The diffusion MRI Neurite Exchange Imaging model offers a promising framework for probing gray matter microstructure by estimating parameters such as compartment sizes, diffusivities, and inter-compartmental water exchange time. However, existing protocols require long scan times. This study proposes a reduced acquisition scheme for the Connectome 2.0 scanner that preserves model accuracy while substantially shortening scan duration. We developed a data-driven framework using explainable artificial intelligence with a guided recursive feature elimination strategy to identify an optimal 8-feature subset from a 15-feature protocol. The performance of this optimized protocol was validated in vivo and benchmarked against the full acquisition and alternative reduction strategies. Parameter accuracy, preservation of anatomical contrast, and test-retest reproducibility were assessed. The reduced protocol yielded parameter estimates and cortical maps comparable to the full protocol, with low estimation errors in synthetic data and minimal impact on test-retest variability. Compared to theory-driven and heuristic reduction schemes, the optimized protocol demonstrated superior robustness, reducing the deviation in water exchange time estimates by over two-fold. In conclusion, this hybrid optimization framework enables viable imaging of neurite exchange in 14 minutes without loss of parameter fidelity. This approach supports the broader application of exchange-sensitive diffusion magnetic resonance imaging in neuroscience and clinical research, and offers a generalizable method for designing efficient acquisition protocols in biophysical parameter mapping.

Objective. Proton beams enable localized dose delivery. Accurate range estimation is essential, but planning still relies on X-ray CT, which introduces uncertainty in stopping power and range. Proton CT measures water equivalent thickness directly but suffers resolution loss from multiple Coulomb scattering. We develop a data driven method that reconstructs water equivalent path length (WEPL) maps from energy resolved proton radiographs, bypassing intermediate reconstructions. Approach. We present a machine learning pipeline for WEPL from high dimensional radiographs. Data were generated with the TOPAS Monte Carlo toolkit, modeling a clinical nozzle and a patient CT. Proton energies spanned 70-230 MeV across 72 projection angles. Principal component analysis reduced input dimensionality while preserving signal. A conditional GAN with gradient penalty was trained for WEPL prediction using a composite loss (adversarial, MSE, SSIM, perceptual) to balance sharpness, accuracy, and stability. Main results. The model reached a mean relative WEPL deviation of 2.5 percent, an SSIM of 0.97, and a proton radiography gamma index passing rate of 97.1 percent (2 percent delta WEPL, 3 mm distance-to-agreement) on a simulated head phantom. Results indicate high spatial fidelity and strong structural agreement. Significance. WEPL can be mapped directly from proton radiographs with deep learning while avoiding intermediate steps. The method mitigates limits of analytic techniques and may improve treatment planning. Future work will tune the number of PCA components, include detector response, explore low dose settings, and extend multi angle data toward full proton CT reconstruction; it is compatible with clinical workflows.

In lung CT imaging, motion artifacts caused by cardiac motion and respiration are common. Recently, CLEAR Motion, a deep learning-based reconstruction method that applies motion correction technology, has been developed. This study aims to quantitatively evaluate the clinical usefulness of CLEAR Motion. A total of 129 lung CT was analyzed, and heart rate, height, weight, and BMI of all patients were obtained from medical records. Images with and without CLEAR Motion were reconstructed, and quantitative evaluation was performed using variance of Laplacian (VL) and PSNR. The difference in VL (DVL) between the two reconstruction methods was used to evaluate which part of the lung field (upper, middle, or lower) CLEAR Motion is effective. To evaluate the effect of motion correction based on patient characteristics, the correlation between body mass index (BMI), heart rate and DVL was determined. Visual assessment of motion artifacts was performed using paired comparisons by 9 radiological technologists. With the exception of one case, VL was higher in CLEAR Motion. Almost all the cases (110 cases) showed large DVL in the lower part. BMI showed a positive correlation with DVL (r = 0.55, p < 0.05), while no differences in DVL were observed based on heart rate. The average PSNR was 35.8 ± 0.92 dB. Visual assessments indicated that CLEAR Motion was preferred in most cases, with an average preference score of 0.96 (p < 0.05). Using Clear Motion allows for obtaining images with fewer motion artifacts in lung CT.

Multispectral computed tomography (CT) enables advanced material characterization by acquiring energy-resolved projection data. However, since the incoming X-ray flux is be distributed across multiple narrow energy bins, the photon count per bin is greatly reduced compared to standard energy-integrated imaging. This inevitably introduces substantial noise, which can either prolong acquisition times and make scan durations infeasible or degrade image quality with strong noise artifacts. To address this challenge, we present a dedicated neural network-based denoising approach tailored for multispectral CT projections acquired at the BM18 beamline of the ESRF. The method exploits redundancies across angular, spatial, and spectral domains through specialized sub-networks combined via stacked generalization and an attention mechanism. Non-local similarities in the angular-spatial domain are leveraged alongside correlations between adjacent energy bands in the spectral domain, enabling robust noise suppression while preserving fine structural details. Training was performed exclusively on simulated data replicating the physical and noise characteristics of the BM18 setup, with validation conducted on CT scans of custom-designed phantoms containing both high-Z and low-Z materials. The denoised projections and reconstructions demonstrate substantial improvements in image quality compared to classical denoising methods and baseline CNN models. Quantitative evaluations confirm that the proposed method achieves superior performance across a broad spectral range, generalizing effectively to real-world experimental data while significantly reducing noise without compromising structural fidelity.

To develop a deep learning-based reconstruction method for highly accelerated 3D time-of-flight MRA (TOF-MRA) that achieves high-quality reconstruction with robust generalization using extremely limited acquired raw data, addressing the challenge of time-consuming acquisition of high-resolution, whole-head angiograms. A novel few-shot learning-based reconstruction framework is proposed, featuring a 3D variational network specifically designed for 3D TOF-MRA that is pre-trained on simulated complex-valued, multi-coil raw k-space datasets synthesized from diverse open-source magnitude images and fine-tuned using only two single-slab experimentally acquired datasets. The proposed approach was evaluated against existing methods on acquired retrospectively undersampled in vivo k-space data from five healthy volunteers and on prospectively undersampled data from two additional subjects. The proposed method achieved superior reconstruction performance on experimentally acquired in vivo data over comparison methods, preserving most fine vessels with minimal artifacts with up to eight-fold acceleration. Compared to other simulation techniques, the proposed method generated more realistic raw k-space data for 3D TOF-MRA. Consistently high-quality reconstructions were also observed on prospectively undersampled data. By leveraging few-shot learning, the proposed method enabled highly accelerated 3D TOF-MRA relying on minimal experimentally acquired data, achieving promising results on both retrospective and prospective in vivo data while outperforming existing methods. Given the challenges of acquiring and sharing large raw k-space datasets, this holds significant promise for advancing research and clinical applications in high-resolution, whole-head 3D TOF-MRA imaging.

&#xD;Deep learning has shown great promise for improving medical image reconstruction, including PET. However, concerns remain about the stability and robustness of these methods, especially when trained on limited data. This work aims to explore the use of the Plug-and-Play (PnP) framework in PET reconstruction to address these concerns.&#xD;&#xD;Approach:&#xD;We propose a convergent PnP algorithm for low-count PET reconstruction based on the Douglas-Rachford splitting method. We consider several denoisers trained to satisfy fixed-point conditions, with convergence properties ensured either during training or by design, including a spectrally normalized network and a deep equilibrium model. We evaluate the bias-standard deviation tradeoff across clinically relevant regions and an unseen pathological case in a synthetic experiment and a real study. Comparisons are made with model-based iterative reconstruction, post-reconstruction denoising, a deep end-to-end unfolded network and PnP with a Gaussian denoiser.&#xD;&#xD;Main Results:&#xD;Our method achieves lower bias than post-reconstruction processing and reduced standard deviation at matched bias compared to model-based iterative reconstruction. While spectral normalization underperforms in generalization, the deep equilibrium model remains competitive with convolutional networks for plug-and-play reconstruction and generalizes better to the unseen pathology. Compared to the end-to-end unfolded network, it also generalizes more consistently.&#xD;&#xD;Significance:&#xD;This study demonstrates the potential of the PnP framework to improve image quality and quantification accuracy in PET reconstruction. It also highlights the importance of how convergence conditions are imposed on the denoising network to ensure robust and generalizable performance.

Diffusion magnetic resonance imaging (dMRI) often suffers from low spatial and angular resolution due to inherent limitations in imaging hardware and system noise, adversely affecting the accurate estimation of microstructural parameters with fine anatomical details. Deep learning-based super-resolution techniques have shown promise in enhancing dMRI resolution without increasing acquisition time. However, most existing methods are confined to either spatial or angular super-resolution, disrupting the information exchange between the two domains and limiting their effectiveness in capturing detailed microstructural features. Furthermore, traditional pixel-wise loss functions only consider pixel differences, and struggle to recover intricate image details essential for high-resolution reconstruction. We propose SHRL-dMRI, a novel Spherical Harmonics Representation Learning framework for high-fidelity, generalizable super-resolution in dMRI to address these challenges. SHRL-dMRI explores implicit neural representations and spherical harmonics to model continuous spatial and angular representations, simultaneously enhancing both spatial and angular resolution while improving the accuracy of microstructural parameter estimation. To further preserve image fidelity, a data-fidelity module and wavelet-based frequency loss are introduced, ensuring the super-resolved images preserve image consistency and retain fine details. Extensive experiments demonstrate that, compared to five other state-of-the-art methods, our method significantly enhances dMRI data resolution, improves the accuracy of microstructural parameter estimation, and provides better generalization capabilities. It maintains stable performance even under a 45× downsampling factor. The proposed method can effectively improve the resolution of dMRI data without increasing the acquisition time, providing new possibilities for future clinical applications.

Stroke, frequently associated with carotid artery disease, is evaluated using carotid computed tomography angiography (CTA). Dual-energy CTA (DE-CTA) enhances imaging quality but presents challenges in maintaining high image clarity with low-dose scans. To compare the image quality of 50 keV virtual monoenergetic images (VMI) generated using Deep Learning Image Reconstruction (DLIR) and Adaptive Statistical Iterative Reconstruction-V (ASIR-V) algorithms under a triple-low scanning protocol in carotid CTA. A prospective study was conducted with 120 patients undergoing DE-CTA. The control group (Group 1), with a noise index (NI) of 4.0 and a contrast agent dose of 0.5 mL/kg, used the ASIR-V algorithm. The experimental group was divided into four subgroups: Group 2 (ASIR-V 50%), Group 3 (DLIR-L), Group 4 (DLIR-M), and Group 5 (DLIR-H), with a higher NI of 13.0 and a reduced contrast agent dose of 0.4 mL/kg. Objective image quality was assessed through signal-to-noise ratio (SNR), contrast-to-noise ratio (CNR), and standard deviation (SD), while subjective quality was evaluated using a 5-point Likert scale. Radiation dose and contrast agent volume were also measured. The triple-low scanning protocol reduced radiation exposure by 53.2%, contrast agent volume by 19.7%, and injection rate by 19.8%. The DLIR-H setting outperformed ASIR-V, demonstrating superior image quality, better noise suppression, and improved contrast in small vessels. VMI at 50 keV showed enhanced diagnostic clarity with minimal radiation and contrast agent usage. The DLIR algorithm, particularly at high settings, significantly enhances image quality in DE-CTA VMI under a triple-low scanning protocol, offering a better balance between radiation dose reduction and image clarity.

Acquiring images in high resolution is often a challenging task. Especially in the medical sector, image quality has to be balanced with acquisition time and patient comfort. To strike a compromise between scan time and quality for Magnetic Resonance (MR) imaging, two anisotropic scans with different low-resolution (LR) orientations can be acquired. Typically, LR scans are analyzed individually by radiologists, which is time consuming and can lead to inaccurate interpretation. To tackle this, we propose a novel approach for fusing two orthogonal anisotropic LR MR images to reconstruct anatomical details in a unified representation. Our multi-view neural network is trained in a self-supervised manner, without requiring corresponding high-resolution (HR) data. To optimize the model, we introduce a sparse coordinate-based loss, enabling the integration of LR images with arbitrary scaling. We evaluate our method on MR images from two independent cohorts. Our results demonstrate comparable or even improved super-resolution (SR) performance compared to state-of-the-art (SOTA) self-supervised SR methods for different upsampling scales. By combining a patient-agnostic offline and a patient-specific online phase, we achieve a substantial speed-up of up to ten times for patient-specific reconstruction while achieving similar or better SR quality. Code is available at https://github.com/MajaSchle/tripleSR.

This retrospective-prospective study evaluated whether a deep learning-based MRI reconstruction algorithm can preserve diagnostic quality in brain MRI scans accelerated up to fourfold, using both public and prospective clinical data. The study included 18 healthy volunteers (scans acquired at 3T, January 2024-March 2025), as well as selected fastMRI public datasets with diverse pathologies. Phase-encoding-undersampled 2D/3D T1, T2, and FLAIR sequences were reconstructed with DeepFoqus-Accelerate and compared with standard-of-care (SOC). Three board-certified neuroradiologists and two MRI technologists independently reviewed 36 paired SOC/AI reconstructions from both datasets using a 5-point Likert scale, while quantitative similarity was assessed for 408 scans and 1224 datasets using Structural Similarity Index (SSIM), Peak Signal-to-Noise Ratio (PSNR), and Haar wavelet-based Perceptual Similarity Index (HaarPSI). No AI-reconstructed scan scored below 3 (minimally acceptable), and 95% scored $\geq 4$. Mean SSIM was 0.95 $\pm$ 0.03 (90% cases >0.90), PSNR >41.0 dB, and HaarPSI >0.94. Inter-rater agreement was slight to moderate. Rare artifacts did not affect diagnostic interpretation. These findings demonstrate that DeepFoqus-Accelerate enables robust fourfold brain MRI acceleration with 75% reduced scan time, while preserving diagnostic image quality and supporting improved workflow efficiency.