant prostate cancer (csPCa), MRI suffers from a substantial number of false positives, especially for intermediate-risk cases. In this work, we determine whether a deep learning model trained with PI-RADS-guided representation learning can disambiguate the PI-RADS 3 classification, detect csPCa from bi-parametric prostate MR images, and avoid unnecessary benign biopsies. This study included 28,263 MR examinations and radiology reports from 21,938 men imaged for known or suspected prostate cancer between 2015 and 2023 at our institution (21 imaging locations with 34 readers), with 6352 subsequent biopsies. We trained a deep learning model, a representation learner (RL), to learn how radiologists interpret conventionally acquired T2-weighted and diffusion-weighted MR images, using exams in which the radiologists are confident in their risk assessments (PI-RADS 1 and 2 for the absence of csPCa vs. PI-RADS 4 and 5 for the presence of csPCa, n=21,465). We then trained biopsy-decision models to detect csPCa (Gleason score ≥7) using these learned image representations, and compared them to the performance of radiologists, and of models trained on other clinical variables (age, prostate volume, PSA, and PSA density) for treatment-naïve test cohorts consisting of only PI-RADS 3 (n=253, csPCa=103) and all PI-RADS (n=531, csPCa=300) cases. On the 2 test cohorts (PI-RADS-3-only, all-PI-RADS), RL-based biopsy-decision models consistently yielded higher AUCs in detecting csPCa (AUC=0.73 [0.66, 0.79], 0.88 [0.85, 0.91]) compared with radiologists (equivocal, AUC=0.79 [0.75, 0.83]) and the clinical model (AUCs=0.69 [0.62, 0.75], 0.78 [0.74, 0.82]). In the PIRADS-3-only cohort, all of whom would be biopsied using our institution's standard of care, the RL decision model avoided 41% (62/150) of benign biopsies compared with the clinical model (26%, P<0.001), and improved biopsy yield by 10% compared with the PI-RADS ≥3 decision strategy (0.50 vs. 0.40). Furthermore, on the all-PI-RADS cohort, RL decision model avoided 27% of additional benign biopsies (138/231) compared to radiologists (33%, P<0.001) with comparable sensitivity (93% vs. 92%), higher NPV (0.87 vs. 0.77), and biopsy yield (0.75 vs. 0.64). The combination of clinical and RL decision models further avoided benign biopsies (46% in PI-RADS-3-only and 62% in all-PI-RADS) while improving NPV (0.82, 0.88) and biopsy yields (0.52, 0.76) across the 2 test cohorts. Our PI-RADS-guided deep learning RL model learns summary representations from bi-parametric prostate MR images that can provide additional information to disambiguate intermediate-risk PI-RADS 3 assessments. The resulting RL-based biopsy decision models also outperformed radiologists in avoiding benign biopsies while maintaining comparable sensitivity to csPCa for the all-PI-RADS cohort. Such AI models can easily be integrated into clinical practice to supplement radiologists' reads in general and improve biopsy yield for any equivocal decisions.

Cost-effectiveness analysis of artificial intelligence (AI) in earlier detection of liver lesions in cirrhotic patients at risk of hepatocellular carcinoma in Italy.

Maas L, Contreras-Meca C, Ghezzo S, Belmans F, Corsi A, Cant J, Vos W, Bobowicz M, Rygusik M, Laski DK, Annemans L, Hiligsmann M

pubmed logopapersJun 30 2025
Hepatocellular carcinoma (HCC) is the fifth most common cancer worldwide and the third most common cause of cancer-related death. Cirrhosis is a major contributing factor, accounting for over 90% of HCC cases. With the high mortality rate of HCC, earlier detection of HCC is critical. When added to magnetic resonance imaging (MRI), artificial intelligence (AI) has been shown to improve HCC detection. Nonetheless, to date no cost-effectiveness analyses have been conducted on an AI tool to enhance earlier HCC detection. This study reports on the cost-effectiveness of detection of liver lesions with AI improved MRI in the surveillance for HCC in patients with a cirrhotic liver compared to usual care (UC). The model structure included a decision tree followed by a state-transition Markov model from an Italian healthcare perspective. Lifetime costs and quality-adjusted life years (QALY) were simulated in cirrhotic patients at risk of HCC. One-way sensitivity analyses and two-way sensitivity analyses were performed. Results were presented as incremental cost-effectiveness ratios (ICER). For patients receiving UC, the average lifetime costs per 1,000 patients were €16,604,800 compared to €16,610,250 for patients receiving the AI approach. With a QALY gained of 0.55 and incremental costs of €5,000 for every 1,000 patients, the ICER was €9,888 per QALY gained, indicating cost-effectiveness with the willingness-to-pay threshold of €33,000/QALY gained. Main drivers of cost-effectiveness included the cost and performance (sensitivity and specificity) of the AI tool. This study suggests that an AI-based approach to earlier detect HCC in cirrhotic patients can be cost-effective. By incorporating cost-effective AI-based approaches in clinical practice, patient outcomes and healthcare efficiency are improved.

A Deep Learning-Based De-Artifact Diffusion Model for Removing Motion Artifacts in Knee MRI.

Li Y, Gong T, Zhou Q, Wang H, Yan X, Xi Y, Shi Z, Deng W, Shi F, Wang Y

pubmed logopapersJun 30 2025
Motion artifacts are common for knee MRI, which usually lead to rescanning. Effective removal of motion artifacts would be clinically useful. To construct an effective deep learning-based model to remove motion artifacts for knee MRI using real-world data. Retrospective. Model construction: 90 consecutive patients (1997 2D slices) who had knee MRI images with motion artifacts paired with immediately rescanned images without artifacts served as ground truth. Internal test dataset: 25 patients (795 slices) from another period; external test dataset: 39 patients (813 slices) from another hospital. 3-T/1.5-T knee MRI with T1-weighted imaging, T2-weighted imaging, and proton-weighted imaging. A deep learning-based supervised conditional diffusion model was constructed. Objective metrics (root mean square error [RMSE], peak signal-to-noise ratio [PSNR], structural similarity [SSIM]) and subjective ratings were used for image quality assessment, which were compared with three other algorithms (enhanced super-resolution [ESR], enhanced deep super-resolution, and ESR using a generative adversarial network). Diagnostic performance of the output images was compared with the rescanned images. The Kappa Test, Pearson chi-square test, Fredman's rank-sum test, and the marginal homogeneity test. A p value < 0.05 was considered statistically significant. Subjective ratings showed significant improvements in the output images compared to the input, with no significant difference from the ground truth. The constructed method demonstrated the smallest RMSE (11.44  <math xmlns="http://www.w3.org/1998/Math/MathML"> <semantics><mrow><mo>±</mo></mrow> <annotation>$$ \pm $$</annotation></semantics> </math>  5.47 in the validation cohort; 13.95  <math xmlns="http://www.w3.org/1998/Math/MathML"> <semantics><mrow><mo>±</mo></mrow> <annotation>$$ \pm $$</annotation></semantics> </math>  4.32 in the external test cohort), the largest PSNR (27.61  <math xmlns="http://www.w3.org/1998/Math/MathML"> <semantics><mrow><mo>±</mo></mrow> <annotation>$$ \pm $$</annotation></semantics> </math>  3.20 in the validation cohort; 25.64  <math xmlns="http://www.w3.org/1998/Math/MathML"> <semantics><mrow><mo>±</mo></mrow> <annotation>$$ \pm $$</annotation></semantics> </math>  2.67 in the external test cohort) and SSIM (0.97  <math xmlns="http://www.w3.org/1998/Math/MathML"> <semantics><mrow><mo>±</mo></mrow> <annotation>$$ \pm $$</annotation></semantics> </math>  0.04 in the validation cohort; 0.94  <math xmlns="http://www.w3.org/1998/Math/MathML"> <semantics><mrow><mo>±</mo></mrow> <annotation>$$ \pm $$</annotation></semantics> </math>  0.04 in the external test cohort) compared to the other three algorithms. The output images achieved comparable diagnostic capability as the ground truth for multiple anatomical structures. The constructed model exhibited feasibility and effectiveness, and outperformed multiple other algorithms for removing motion artifacts in knee MRI. Level 3. Stage 2.

Physics informed guided diffusion for accelerated multi-parametric MRI reconstruction

Perla Mayo, Carolin M. Pirkl, Alin Achim, Bjoern Menze, Mohammad Golbabaee

arxiv logopreprintJun 29 2025
We introduce MRF-DiPh, a novel physics informed denoising diffusion approach for multiparametric tissue mapping from highly accelerated, transient-state quantitative MRI acquisitions like Magnetic Resonance Fingerprinting (MRF). Our method is derived from a proximal splitting formulation, incorporating a pretrained denoising diffusion model as an effective image prior to regularize the MRF inverse problem. Further, during reconstruction it simultaneously enforces two key physical constraints: (1) k-space measurement consistency and (2) adherence to the Bloch response model. Numerical experiments on in-vivo brain scans data show that MRF-DiPh outperforms deep learning and compressed sensing MRF baselines, providing more accurate parameter maps while better preserving measurement fidelity and physical model consistency-critical for solving reliably inverse problems in medical imaging.

Perivascular Space Burden in Children With Autism Spectrum Disorder Correlates With Neurodevelopmental Severity.

Frigerio G, Rizzato G, Peruzzo D, Ciceri T, Mani E, Lanteri F, Mariani V, Molteni M, Agarwal N

pubmed logopapersJun 29 2025
Cerebral perivascular spaces (PVS) are involved in cerebrospinal fluid (CSF) circulation and clearance of metabolic waste in adult humans. A high number of PVS has been reported in autism spectrum disorder (ASD) but its relationship with CSF and disease severity is unclear. To quantify PVS in children with ASD through MRI. Retrospective. Sixty six children with ASD (mean age: 4.7 ± 1.5 years; males/females: 59/7). 3T, 3D T1-weighted GRE and 3D T2-weighted turbo spin echo sequences. PVS were segmented using a weakly supervised PVS algorithm. PVS count, white matter-perivascular spaces (WM-PVS<sub>tot</sub>) and normalized volume (WM-PVS<sub>voln</sub>) were analyzed in the entire white matter. Six regions: frontal, parietal, limbic, occipital, temporal, and deep WM (WM-PVS<sub>sr</sub>). WM, GM, CSF, and extra-axial CSF (eaCSF) volumes were also calculated. Autism Diagnostic Observation Schedule, Wechsler Intelligence Scale, and Griffiths Mental Developmental scales were used to assess clinical severity and developmental quotient (DQ). Kendall correlation analysis (continuous variables) and Friedman (categorical variables) tests were used to compare medians of PVS variables across different WM regions. Post hoc pairwise comparisons with Wilcoxon tests were used to evaluate distributions of PVS in WM regions. Generalized linear models were employed to assess DQ, clinical severity, age, and eaCSF volume in relation to PVS variables. A p-value < 0.05 indicated statistical significance. Severe DQ (β = 0.0089), mild form of autism (β = -0.0174), and larger eaCSF (β = 0.0082) volume was significantly associated with greater WM-PVS<sub>tot</sub> count. WM-PVS<sub>voln</sub> was predominantly affected by normalized eaCSF volume (eaCSF<sub>voln</sub>) (β = 0.0242; adjusted for WM volumes). The percentage of WM-PVS<sub>sr</sub> was higher in the frontal areas (32%) and was lowest in the temporal regions (11%). PVS count and volume in ASD are associated with eaCSF<sub>voln</sub>. PVS count is related to clinical severity and DQ. PVS count was higher in frontal regions and lower in temporal regions. 4. Stage 3.

CA-Diff: Collaborative Anatomy Diffusion for Brain Tissue Segmentation

Qilong Xing, Zikai Song, Yuteng Ye, Yuke Chen, Youjia Zhang, Na Feng, Junqing Yu, Wei Yang

arxiv logopreprintJun 28 2025
Segmentation of brain structures from MRI is crucial for evaluating brain morphology, yet existing CNN and transformer-based methods struggle to delineate complex structures accurately. While current diffusion models have shown promise in image segmentation, they are inadequate when applied directly to brain MRI due to neglecting anatomical information. To address this, we propose Collaborative Anatomy Diffusion (CA-Diff), a framework integrating spatial anatomical features to enhance segmentation accuracy of the diffusion model. Specifically, we introduce distance field as an auxiliary anatomical condition to provide global spatial context, alongside a collaborative diffusion process to model its joint distribution with anatomical structures, enabling effective utilization of anatomical features for segmentation. Furthermore, we introduce a consistency loss to refine relationships between the distance field and anatomical structures and design a time adapted channel attention module to enhance the U-Net feature fusion procedure. Extensive experiments show that CA-Diff outperforms state-of-the-art (SOTA) methods.
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